UHGV-0056546 (vOTU-045005)

Viral Genome: UHGV-0056546

Genome Information

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Overview
UHGV ID	UHGV-0056546
vOTU ID	vOTU-045005
Representative Genome?	Yes
Source	GPD
Original Genome ID	uvig_48452
Associated Biosample	N/A
Viral Genome Confidence	Confident

Quality Assessment
CheckV Method	DTR
CheckV Completeness	100 (Complete)
Trimmed?	Yes
CheckV Viral Markers	16
CheckV Host Markers	3
Recoded?	No

Viral Content
geNomad score	0.9795
Viral Hallmark Genes (geNomad)	12
Plasmid Hallmark Genes (geNomad)	0
ViralVerify Prediction	Virus
ViralVerify Score	27.44
Jumbo Phage?	No

Genome Content
Length (bps)	31,049
GC Content	41.75%
Genetic Code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS Genes	47
CDS Density	94%
Average CDS Length (bps)	618.77
Total tRNA Genes	0
Suppressor tRNA Genes	0

Genome Content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
structural_annotation	UHGV-0056546_1	COG1321	N/A	N/A	N/A	N/A
PHROG	UHGV-0056546_3	phrog_14088	56.5	2.7e-16	N/A	unknown function
UniRef90	UHGV-0056546_3	UniRef90_M9LIB6	62.0	0.0000000000356	Membrane carboxypeptidase	N/A
eggNOG-mapper	UHGV-0056546_3	1256908.HMPREF0373_00648	51.6	0.0000000722	N/A	N/A
PHROG	UHGV-0056546_4	phrog_1305	136.7	1.3e-40	DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0056546_4	UniRef90_UPI00156E7345	469.0	0	N/A	N/A
eggNOG-mapper	UHGV-0056546_4	445974.CLORAM_02962	179.0	0	N/A	N/A
structural_annotation	UHGV-0056546_4	PF06573	N/A	N/A	N/A	N/A
PHROG	UHGV-0056546_7	phrog_3777	81.0	9.4e-24	N/A	unknown function
UniRef90	UHGV-0056546_7	UniRef90_A0A3E4GMR6	230.0	0	N/A	N/A
eggNOG-mapper	UHGV-0056546_7	411460.RUMTOR_02064	116.0	4.86e-32	N/A	N/A
Pfam	UHGV-0056546_7	PF12957	N/A	N/A	N/A	DUF3846
structural_annotation	UHGV-0056546_7	PF12957	N/A	N/A	N/A	N/A
PHROG	UHGV-0056546_8	phrog_3584	145.9	2.39622e-43	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0056546_8	33035.JPJF01000138_gene3005	345.0	0	N/A	N/A
structural_annotation	UHGV-0056546_8	PF01446	N/A	N/A	N/A	N/A
KOfam	UHGV-0056546_9	K03469	56.2	7.6e-16	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	N/A
PHROG	UHGV-0056546_9	phrog_531	59.6	5.5e-17	Rnase H	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0056546_9	UniRef90_A0A174HML3	206.0	0	Ribonuclease H	N/A
eggNOG-mapper	UHGV-0056546_9	1235792.C808_03083	76.6	2.11e-16	RNase H	N/A
Pfam	UHGV-0056546_9	PF00075	N/A	N/A	RNase H	RNase_H
COG	UHGV-0056546_9	COG0328	N/A	N/A	Ribonuclease HI	N/A
KOfam	UHGV-0056546_10	K03497	143.5	2.49992e-42	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	N/A
PHROG	UHGV-0056546_10	phrog_6218	203.7	0	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0056546_10	UniRef90_A0A174HNH0	813.0	0	Probable chromosome-partitioning protein parB	N/A
eggNOG-mapper	UHGV-0056546_10	411461.DORFOR_01144	317.0	0	Belongs to the ParB family	N/A
Pfam	UHGV-0056546_10	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
NCBIFam	UHGV-0056546_10	TIGR00180.1	N/A	N/A	ParB/RepB/Spo0J family partition protein	N/A
COG	UHGV-0056546_10	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-0056546_10	PF02195,PF18579,MF_02015,TIGR00180,COG1475	N/A	N/A	N/A	N/A
PHROG	UHGV-0056546_12	phrog_7566	102.5	1.9e-30	N/A	unknown function
eggNOG-mapper	UHGV-0056546_12	97139.C824_05985	112.0	1.11e-30	N/A	N/A
UniRef90	UHGV-0056546_13	UniRef90_UPI000E4AEE34	218.0	0	N/A	N/A
eggNOG-mapper	UHGV-0056546_13	411460.RUMTOR_01556	208.0	0	N/A	N/A
Pfam	UHGV-0056546_13	PF14199	N/A	N/A	N/A	DUF4317
structural_annotation	UHGV-0056546_13	PF14199,MF_00730,NF001557,COG3081	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0056546_14	PF17516,NF037951	N/A	N/A	N/A	N/A
UniRef90	UHGV-0056546_18	UniRef90_A0A1C5X6R0	207.0	0	YopX protein	N/A
eggNOG-mapper	UHGV-0056546_18	457412.RSAG_01162	118.0	6.99e-32	YopX protein	N/A
PHROG	UHGV-0056546_19	phrog_15198	63.2	4.7e-18	N/A	unknown function
UniRef90	UHGV-0056546_19	UniRef90_A0A174HIL1	151.0	0	N/A	N/A
eggNOG-mapper	UHGV-0056546_19	658655.HMPREF0988_00863	48.5	0.00000959	N/A	N/A
Pfam	UHGV-0056546_19	PF04448	N/A	N/A	N/A	DUF551
PHROG	UHGV-0056546_20	phrog_6568	63.3	2.6e-18	N/A	unknown function
eggNOG-mapper	UHGV-0056546_20	1203606.HMPREF1526_00241	50.8	0.000000392	N/A	N/A
