UHGV-0077336 (vOTU-064480)

Viral Genome: UHGV-0077336

Genome Information

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Overview
UHGV ID	UHGV-0077336
vOTU ID	vOTU-064480
Representative Genome?	Yes
Source	GPD
Original Genome ID	uvig_157347
Associated Biosample	N/A
Viral Genome Confidence	Confident

Quality Assessment
CheckV Method	AAI-based
CheckV Completeness	99.9 (High-quality)
Trimmed?	No
CheckV Viral Markers	14
CheckV Host Markers	1
Recoded?	No

Viral Content
geNomad score	0.9718
Viral Hallmark Genes (geNomad)	12
Plasmid Hallmark Genes (geNomad)	0
ViralVerify Prediction	Virus
ViralVerify Score	41.66
Jumbo Phage?	No

Genome Content
Length (bps)	29,573
GC Content	55.75%
Genetic Code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS Genes	44
CDS Density	92%
Average CDS Length (bps)	619.36
Total tRNA Genes	0
Suppressor tRNA Genes	0

Genome Content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-0077336_1	UniRef90_A0A1Q6RHU4	355.0	0	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0077336_1	1111134.HMPREF1253_0969	333.0	0	N/A	N/A
COG	UHGV-0077336_1	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
KOfam	UHGV-0077336_2	K14059	214.2	0	int; integrase	N/A
PHROG	UHGV-0077336_2	phrog_1	191.3	0	integrase	integration and excision
UniRef90	UHGV-0077336_2	UniRef90_UPI001958A27A	203.0	0	site-specific integrase	N/A
eggNOG-mapper	UHGV-0077336_2	1203606.HMPREF1526_00215	159.0	1.11964e-42	Phage integrase family	N/A
Pfam	UHGV-0077336_2	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-0077336_2	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0077336_2	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0077336_2	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-0077336_3	phrog_2158	221.4	0	abortive infection resistance protein	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0077336_3	UniRef90_UPI0015C1BB6E	272.0	0	Abi family protein	N/A
eggNOG-mapper	UHGV-0077336_3	748224.HMPREF9436_01377	265.0	0	Abi-like protein	N/A
PADLOC	UHGV-0077336_3	AbiD	280.7	0	AbiD	Abi
Pfam	UHGV-0077336_3	PF07751	N/A	N/A	Abi-like protein	Abi_2
COG	UHGV-0077336_3	COG4823	N/A	N/A	Abortive infection bacteriophage resistance protein	N/A
structural_annotation	UHGV-0077336_3	PF07751,COG4823	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0077336_4	1262449.CP6013_2082	136.0	3.66e-39	N/A	N/A
PHROG	UHGV-0077336_5	phrog_1914	101.2	4.6e-30	N/A	unknown function
UniRef90	UHGV-0077336_5	UniRef90_R6DVV5	241.0	0	Predicted Zn peptidase	N/A
eggNOG-mapper	UHGV-0077336_5	1160721.RBI_I01604	149.0	7.21669e-43	N/A	N/A
Pfam	UHGV-0077336_5	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-0077336_5	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-0077336_5	PF06114,COG2856	N/A	N/A	N/A	N/A
KOfam	UHGV-0077336_6	K22300	55.4	2.1e-32	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0077336_6	phrog_8	107.8	7.9e-32	transcriptional regulator	transcription regulation
UniRef90	UHGV-0077336_6	UniRef90_A0A8J8SBC4	77.8	0.0000000000000848	Helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-0077336_6	1121335.Clst_0369	77.8	5.33e-16	helix-turn-helix	N/A
Pfam	UHGV-0077336_6	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
Pfam	UHGV-0077336_6	PF15731	N/A	N/A	Antitoxin component of bacterial toxin-antitoxin system, MqsA	MqsA_antitoxin
NCBIFam	UHGV-0077336_6	TIGR03830.1	N/A	N/A	type II TA system antitoxin MqsA family protein	N/A
COG	UHGV-0077336_6	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0077336_6	PF01381,PF21291,NF041951,TIGR02607,COG3655,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0077336_7	phrog_8	56.6	6.3e-16	transcriptional regulator	transcription regulation
