UHGV-0062920 (vOTU-000005)

Viral Genome: UHGV-0062920

Genome Information

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Overview
UHGV ID	UHGV-0062920
vOTU ID	vOTU-000005
Representative Genome?	Yes
Source	GPD
Original Genome ID	uvig_92839
Associated Biosample	SAMEA2467065
Viral Genome Confidence	Confident

Quality Assessment
CheckV Method	DTR
CheckV Completeness	100 (Complete)
Trimmed?	No
CheckV Viral Markers	13
CheckV Host Markers	0
Recoded?	No

Viral Content
geNomad score	0.9811
Viral Hallmark Genes (geNomad)	3
Plasmid Hallmark Genes (geNomad)	0
ViralVerify Prediction	Virus
ViralVerify Score	27.19
Jumbo Phage?	No

Genome Content
Length (bps)	90,218
GC Content	31.75%
Genetic Code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS Genes	79
CDS Density	93%
Average CDS Length (bps)	1,056.72
Total tRNA Genes	3
Suppressor tRNA Genes	0

Genome Content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0062920_1	phrog_1252	147.3	1.09301e-43	DNA polymerase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0062920_1	UniRef90_A0A7M1RZ98	366.0	0	DNA polymerase	N/A
eggNOG-mapper	UHGV-0062920_1	1133022.I6NPA3_9CAUD	76.6	0.00000000000232	nucleic acid binding	N/A
KOfam	UHGV-0062920_2	K21929	45.0	0.0000000000014	udg; uracil-DNA glycosylase [EC:3.2.2.27]	N/A
UniRef90	UHGV-0062920_2	UniRef90_A0A8F1B696	376.0	0	Uracil-DNA glycosylase	N/A
eggNOG-mapper	UHGV-0062920_2	1150621.SMUL_1205	66.6	0.000000000061	Uracil-DNA glycosylase	N/A
Pfam	UHGV-0062920_2	PF03167	N/A	N/A	Uracil DNA glycosylase superfamily	UDG
COG	UHGV-0062920_2	COG1573	N/A	N/A	Uracil-DNA glycosylase	N/A
structural_annotation	UHGV-0062920_2	PF03167,MF_01956,TIGR00758,COG1573	N/A	N/A	N/A	N/A
KOfam	UHGV-0062920_3	K21499	99.9	7.9e-34	dda; ATP-dependent DNA helicase [EC:5.6.2.3]	N/A
PHROG	UHGV-0062920_3	phrog_325	206.5	0	Dda-like helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0062920_3	UniRef90_A0A8F0WCR3	835.0	0	Exodeoxyribonuclease ATP-dependent DNA helicase	N/A
eggNOG-mapper	UHGV-0062920_3	573569.F7308_0635	200.0	0	PIF1-like helicase	N/A
Pfam	UHGV-0062920_3	PF14528	N/A	N/A	LAGLIDADG-like domain	LAGLIDADG_3
Pfam	UHGV-0062920_3	PF13604	N/A	N/A	AAA domain	AAA_30
Pfam	UHGV-0062920_3	PF01443	N/A	N/A	Viral (Superfamily 1) RNA helicase	Viral_helicase1
COG	UHGV-0062920_3	COG0507	N/A	N/A	ATPase/5'-3' helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V)	N/A
structural_annotation	UHGV-0062920_3	PF05203,PF13604,MF_01488,MF_01420,NF005852,TIGR01448,COG0507,COG1372	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0062920_6	PF18350,MF_00369,NF011236,COG2139	N/A	N/A	N/A	N/A
UniRef90	UHGV-0062920_7	UniRef90_A0A8F0WCT4	218.0	0	Putative preprotein translocase (YajC subunit)	N/A
structural_annotation	UHGV-0062920_7	PF18337,MF_01549,TIGR02097,COG4873	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0062920_14	PF17600	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0062920_16	PF11177	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0062920_17	PF17888,COG4687	N/A	N/A	N/A	N/A
UniRef90	UHGV-0062920_18	UniRef90_A0A8F0WCQ8	252.0	0	SH3 domain protein	N/A
UniRef90	UHGV-0062920_20	UniRef90_A0A8F0WCU4	127.0	8.28e-36	Putative Zn resistance-associated protein, putative lipopolysaccharide assembly protein	N/A
UniRef90	UHGV-0062920_21	UniRef90_A0A8F1B5L7	408.0	0	Proteasome subunit-like protein	N/A
PHROG	UHGV-0062920_24	phrog_298	92.7	3.1e-27	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0062920_24	UniRef90_A0A7M1RX50	179.0	0	DNA replication, ATP-dependent helicase	N/A
structural_annotation	UHGV-0062920_24	PF10926,MF_03030,TIGR00372,COG4343	N/A	N/A	N/A	N/A