PHROG	UHGV-0056546_21	phrog_36	74.2	2e-21	transcriptional regulator	transcription regulation
UniRef90	UHGV-0056546_21	UniRef90_UPI001F14539B	119.0	1.33e-31	N/A	N/A
eggNOG-mapper	UHGV-0056546_21	1235800.C819_02243	106.0	1.82e-27	N/A	N/A
structural_annotation	UHGV-0056546_21	PF07374,MF_00674,NF007227,COG1342	N/A	N/A	N/A	N/A
KOfam	UHGV-0056546_22	K07451	51.0	0.000000000000029	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	N/A
PHROG	UHGV-0056546_22	phrog_119	80.7	1.8e-23	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0056546_22	UniRef90_UPI00156F1D4A	223.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0056546_22	1232452.BAIB02000007_gene1631	98.6	3.02e-24	HNH nucleases	N/A
Pfam	UHGV-0056546_22	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0056546_22	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-0056546_23	phrog_5110	95.8	2.6e-28	terminase small subunit	head and packaging
UniRef90	UHGV-0056546_23	UniRef90_A0A1C5LZF0	102.0	9.27e-26	Phage terminase, small subunit	N/A
eggNOG-mapper	UHGV-0056546_23	349161.Dred_2608	79.7	4.7e-18	N/A	N/A
Pfam	UHGV-0056546_23	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
structural_annotation	UHGV-0056546_23	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-0056546_24	phrog_9	261.9	0	terminase large subunit	head and packaging
UniRef90	UHGV-0056546_24	UniRef90_D4M588	1059.0	0	Phage terminase-like protein, large subunit	N/A
eggNOG-mapper	UHGV-0056546_24	1232452.BAIB02000007_gene1629	531.0	0	Phage terminase-like protein large subunit	N/A
Pfam	UHGV-0056546_24	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0056546_24	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0056546_24	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0056546_24	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0056546_25	phrog_12	71.7	6.9e-21	portal protein	head and packaging
UniRef90	UHGV-0056546_25	UniRef90_UPI00156D5DC9	609.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0056546_25	1232452.BAIB02000007_gene1627	284.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-0056546_25	PF04860	N/A	N/A	Phage portal protein	Phage_portal
COG	UHGV-0056546_25	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0056546_25	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-0056546_26	K01358	159.2	0	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0056546_26	phrog_94	237.4	0	head maturation protease	head and packaging
UniRef90	UHGV-0056546_26	UniRef90_UPI00156EEE56	481.0	0	Clp protease ClpP	N/A
eggNOG-mapper	UHGV-0056546_26	1232452.BAIB02000007_gene1626	268.0	0	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-0056546_26	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0056546_26	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0056546_26	PF00574,MF_00444,TIGR00493,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0056546_27	phrog_10	79.7	1.8e-23	major head protein	head and packaging
UniRef90	UHGV-0056546_27	UniRef90_UPI00156F222D	726.0	0	phage major capsid protein	N/A
eggNOG-mapper	UHGV-0056546_27	1232452.BAIB02000007_gene1625	466.0	0	Phage capsid family	N/A
Pfam	UHGV-0056546_27	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0056546_27	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0056546_27	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0056546_27	PF05065,TIGR01554,COG4653	N/A	N/A	N/A	N/A
UniRef90	UHGV-0056546_29	UniRef90_UPI00189B1559	234.0	0	phage head closure protein	N/A
structural_annotation	UHGV-0056546_29	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0056546_30	PF05657	N/A	N/A	N/A	N/A
PHROG	UHGV-0056546_31	phrog_5	47.0	0.00000000000061	tail completion or Neck1 protein	connector
UniRef90	UHGV-0056546_31	UniRef90_D4M595	234.0	0	Phage protein, HK97 gp10 family	N/A
NCBIFam	UHGV-0056546_31	TIGR01725.1	N/A	N/A	HK97-gp10 family putative phage morphogenesis protein	N/A
structural_annotation	UHGV-0056546_31	TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-0056546_32	phrog_88	95.1	7.9e-28	major tail protein	tail
UniRef90	UHGV-0056546_32	UniRef90_D4M596	387.0	0	Phage major tail protein, phi13 family	N/A
Pfam	UHGV-0056546_32	PF04630	N/A	N/A	Phage tail tube protein	Phage_TTP_1
