UHGV-0058273 (vOTU-034252)

Viral Genome: UHGV-0058273

Genome Information

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Overview
UHGV ID	UHGV-0058273
vOTU ID	vOTU-034252
Representative Genome?	Yes
Source	GPD
Original Genome ID	uvig_57694
Associated Biosample	N/A
Viral Genome Confidence	Confident

Quality Assessment
CheckV Method	AAI-based
CheckV Completeness	71.65 (Medium-quality)
Trimmed?	No
CheckV Viral Markers	8
CheckV Host Markers	0
Recoded?	No

Viral Content
geNomad score	0.973
Viral Hallmark Genes (geNomad)	5
Plasmid Hallmark Genes (geNomad)	0
ViralVerify Prediction	Virus
ViralVerify Score	15.72
Jumbo Phage?	No

Genome Content
Length (bps)	27,516
GC Content	39.51%
Genetic Code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS Genes	29
CDS Density	90%
Average CDS Length (bps)	852.93
Total tRNA Genes	1
Suppressor tRNA Genes	0

Genome Content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 71.65)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
structural_annotation	UHGV-0058273_1	PF13451	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0058273_3	PF18300,MF_01549,NF007981	N/A	N/A	N/A	N/A
UniRef90	UHGV-0058273_4	UniRef90_A0A3D4T790	70.5	0.000000000000068	YopX domain-containing protein	N/A
UniRef90	UHGV-0058273_9	UniRef90_UPI000C1B9F0E	52.8	0.00000853	N/A	N/A
COG	UHGV-0058273_9	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
PHROG	UHGV-0058273_10	phrog_7339	120.7	1.1e-35	DNA repair exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0058273_10	UniRef90_A0A7X9EDH9	314.0	0	Metallophos domain-containing protein	N/A
eggNOG-mapper	UHGV-0058273_10	1150474.JQJI01000006_gene784	103.0	1.14e-23	metallophosphoesterase	N/A
Pfam	UHGV-0058273_10	PF00149	N/A	N/A	Calcineurin-like phosphoesterase	Metallophos
COG	UHGV-0058273_10	COG1408	N/A	N/A	Predicted phosphohydrolase, MPP superfamily	N/A
structural_annotation	UHGV-0058273_10	PF12850,MF_00325,NF003118,COG1311	N/A	N/A	N/A	N/A
PHROG	UHGV-0058273_11	phrog_355	49.7	0.00000000000006	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0058273_11	UniRef90_A0A7X9GQF9	123.0	7.33e-34	N/A	N/A
eggNOG-mapper	UHGV-0058273_11	556263.FSEG_01048	60.1	0.000000000859	N/A	N/A
Pfam	UHGV-0058273_11	PF14359	N/A	N/A	N/A	DUF4406
structural_annotation	UHGV-0058273_11	PF14359,MF_03036,NF038232,COG3613	N/A	N/A	N/A	N/A
PHROG	UHGV-0058273_12	phrog_309	148.8	1.26117e-44	terminase small subunit	head and packaging
UniRef90	UHGV-0058273_12	UniRef90_A0A8J6P944	181.0	0	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0058273_12	1121091.AUMP01000003_gene2580	164.0	0	transposase activity	N/A
COG	UHGV-0058273_12	COG2963	N/A	N/A	Transposase InsE and inactivated derivatives	N/A
structural_annotation	UHGV-0058273_12	PF07141	N/A	N/A	N/A	N/A
KOfam	UHGV-0058273_13	K06909	112.9	3.7e-33	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0058273_13	phrog_979	151.3	1.4013e-45	terminase large subunit	head and packaging
UniRef90	UHGV-0058273_13	UniRef90_UPI0004130EC4	562.0	0	phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0058273_13	1121091.AUMP01000003_gene2581	562.0	0	Terminase-like family	N/A
Pfam	UHGV-0058273_13	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0058273_13	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0058273_13	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0058273_14	phrog_156	292.4	0	portal protein	head and packaging
UniRef90	UHGV-0058273_14	UniRef90_A0A2K9P4K6	407.0	0	Sigma-70 region 2	N/A
eggNOG-mapper	UHGV-0058273_14	1507.HMPREF0262_03465	432.0	0	N/A	N/A
structural_annotation	UHGV-0058273_14	PF16510,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0058273_15	K07584	67.0	3.3e-19	N/A	N/A
PHROG	UHGV-0058273_15	phrog_4478	75.9	3.9e-22	peptidase	other