PHROG	UHGV-0062920_26	phrog_3000	120.3	1.3e-35	N/A	unknown function
eggNOG-mapper	UHGV-0062920_26	1307437.J139_20217	127.0	5.55e-34	Peptidoglycan-binding domain 1 protein	N/A
COG	UHGV-0062920_26	COG3409	N/A	N/A	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	N/A
UniRef90	UHGV-0062920_28	UniRef90_A0A8F0WCN7	236.0	0	EIAV coat protein-like protein	N/A
PHROG	UHGV-0062920_30	phrog_6681	280.0	0	terminase large subunit	head and packaging
UniRef90	UHGV-0062920_30	UniRef90_A0A8F0WD39	1431.0	0	Terminase	N/A
structural_annotation	UHGV-0062920_30	PF03237,MF_04146,TIGR01547,COG4373	N/A	N/A	N/A	N/A
PHROG	UHGV-0062920_31	phrog_6547	226.9	0	portal protein	head and packaging
UniRef90	UHGV-0062920_31	UniRef90_A0A8F0WD06	1473.0	0	Phage portal protein	N/A
structural_annotation	UHGV-0062920_31	PF16510,MF_04120,TIGR01542,COG5518	N/A	N/A	N/A	N/A
PHROG	UHGV-0062920_33	phrog_11589	256.2	0	major head protein	head and packaging
UniRef90	UHGV-0062920_33	UniRef90_A0A8F0WCV6	980.0	0	Major capsid protein	N/A
structural_annotation	UHGV-0062920_33	PF17236,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0062920_35	PF20387	N/A	N/A	N/A	N/A
PHROG	UHGV-0062920_38	phrog_25620	43.1	0.00000000000019	tail collar fiber protein	tail
eggNOG-mapper	UHGV-0062920_38	1121286.AUMT01000001_gene63	62.4	0.000000546	N/A	N/A
UniRef90	UHGV-0062920_39	UniRef90_A0A8F1B680	94.7	1.61e-23	Putative outer capsid protein tail needle protein	N/A
UniRef90	UHGV-0062920_41	UniRef90_A0A8F0WCN6	385.0	0	Putative human gut microbiome secreted protein	N/A
eggNOG-mapper	UHGV-0062920_41	411901.BACCAC_01126	98.6	7.99e-23	Putative binding domain, N-terminal	N/A
Pfam	UHGV-0062920_41	PF13004	N/A	N/A	Putative binding domain, N-terminal	BACON
structural_annotation	UHGV-0062920_41	PF14874,NF041740,COG5513	N/A	N/A	N/A	N/A
UniRef90	UHGV-0062920_42	UniRef90_A0A843FUP4	157.0	6.37e-37	Ig-like domain-containing protein	N/A
eggNOG-mapper	UHGV-0062920_42	742725.HMPREF9450_00894	90.5	9.58e-16	N/A	N/A
structural_annotation	UHGV-0062920_42	PF02010,PF03921	N/A	N/A	N/A	N/A
UniRef90	UHGV-0062920_49	UniRef90_A0A8F0WCE8	131.0	2.07e-34	ATPase proteolipid family, phage shock protein B	N/A
structural_annotation	UHGV-0062920_49	PF11031,MF_04104,NF038250,COG2203	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0062920_50	PF20387	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0062920_52	PF20387	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0062920_53	PF11134,TIGR02658,COG3386	N/A	N/A	N/A	N/A
UniRef90	UHGV-0062920_54	UniRef90_A0A8F0WCQ3	1806.0	0	Putative endolysin/lysozyme	N/A
UniRef90	UHGV-0062920_57	UniRef90_A0A8F0WE83	555.0	0	Transcriptional regulator	N/A
PHROG	UHGV-0062920_59	phrog_9467	136.3	1.2e-40	N/A	unknown function
UniRef90	UHGV-0062920_59	UniRef90_A0A8F0WCX8	311.0	0	N/A	N/A
eggNOG-mapper	UHGV-0062920_59	1415774.U728_724	102.0	9.95e-26	Phage protein (N4 Gp49/phage Sf6 gene 66) family	N/A
Pfam	UHGV-0062920_59	PF13876	N/A	N/A	N/A	Phage_gp49_66
dbAPIS	UHGV-0062920_59	APIS043	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0062920_59	PF13876	N/A	N/A	N/A	N/A
KOfam	UHGV-0062920_60	K01520	90.1	1.8e-26	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	N/A
PHROG	UHGV-0062920_60	phrog_135	99.8	1.4e-29	dUTPase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0062920_60	UniRef90_A0A8F1B6F7	434.0	0	Deoxyuridine 5-triphosphate nucleotidohydrolase	N/A
eggNOG-mapper	UHGV-0062920_60	552525.B5LPN4_9CAUD	87.0	6.17e-19	dUTPase	N/A
Pfam	UHGV-0062920_60	PF00692	N/A	N/A	dUTPase	dUTPase
structural_annotation	UHGV-0062920_60	PF00692,MF_00116,TIGR00576,COG0756	N/A	N/A	N/A	N/A
PHROG	UHGV-0062920_62	phrog_1221	187.4	0	N/A	unknown function