NCBIFam	UHGV-0056546_32	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-0056546_32	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
KOfam	UHGV-0056546_34	K10421	41.3	0.0000000000083	CLIP1, RSN; CAP-Gly domain-containing linker protein 1	N/A
PHROG	UHGV-0056546_34	phrog_23464	193.4	0	N/A	unknown function
UniRef90	UHGV-0056546_34	UniRef90_A0A350VIV1	267.0	0	Phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-0056546_34	1232452.BAIB02000007_gene1616	395.0	0	phage tail tape measure protein	N/A
COG	UHGV-0056546_34	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
PHROG	UHGV-0056546_35	phrog_33	66.4	7.1e-19	distal tail protein Dit	tail
UniRef90	UHGV-0056546_35	UniRef90_UPI001570C170	472.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-0056546_35	1235798.C817_02569	211.0	0	tail component	N/A
NCBIFam	UHGV-0056546_35	TIGR01633.1	N/A	N/A	distal tail protein Dit	N/A
COG	UHGV-0056546_35	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0056546_35	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0056546_36	phrog_13289	426.7	0	tail protein	tail
UniRef90	UHGV-0056546_36	UniRef90_UPI001570BE36	1259.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-0056546_36	1235798.C817_02568	473.0	0	Prophage endopeptidase tail	N/A
Pfam	UHGV-0056546_36	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0056546_36	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0056546_36	COG2885	N/A	N/A	Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins	N/A
structural_annotation	UHGV-0056546_36	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0056546_37	phrog_14030	157.5	0	N/A	unknown function
UniRef90	UHGV-0056546_37	UniRef90_UPI0018999D57	663.0	0	phage tail tip lysozyme	N/A
eggNOG-mapper	UHGV-0056546_37	33035.JPJF01000093_gene2240	349.0	0	NlpC/P60 family	N/A
Pfam	UHGV-0056546_37	PF18013	N/A	N/A	Phage tail lysozyme	Phage_lysozyme2
Pfam	UHGV-0056546_37	PF00877	N/A	N/A	NlpC/P60 family	NLPC_P60
COG	UHGV-0056546_37	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
structural_annotation	UHGV-0056546_37	PF18013,PF05382,NF033742,COG0791	N/A	N/A	N/A	N/A
COG	UHGV-0056546_38	COG4675	N/A	N/A	Phage tail collar domain	N/A
UniRef90	UHGV-0056546_39	UniRef90_UPI00156FC490	109.0	7.31e-23	SGNH/GDSL hydrolase family protein	N/A
eggNOG-mapper	UHGV-0056546_39	411462.DORLON_00771	117.0	5.04e-26	N/A	N/A
structural_annotation	UHGV-0056546_39	PF10651,COG3470	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0056546_40	PF00041	N/A	N/A	N/A	N/A
PHROG	UHGV-0056546_42	phrog_17147	258.5	0	N/A	unknown function
UniRef90	UHGV-0056546_42	UniRef90_A0A374JQW7	565.0	0	N/A	N/A
eggNOG-mapper	UHGV-0056546_42	657322.FPR_27150	152.0	1.02e-36	N/A	N/A
KOfam	UHGV-0056546_43	K00986	89.5	4.4e-26	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	N/A
PHROG	UHGV-0056546_43	phrog_1423	150.9	9.80909e-45	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0056546_43	UniRef90_UPI00156F87C5	718.0	0	RNA-directed DNA polymerase	N/A
eggNOG-mapper	UHGV-0056546_43	33035.JPJF01000043_gene1000	258.0	0	Reverse transcriptase (RNA-dependent DNA polymerase)	N/A
PADLOC	UHGV-0056546_43	icity0040	57.7	8.4e-18	RT (reverse transcriptase)	CRISPR-CAS
Pfam	UHGV-0056546_43	PF00078	N/A	N/A	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
COG	UHGV-0056546_43	COG3344	N/A	N/A	Retron-type reverse transcriptase	N/A
structural_annotation	UHGV-0056546_43	PF00078,MF_04065,TIGR04416,COG3344	N/A	N/A	N/A	N/A
PHROG	UHGV-0056546_45	phrog_28526	115.1	2.1e-34	N/A	unknown function
UniRef90	UHGV-0056546_45	UniRef90_UPI00156FE2AD	95.1	6.69e-25	N/A	N/A
eggNOG-mapper	UHGV-0056546_45	411462.DORLON_00769	83.2	6.22e-21	N/A	N/A
Pfam	UHGV-0056546_45	PF04255	N/A	N/A	N/A	DUF433
PHROG	UHGV-0056546_46	phrog_4105	85.8	4.1e-25	N/A	unknown function
eggNOG-mapper	UHGV-0056546_46	411459.RUMOBE_00911	147.0	2.8026e-45	N/A	N/A
PHROG	UHGV-0056546_47	phrog_1129	87.7	7e-26	holin	lysis
UniRef90	UHGV-0056546_47	UniRef90_A0A893W7Y5	165.0	0	Phage holin family protein	N/A
eggNOG-mapper	UHGV-0056546_47	411460.RUMTOR_01325	131.0	9.15e-39	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-0056546_47	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0056546_47	PF16079	N/A	N/A	N/A	N/A