UniRef90	UHGV-0077336_7	UniRef90_A0A354M9E0	102.0	2.01e-25	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0077336_7	658659.HMPREF0983_03304	85.5	1.04e-19	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0077336_7	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
COG	UHGV-0077336_7	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0077336_7	PF13560,MF_00535,NF007257,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-0077336_8	phrog_3	40.2	0.00000000014	transcriptional repressor	transcription regulation
Pfam	UHGV-0077336_8	PF13560	N/A	N/A	Helix-turn-helix domain	HTH_31
structural_annotation	UHGV-0077336_8	PF05339,NF002773,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0077336_10	phrog_5663	51.2	0.000000000000008	N/A	unknown function
UniRef90	UHGV-0077336_10	UniRef90_A0A3E3E476	62.8	0.0000000089	N/A	N/A
Pfam	UHGV-0077336_10	PF10386	N/A	N/A	N/A	DUF2441
structural_annotation	UHGV-0077336_10	PF10386	N/A	N/A	N/A	N/A
KOfam	UHGV-0077336_16	K06284	114.1	9.3e-34	abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes	N/A
PHROG	UHGV-0077336_16	phrog_4681	98.7	2.4e-29	antitoxin from a toxin-antitoxin system	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0077336_16	UniRef90_UPI0018F33479	111.0	2.58e-30	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	N/A
eggNOG-mapper	UHGV-0077336_16	268407.PWYN_12320	105.0	1.09e-28	AbrB family transcriptional regulator	N/A
Pfam	UHGV-0077336_16	PF04014	N/A	N/A	Antidote-toxin recognition MazE, bacterial antitoxin	MazE_antitoxin
NCBIFam	UHGV-0077336_16	TIGR01439.1	N/A	N/A	transcriptional regulator, AbrB family	N/A
COG	UHGV-0077336_16	COG2002	N/A	N/A	Bifunctional DNA-binding transcriptional regulator of stationary/sporulation/toxin gene expression and antitoxin component of the YhaV-PrlF toxin-antitoxin module	N/A
structural_annotation	UHGV-0077336_16	PF15937,TIGR01439,NF004424,COG2002	N/A	N/A	N/A	N/A
PHROG	UHGV-0077336_19	phrog_3584	131.1	8.9e-39	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0077336_19	411470.RUMGNA_02047	138.0	2.07e-36	N/A	N/A
structural_annotation	UHGV-0077336_19	PF21578	N/A	N/A	N/A	N/A
KOfam	UHGV-0077336_20	K03700	87.7	1.8e-25	recU; recombination protein U	N/A
PHROG	UHGV-0077336_20	phrog_843	137.9	3.89995e-41	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0077336_20	UniRef90_A0A1H0W5Y9	162.0	0	Holliday junction resolvase RecU	N/A
eggNOG-mapper	UHGV-0077336_20	537013.CLOSTMETH_01720	152.0	3.92364e-44	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation	N/A
Pfam	UHGV-0077336_20	PF03838	N/A	N/A	Recombination protein U	RecU
COG	UHGV-0077336_20	COG3331	N/A	N/A	Penicillin-binding protein-related factor A, putative recombinase	N/A
structural_annotation	UHGV-0077336_20	PF03838,MF_00130,NF002581,COG3331	N/A	N/A	N/A	N/A
PHROG	UHGV-0077336_21	phrog_38338	70.4	3.2e-20	N/A	unknown function
UniRef90	UHGV-0077336_21	UniRef90_UPI00137B3A8C	78.2	8.55e-16	Cas9 inhibitor AcrIIA9 family protein	N/A
eggNOG-mapper	UHGV-0077336_21	693746.OBV_25410	95.5	7.2e-24	N/A	N/A
PHROG	UHGV-0077336_22	phrog_8470	461.3	0	N/A	unknown function
UniRef90	UHGV-0077336_22	UniRef90_UPI001C1063FF	261.0	0	PcfJ domain-containing protein	N/A
eggNOG-mapper	UHGV-0077336_22	1378168.N510_01842	218.0	0	PcfJ-like protein	N/A
Pfam	UHGV-0077336_22	PF14284	N/A	N/A	PcfJ-like protein	PcfJ
structural_annotation	UHGV-0077336_22	PF14284	N/A	N/A	N/A	N/A
PHROG	UHGV-0077336_23	phrog_15609	329.7	0	N/A	unknown function
UniRef90	UHGV-0077336_23	UniRef90_UPI001F176669	118.0	8.62e-28	N/A	N/A
eggNOG-mapper	UHGV-0077336_23	1378168.N510_01841	121.0	7.38e-29	N/A	N/A
Pfam	UHGV-0077336_23	PF11300	N/A	N/A	N/A	DUF3102
COG	UHGV-0077336_23	COG2433	N/A	N/A	Possible nuclease of RNase H fold, RuvC/YqgF family	N/A
