UHGV-0084413 (vOTU-107364)

Viral Genome: UHGV-0084413

Genome Information

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Overview
UHGV ID	UHGV-0084413
vOTU ID	vOTU-107364
Representative Genome?	Yes
Source	GPD
Original Genome ID	uvig_147371
Associated Biosample	SAMEA2737796
Viral Genome Confidence	Confident

Quality Assessment
CheckV Method	AAI-based
CheckV Completeness	53.03 (Medium-quality)
Trimmed?	Yes
CheckV Viral Markers	12
CheckV Host Markers	3
Recoded?	No

Viral Content
geNomad score	0.9723
Viral Hallmark Genes (geNomad)	8
Plasmid Hallmark Genes (geNomad)	0
ViralVerify Prediction	Virus
ViralVerify Score	25.37
Jumbo Phage?	No

Genome Content
Length (bps)	23,291
GC Content	47.13%
Genetic Code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS Genes	39
CDS Density	94%
Average CDS Length (bps)	559.31
Total tRNA Genes	0
Suppressor tRNA Genes	0

Genome Content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 53.03)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
eggNOG-mapper	UHGV-0084413_1	411902.CLOBOL_05696	142.0	1.69e-36	N/A	N/A
PHROG	UHGV-0084413_2	phrog_7566	109.4	1.5e-32	N/A	unknown function
eggNOG-mapper	UHGV-0084413_2	411902.CLOBOL_05695	114.0	4.94e-32	N/A	N/A
KOfam	UHGV-0084413_4	K03111	118.9	6.9e-35	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0084413_4	phrog_44	122.7	3.3e-36	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0084413_4	UniRef90_A0A413LPL3	226.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0084413_4	457421.CBFG_04823	225.0	0	Single-strand binding protein family	N/A
Pfam	UHGV-0084413_4	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0084413_4	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0084413_4	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0084413_4	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0084413_4	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
KOfam	UHGV-0084413_6	K03427	57.2	2.9e-16	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	N/A
PHROG	UHGV-0084413_6	phrog_5696	222.3	0	N/A	unknown function
UniRef90	UHGV-0084413_6	UniRef90_A0A417QIL3	311.0	0	SAM-dependent DNA methyltransferase	N/A
eggNOG-mapper	UHGV-0084413_6	395019.Bmul_5588	145.0	1.8e-39	N-6 DNA Methylase	N/A
PADLOC	UHGV-0084413_6	MTase_I_00005	47.5	0.00000000000025	Type I methyltransferase	RM
Pfam	UHGV-0084413_6	PF02384	N/A	N/A	N-6 DNA Methylase	N6_Mtase
COG	UHGV-0084413_6	COG0286	N/A	N/A	Type I restriction-modification system, DNA methylase subunit	N/A
structural_annotation	UHGV-0084413_6	COG0286	N/A	N/A	N/A	N/A
KOfam	UHGV-0084413_7	K04763	215.5	0	xerD; integrase/recombinase XerD	N/A
PHROG	UHGV-0084413_7	phrog_1	171.4	0	integrase	integration and excision
UniRef90	UHGV-0084413_7	UniRef90_A0A6P1MI99	282.0	0	Tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-0084413_7	1384065.JAGS01000001_gene3088	262.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0084413_7	PF13495	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
Pfam	UHGV-0084413_7	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0084413_7	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0084413_7	PF00589,PF13495,MF_01808,TIGR02224,COG4973	N/A	N/A	N/A	N/A