UniRef90	UHGV-0062920_62	UniRef90_UPI001C5B9A3C	213.0	0	N/A	N/A
eggNOG-mapper	UHGV-0062920_62	1121897.AUGO01000005_gene190	205.0	0	Alpha beta hydrolase	N/A
Pfam	UHGV-0062920_62	PF06067	N/A	N/A	N/A	DUF932
NCBIFam	UHGV-0062920_62	TIGR03299.1	N/A	N/A	phage/plasmid-like protein TIGR03299	N/A
structural_annotation	UHGV-0062920_62	PF06067,TIGR03299	N/A	N/A	N/A	N/A
PHROG	UHGV-0062920_64	phrog_253	71.4	9.5e-21	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0062920_64	UniRef90_A0A8F1B622	454.0	0	Siphovirus Gp157-like/bacteriophage Mu Gam-like putative host-nuclease inhibitor protein Gam	N/A
Pfam	UHGV-0062920_64	PF05565	N/A	N/A	Siphovirus Gp157	Sipho_Gp157
structural_annotation	UHGV-0062920_64	PF11363	N/A	N/A	N/A	N/A
PHROG	UHGV-0062920_65	phrog_139	70.1	3.7e-20	deoxynucleoside monophosphate kinase	other
UniRef90	UHGV-0062920_65	UniRef90_A0A8F1B690	410.0	0	Putative deoxynucleoside monophosphate kinase, phosphomevalonate kinase, adenylate kinase	N/A
Pfam	UHGV-0062920_65	PF04275	N/A	N/A	Phosphomevalonate kinase	P-mevalo_kinase
structural_annotation	UHGV-0062920_65	PF21448,MF_00376,TIGR01223,COG0237	N/A	N/A	N/A	N/A
KOfam	UHGV-0062920_68	K03465	88.9	1.3e-28	thyX, thy1; thymidylate synthase (FAD) [EC:2.1.1.148]	N/A
PHROG	UHGV-0062920_68	phrog_85	49.3	8.6e-22	thymidylate synthase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0062920_68	UniRef90_A0A8F0WCN9	672.0	0	Putative thymidylate synthase	N/A
eggNOG-mapper	UHGV-0062920_68	1121403.AUCV01000001_gene965	102.0	6.52e-22	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor, and NADPH and FADH(2) as the reductant	N/A
Pfam	UHGV-0062920_68	PF02511	N/A	N/A	Thymidylate synthase complementing protein	Thy1
COG	UHGV-0062920_68	COG1351	N/A	N/A	Thymidylate synthase ThyX, FAD-dependent family	N/A
structural_annotation	UHGV-0062920_68	PF02511,MF_01408,TIGR02170,COG1351	N/A	N/A	N/A	N/A
KOfam	UHGV-0062920_70	K18951	72.9	3.6e-21	gp30; DNA ligase [EC:6.5.1.1]	N/A
PHROG	UHGV-0062920_70	phrog_114	137.4	8.99998e-41	ATP-dependent DNA ligase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0062920_70	UniRef90_A0A8F0WCS5	875.0	0	DNA ligase	N/A
eggNOG-mapper	UHGV-0062920_70	1300005.R9RGB5_9CAUD	88.6	2.42e-16	DNA ligase (ATP) activity	N/A
Pfam	UHGV-0062920_70	PF01068	N/A	N/A	ATP dependent DNA ligase domain	DNA_ligase_A_M
structural_annotation	UHGV-0062920_70	PF01068,PF00164,MF_00407,NF005796,COG1793	N/A	N/A	N/A	N/A
PHROG	UHGV-0062920_72	phrog_12622	100.6	9.1e-33	DNA primase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0062920_72	UniRef90_A0A8F0WD60	704.0	0	DNA primase	N/A
eggNOG-mapper	UHGV-0062920_72	1123058.KB894267_gene219	61.6	0.000000151	Toprim domain protein	N/A
COG	UHGV-0062920_72	COG0358	N/A	N/A	DNA primase (bacterial type)	N/A
structural_annotation	UHGV-0062920_72	PF09664,MF_01469,TIGR00646,COG4643	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0062920_75	TIGR01913	N/A	N/A	N/A	N/A
PHROG	UHGV-0062920_76	phrog_16	74.7	2e-22	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0062920_76	UniRef90_A0A8F0WEG2	963.0	0	Putative DNA-directed RNA polymerase, chromatin-remodeling complex ATPase	N/A
Pfam	UHGV-0062920_76	PF04851	N/A	N/A	Type III restriction enzyme, res subunit	ResIII
structural_annotation	UHGV-0062920_76	PF16203,PF08351,MF_01489,NF010337,COG1111	N/A	N/A	N/A	N/A
KOfam	UHGV-0062920_79	K02319	42.7	0.0000000000026	pol; DNA polymerase, archaea type [EC:2.7.7.7]	N/A
PHROG	UHGV-0062920_79	phrog_1252	224.8	0	DNA polymerase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0062920_79	UniRef90_A0A8F1B627	926.0	0	DNA polymerase	N/A
eggNOG-mapper	UHGV-0062920_79	1458669.W6B0U4_9CAUD	119.0	4.9e-26	nucleic acid binding	N/A