structural_annotation	UHGV-0077336_23	PF11300,PF07321,NF038070	N/A	N/A	N/A	N/A
PHROG	UHGV-0077336_24	phrog_5781	66.2	5.2e-19	N/A	unknown function
UniRef90	UHGV-0077336_24	UniRef90_A0A810Q4L2	111.0	1.08e-28	N/A	N/A
eggNOG-mapper	UHGV-0077336_24	1048834.TC41_1868	58.5	0.00000000574	N/A	N/A
Pfam	UHGV-0077336_24	PF14359	N/A	N/A	N/A	DUF4406
structural_annotation	UHGV-0077336_24	PF14359,MF_03036,TIGR03646,COG3613	N/A	N/A	N/A	N/A
PHROG	UHGV-0077336_25	phrog_36	60.9	2.6e-17	transcriptional regulator	transcription regulation
UniRef90	UHGV-0077336_25	UniRef90_UPI001C10AB33	123.0	3.24e-33	N/A	N/A
eggNOG-mapper	UHGV-0077336_25	428125.CLOLEP_01806	105.0	6.6e-27	N/A	N/A
Pfam	UHGV-0077336_25	PF07374	N/A	N/A	N/A	DUF1492
structural_annotation	UHGV-0077336_25	PF07374,TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-0077336_26	phrog_17658	54.3	0.0000000000000029	N/A	unknown function
eggNOG-mapper	UHGV-0077336_26	536233.CLO_0894	70.5	0.000000000000507	N/A	N/A
structural_annotation	UHGV-0077336_26	PF18116	N/A	N/A	N/A	N/A
UniRef90	UHGV-0077336_27	UniRef90_UPI0009BF3675	63.9	0.000000000012	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0077336_27	561177.ANHYDRO_01404	58.9	0.000000000215	HNH nucleases	N/A
COG	UHGV-0077336_27	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-0077336_28	phrog_1066	83.2	2.9e-24	N/A	unknown function
eggNOG-mapper	UHGV-0077336_28	411470.RUMGNA_02061	100.0	1.57e-25	N/A	N/A
structural_annotation	UHGV-0077336_28	PF05119,TIGR01558	N/A	N/A	N/A	N/A
PHROG	UHGV-0077336_29	phrog_9	341.0	0	terminase large subunit	head and packaging
UniRef90	UHGV-0077336_29	UniRef90_A0A2V2GHH0	948.0	0	Terminase large subunit	N/A
eggNOG-mapper	UHGV-0077336_29	742740.HMPREF9474_04307	751.0	0	COG COG4626 Phage terminase-like protein, large subunit	N/A
Pfam	UHGV-0077336_29	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0077336_29	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0077336_29	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0077336_29	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0077336_30	phrog_12	104.3	1e-30	portal protein	head and packaging
UniRef90	UHGV-0077336_30	UniRef90_A0A2V2GK98	592.0	0	Portal protein	N/A
eggNOG-mapper	UHGV-0077336_30	411471.SUBVAR_05850	389.0	0	Phage portal protein	N/A
Pfam	UHGV-0077336_30	PF04860	N/A	N/A	Phage portal protein	Phage_portal
COG	UHGV-0077336_30	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0077336_30	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-0077336_31	K06904	87.4	2.5e-25	N/A	N/A
PHROG	UHGV-0077336_31	phrog_80	98.9	8e-29	head maturation protease	head and packaging
UniRef90	UHGV-0077336_31	UniRef90_A0A2V2GKJ3	285.0	0	HK97 family phage prohead protease	N/A
eggNOG-mapper	UHGV-0077336_31	1321814.HMPREF9089_00929	206.0	0	Caudovirus prohead serine protease	N/A
Pfam	UHGV-0077336_31	PF04586	N/A	N/A	Caudovirus prohead serine protease	Peptidase_S78
COG	UHGV-0077336_31	COG3740	N/A	N/A	Phage head maturation protease	N/A
structural_annotation	UHGV-0077336_31	PF04586,TIGR01543,COG3740	N/A	N/A	N/A	N/A
PHROG	UHGV-0077336_32	phrog_10	171.8	0	major head protein	head and packaging
UniRef90	UHGV-0077336_32	UniRef90_A0A2V2GLX5	465.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0077336_32	1094508.Tsac_2424	169.0	1.4013e-45	Phage capsid family	N/A
Pfam	UHGV-0077336_32	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0077336_32	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0077336_32	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0077336_32	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0077336_33	phrog_5223	81.6	6.2e-24	neck protein	connector