PHROG	UHGV-0084413_9	phrog_4572	78.6	6.8e-23	N/A	unknown function
eggNOG-mapper	UHGV-0084413_9	411902.CLOBOL_05688	126.0	2.73e-36	N/A	N/A
PHROG	UHGV-0084413_10	phrog_15198	41.6	0.000000000016	N/A	unknown function
UniRef90	UHGV-0084413_10	UniRef90_UPI001897C27C	134.0	3.84e-38	N/A	N/A
eggNOG-mapper	UHGV-0084413_10	411462.DORLON_00804	89.0	2.01e-21	N/A	N/A
Pfam	UHGV-0084413_10	PF04448	N/A	N/A	N/A	DUF551
structural_annotation	UHGV-0084413_10	PF04448,NF041588	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0084413_11	411902.CLOBOL_05681	106.0	5.75e-30	N/A	N/A
UniRef90	UHGV-0084413_13	UniRef90_UPI001AA0DAEC	95.1	4.91e-24	zinc ribbon domain-containing protein	N/A
structural_annotation	UHGV-0084413_13	PF13248	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0084413_14	PF13248	N/A	N/A	N/A	N/A
Pfam	UHGV-0084413_16	PF04448	N/A	N/A	N/A	DUF551
eggNOG-mapper	UHGV-0084413_17	476272.RUMHYD_01746	75.9	6.78e-17	N/A	N/A
PHROG	UHGV-0084413_18	phrog_21101	47.0	0.00000000000014	N/A	unknown function
UniRef90	UHGV-0084413_18	UniRef90_UPI001C02123C	108.0	4.03e-29	N/A	N/A
eggNOG-mapper	UHGV-0084413_18	1280694.AUJQ01000001_gene1926	86.7	3.62e-21	N/A	N/A
Pfam	UHGV-0084413_18	PF07866	N/A	N/A	N/A	DUF1653
COG	UHGV-0084413_18	COG4728	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0084413_18	PF07866,COG4728	N/A	N/A	N/A	N/A
PHROG	UHGV-0084413_21	phrog_11237	97.1	1.5e-28	N/A	unknown function
eggNOG-mapper	UHGV-0084413_21	610130.Closa_0738	176.0	0	N/A	N/A
KOfam	UHGV-0084413_22	K23779	49.7	0.000000000000082	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	N/A
UniRef90	UHGV-0084413_22	UniRef90_A0A3E2WBX1	110.0	1.71e-30	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0084413_22	1304866.K413DRAFT_0788	79.7	3.26e-19	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0084413_22	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0084413_22	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0084413_24	K22014	56.6	4.9e-16	Nu1, Noh; terminase small subunit / prophage DNA-packing protein	N/A
PHROG	UHGV-0084413_24	phrog_57	122.4	4e-36	terminase small subunit	head and packaging
UniRef90	UHGV-0084413_24	UniRef90_A0A7X5D9S2	249.0	0	DNA-packaging protein	N/A
eggNOG-mapper	UHGV-0084413_24	1415774.U728_495	194.0	0	N/A	N/A
COG	UHGV-0084413_24	COG4220	N/A	N/A	Phage DNA packaging protein, Nu1 subunit of terminase	N/A
structural_annotation	UHGV-0084413_24	PF07471,NF040990,COG4220	N/A	N/A	N/A	N/A
KOfam	UHGV-0084413_25	K21512	375.7	0	gpA; terminase, large subunit [EC:3.1.21.4]	N/A
PHROG	UHGV-0084413_25	phrog_15	482.5	0	terminase large subunit	head and packaging
UniRef90	UHGV-0084413_25	UniRef90_A0A7X5D9U1	998.0	0	Phage terminase large subunit family protein	N/A
eggNOG-mapper	UHGV-0084413_25	1211817.CCAT010000013_gene3188	814.0	0	Phage terminase large subunit (GpA)	N/A
Pfam	UHGV-0084413_25	PF05876	N/A	N/A	Phage terminase large subunit gpA, ATPase domain	GpA_ATPase
Pfam	UHGV-0084413_25	PF20454	N/A	N/A	Terminase large subunit gpA, endonuclease domain	GpA_nuclease
COG	UHGV-0084413_25	COG5525	N/A	N/A	Phage terminase, large subunit GpA	N/A