UniRef90	UHGV-0058273_15	UniRef90_UPI001E4C016E	51.2	0.00000329	ribosomal-processing cysteine protease Prp	N/A
Pfam	UHGV-0058273_15	PF04327	N/A	N/A	Cysteine protease Prp	Peptidase_Prp
COG	UHGV-0058273_15	COG2868	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0058273_15	PF04327,NF011124,COG2868	N/A	N/A	N/A	N/A
PHROG	UHGV-0058273_16	phrog_13908	133.8	1.2e-39	N/A	unknown function
PHROG	UHGV-0058273_17	phrog_1357	268.5	0	major head protein	head and packaging
UniRef90	UHGV-0058273_17	UniRef90_UPI000B8B3F29	379.0	0	N4-gp56 family major capsid protein	N/A
eggNOG-mapper	UHGV-0058273_17	1507.HMPREF0262_03463	348.0	0	N/A	N/A
Pfam	UHGV-0058273_17	PF13252	N/A	N/A	N/A	DUF4043
NCBIFam	UHGV-0058273_17	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-0058273_17	PF13252,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0058273_18	phrog_15239	77.2	1.4e-22	N/A	unknown function
eggNOG-mapper	UHGV-0058273_18	1449126.JQKL01000003_gene1694	49.3	0.00000259	N/A	N/A
PHROG	UHGV-0058273_20	phrog_511	60.4	2e-17	internal virion protein	head and packaging
eggNOG-mapper	UHGV-0058273_20	1226322.HMPREF1545_00785	86.7	0.00000000000000316	N/A	N/A
structural_annotation	UHGV-0058273_20	PF11134,NF038128,COG5276	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0058273_23	1408437.JNJN01000060_gene452	508.0	0	heme binding	N/A
Pfam	UHGV-0058273_23	PF18838	N/A	N/A	Large polyvalent protein associated domain 23	LPD23
COG	UHGV-0058273_23	COG0503	N/A	N/A	Adenine/guanine phosphoribosyltransferase or related PRPP-binding protein	N/A
KOfam	UHGV-0058273_24	K16628	73.7	9e-22	COL7A; collagen type VII alpha	N/A
PHROG	UHGV-0058273_24	phrog_3904	89.7	1e-32	tail fiber protein	tail
eggNOG-mapper	UHGV-0058273_24	566552.BIFCAT_00854	79.7	0.0000000000000644	outer membrane autotransporter barrel domain protein	N/A
Pfam	UHGV-0058273_24	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
COG	UHGV-0058273_24	COG3468	N/A	N/A	Autotransporter adhesin AidA	N/A
PHROG	UHGV-0058273_25	phrog_8852	44.6	0.0000000000021	N/A	unknown function
PHROG	UHGV-0058273_26	phrog_134	41.5	0.000000000019	N/A	unknown function
Pfam	UHGV-0058273_26	PF09693	N/A	N/A	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
structural_annotation	UHGV-0058273_26	PF09693,TIGR01669	N/A	N/A	N/A	N/A
PHROG	UHGV-0058273_27	phrog_199	91.9	6.9e-27	holin	lysis
UniRef90	UHGV-0058273_27	UniRef90_A0A173VKF9	161.0	0	Holin	N/A
eggNOG-mapper	UHGV-0058273_27	1232453.BAIF02000059_gene1615	158.0	0	Bacteriophage holin family	N/A
Pfam	UHGV-0058273_27	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-0058273_27	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-0058273_27	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-0058273_27	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
KOfam	UHGV-0058273_28	K01448	111.7	8e-33	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0058273_28	phrog_435	133.6	1.8e-39	endolysin	lysis
UniRef90	UHGV-0058273_28	UniRef90_R6NQL7	162.0	5.60519e-45	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-0058273_28	1497679.EP56_07690	92.0	9.12e-19	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-0058273_28	PF01520	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_3
COG	UHGV-0058273_28	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
KOfam	UHGV-0058273_29	K14059	229.9	0	int; integrase	N/A
PHROG	UHGV-0058273_29	phrog_1	199.2	0	integrase	integration and excision
UniRef90	UHGV-0058273_29	UniRef90_A0A1C6GKE6	458.0	0	Tyrosine recombinase XerD	N/A
eggNOG-mapper	UHGV-0058273_29	428125.CLOLEP_02743	401.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0058273_29	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0058273_29	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0058273_29	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A