UniRef90	UHGV-0077336_33	UniRef90_UPI000BEC4770	77.0	2.01e-16	head-tail connector protein	N/A
eggNOG-mapper	UHGV-0077336_33	411465.PEPMIC_00737	62.4	0.0000000000195	N/A	N/A
NCBIFam	UHGV-0077336_33	TIGR01560.2	N/A	N/A	head-tail connector protein	N/A
structural_annotation	UHGV-0077336_33	TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-0077336_34	phrog_1951	66.4	3.5e-19	head-tail adaptor	connector
UniRef90	UHGV-0077336_34	UniRef90_UPI00189BA764	77.0	2.18e-16	phage head closure protein	N/A
eggNOG-mapper	UHGV-0077336_34	1121428.DESHY_20140___1	58.2	0.00000000088	head-tail adaptor	N/A
COG	UHGV-0077336_34	COG5614	N/A	N/A	Phage head-tail adaptor	N/A
structural_annotation	UHGV-0077336_34	PF05354,TIGR01563,COG5614	N/A	N/A	N/A	N/A
UniRef90	UHGV-0077336_35	UniRef90_A0A3A6N4L9	80.9	5.26e-17	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0077336_35	1033744.CAEL01000029_gene1278	63.9	0.0000000000306	N/A	N/A
structural_annotation	UHGV-0077336_35	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0077336_36	PF05657	N/A	N/A	N/A	N/A
PHROG	UHGV-0077336_37	phrog_2175	69.2	7.2e-20	protein with Ig domain	other
eggNOG-mapper	UHGV-0077336_37	1219626.HMPREF1639_07450	195.0	0	N/A	N/A
structural_annotation	UHGV-0077336_37	PF04630,TIGR01603,COG5437	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0077336_38	PF17388	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0077336_39	1219626.HMPREF1639_07460	91.3	7.34e-23	N/A	N/A
PHROG	UHGV-0077336_40	phrog_23464	309.9	0	N/A	unknown function
UniRef90	UHGV-0077336_40	UniRef90_A0A1C6H5M9	271.0	0	Phage-related minor tail protein	N/A
eggNOG-mapper	UHGV-0077336_40	665950.HMPREF1025_02660	206.0	0	phage tail tape measure protein	N/A
COG	UHGV-0077336_40	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-0077336_40	PF20155,COG5280	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0077336_41	610130.Closa_0753	61.6	0.0000000375	phage tail	N/A
COG	UHGV-0077336_41	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0077336_41	PF16774,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0077336_42	phrog_3558	204.2	0	tail protein	tail
UniRef90	UHGV-0077336_42	UniRef90_A0A3D1VAY1	503.0	0	Prophage_tail domain-containing protein	N/A
eggNOG-mapper	UHGV-0077336_42	1120933.ATUY01000002_gene164	137.0	1.02e-31	Prophage endopeptidase tail	N/A
Pfam	UHGV-0077336_42	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0077336_42	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0077336_42	COG4926	N/A	N/A	Phage-related protein	N/A
KOfam	UHGV-0077336_43	K01447	69.7	6.3e-20	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0077336_43	phrog_5182	193.2	0	endolysin	lysis
UniRef90	UHGV-0077336_43	UniRef90_R5AZE6	509.0	0	N-acetylmuramoyl-L-alanine amidase family 2	N/A
eggNOG-mapper	UHGV-0077336_43	397288.C806_00777	197.0	0	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	N/A
Pfam	UHGV-0077336_43	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
Pfam	UHGV-0077336_43	PF00395	N/A	N/A	S-layer homology domain	SLH
COG	UHGV-0077336_43	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0077336_43	PF01510,MF_04111,NF008758,COG5632	N/A	N/A	N/A	N/A
PHROG	UHGV-0077336_44	phrog_199	65.9	5.2e-19	holin	lysis
UniRef90	UHGV-0077336_44	UniRef90_R5AT18	298.0	0	Toxin secretion/phage lysis holin	N/A
eggNOG-mapper	UHGV-0077336_44	1121344.JHZO01000003_gene684	151.0	5.60519e-45	toxin secretion phage lysis holin	N/A
Pfam	UHGV-0077336_44	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-0077336_44	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-0077336_44	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-0077336_44	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A