HAMAP	UHGV-0084413_25	MF_04144	N/A	N/A	Terminase, large subunit	N/A
structural_annotation	UHGV-0084413_25	PF05876,PF20454,MF_04144,TIGR01547,COG5525	N/A	N/A	N/A	N/A
PHROG	UHGV-0084413_26	phrog_118	53.6	0.0000000000000028	head-tail adaptor	connector
UniRef90	UHGV-0084413_26	UniRef90_A0A3R6W5F4	107.0	5.69e-29	Peptidylprolyl isomerase	N/A
eggNOG-mapper	UHGV-0084413_26	97139.C824_03383	80.9	2.74e-19	N/A	N/A
structural_annotation	UHGV-0084413_26	PF19645	N/A	N/A	N/A	N/A
PHROG	UHGV-0084413_27	phrog_21	255.3	0	portal protein	head and packaging
UniRef90	UHGV-0084413_27	UniRef90_A0A416UB88	771.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0084413_27	887325.HMPREF0381_0384	667.0	0	Phage portal protein, lambda family	N/A
Pfam	UHGV-0084413_27	PF05136	N/A	N/A	Phage portal protein, lambda family	Phage_portal_2
NCBIFam	UHGV-0084413_27	TIGR01539.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0084413_27	COG5511	N/A	N/A	Phage capsid protein	N/A
structural_annotation	UHGV-0084413_27	PF05136,MF_04135,TIGR01539,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0084413_28	K06904	40.9	0.000000000028	N/A	N/A
PHROG	UHGV-0084413_28	phrog_4523	154.4	1.4013e-45	major head and protease protein	head and packaging
UniRef90	UHGV-0084413_28	UniRef90_A0A3R6NYP7	292.0	0	Caudovirus prohead protease	N/A
eggNOG-mapper	UHGV-0084413_28	887325.HMPREF0381_0385	258.0	0	Caudovirus prohead serine protease	N/A
Pfam	UHGV-0084413_28	PF04586	N/A	N/A	Caudovirus prohead serine protease	Peptidase_S78
COG	UHGV-0084413_28	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0084413_28	PF04586,TIGR01543,COG3740	N/A	N/A	N/A	N/A
PHROG	UHGV-0084413_29	phrog_4523	351.0	0	major head and protease protein	head and packaging
UniRef90	UHGV-0084413_29	UniRef90_A0A3R6PC94	699.0	0	Mu-like_gpT domain-containing protein	N/A
eggNOG-mapper	UHGV-0084413_29	478749.BRYFOR_07537	603.0	0	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides	N/A
Pfam	UHGV-0084413_29	PF10124	N/A	N/A	Mu-like prophage major head subunit gpT	Mu-like_gpT
COG	UHGV-0084413_29	COG3087	N/A	N/A	Cell division protein FtsN	N/A
structural_annotation	UHGV-0084413_29	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0084413_30	phrog_122	71.1	7.7e-23	head decoration	head and packaging
UniRef90	UHGV-0084413_30	UniRef90_UPI001F383563	105.0	8.99e-27	N/A	N/A
eggNOG-mapper	UHGV-0084413_30	478749.BRYFOR_07538	81.6	3.04e-18	N/A	N/A
Pfam	UHGV-0084413_30	PF09956	N/A	N/A	N/A	DUF2190
structural_annotation	UHGV-0084413_30	PF09956,COG5471	N/A	N/A	N/A	N/A
KOfam	UHGV-0084413_31	K24213	46.4	0.00000000000046	C1QTNF9; complement C1q and tumor necrosis factor-related protein 9	N/A
PHROG	UHGV-0084413_31	phrog_34916	51.4	0.0000000000000013	tail fiber protein	tail
UniRef90	UHGV-0084413_31	UniRef90_UPI0018A8F63F	67.8	0.00000000000379	collagen-like protein	N/A
eggNOG-mapper	UHGV-0084413_31	1203606.HMPREF1526_01905	72.4	0.000000000000012	Collagen triple helix repeat (20 copies)	N/A
Pfam	UHGV-0084413_31	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
COG	UHGV-0084413_31	COG3266	N/A	N/A	Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain	N/A
structural_annotation	UHGV-0084413_31	PF18313	N/A	N/A	N/A	N/A
PHROG	UHGV-0084413_32	phrog_2551	101.2	6.8e-30	minor tail protein	tail
UniRef90	UHGV-0084413_32	UniRef90_A0A318EKR9	124.0	1.1e-34	ATP-binding sugar transporter Gifsy-2	N/A
eggNOG-mapper	UHGV-0084413_32	411470.RUMGNA_00232	112.0	9.01e-31	ATP-binding sugar transporter from pro-phage	N/A
structural_annotation	UHGV-0084413_32	PF13856	N/A	N/A	N/A	N/A
PHROG	UHGV-0084413_33	phrog_27	81.0	1.9e-23	tail completion or Neck1 protein	connector
UniRef90	UHGV-0084413_33	UniRef90_UPI001F326504	194.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-0084413_33	478749.BRYFOR_07541	152.0	6.16571e-44	N/A	N/A
Pfam	UHGV-0084413_33	PF06763	N/A	N/A	Prophage minor tail protein Z (GPZ)	Minor_tail_Z
structural_annotation	UHGV-0084413_33	PF06763	N/A	N/A	N/A	N/A
PHROG	UHGV-0084413_34	phrog_2581	74.0	1.7e-21	virion structural protein	head and packaging
eggNOG-mapper	UHGV-0084413_34	1235793.C809_02667	62.8	0.000000000395	N/A	N/A
structural_annotation	UHGV-0084413_34	PF08873	N/A	N/A	N/A	N/A
PHROG	UHGV-0084413_35	phrog_17039	63.6	2.6e-18	N/A	unknown function
eggNOG-mapper	UHGV-0084413_35	610130.Closa_0845	83.6	2.91e-20	N/A	N/A
KOfam	UHGV-0084413_36	K06907	97.1	1.7e-28	N/A	N/A
PHROG	UHGV-0084413_36	phrog_23	159.2	0	tail sheath	tail
UniRef90	UHGV-0084413_36	UniRef90_A0A3R6R7S4	759.0	0	Phage tail sheath family protein	N/A
eggNOG-mapper	UHGV-0084413_36	610130.Closa_0846	671.0	0	COG3497 Phage tail sheath protein FI	N/A
COG	UHGV-0084413_36	COG3497	N/A	N/A	Phage tail sheath protein FI	N/A
structural_annotation	UHGV-0084413_36	PF10758,TIGR03355,COG3497	N/A	N/A	N/A	N/A
KOfam	UHGV-0084413_37	K06908	107.3	1.9e-31	N/A	N/A
PHROG	UHGV-0084413_37	phrog_55	124.3	6.3e-37	head closure	connector
UniRef90	UHGV-0084413_37	UniRef90_A0A7X2TC80	296.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-0084413_37	610130.Closa_0847	253.0	0	Phage tail tube protein FII	N/A
Pfam	UHGV-0084413_37	PF04985	N/A	N/A	Phage tail tube protein FII	Phage_tube
COG	UHGV-0084413_37	COG3498	N/A	N/A	Phage tail tube protein FII	N/A
structural_annotation	UHGV-0084413_37	PF04985,TIGR01611,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-0084413_38	phrog_3140	51.6	0.000000000000017	tail assembly chaperone	tail
UniRef90	UHGV-0084413_38	UniRef90_A0A3R6RY94	132.0	3.8e-38	Phage tail assembly protein	N/A
eggNOG-mapper	UHGV-0084413_38	665959.HMPREF1013_00834	49.3	0.00000369	Phage tail assembly chaperone proteins, E, or 41 or 14	N/A
Pfam	UHGV-0084413_38	PF10109	N/A	N/A	Phage tail assembly chaperone proteins, E, or 41 or 14	Phage_TAC_7
structural_annotation	UHGV-0084413_38	PF10109	N/A	N/A	N/A	N/A
PHROG	UHGV-0084413_39	phrog_19074	470.2	0	N/A	unknown function
UniRef90	UHGV-0084413_39	UniRef90_A0A416UB27	1074.0	0	Phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-0084413_39	1203606.HMPREF1526_01348	320.0	0	phage tail tape measure protein	N/A
Pfam	UHGV-0084413_39	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-0084413_39	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-0084413_39	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
structural_annotation	UHGV-0084413_39	PF10145,PF12026,TIGR01760,COG5280	N/A	N/A	N/A	N/A