UHGV-0085310 (vOTU-069101)

Viral Genome: UHGV-0085310

Genome Information

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Overview
UHGV ID	UHGV-0085310
vOTU ID	vOTU-069101
Representative Genome?	Yes
Source	GPD
Original Genome ID	uvig_149774
Associated Biosample	SAMEA2784488
Viral Genome Confidence	Confident

Quality Assessment
CheckV Method	AAI-based
CheckV Completeness	93.22 (High-quality)
Trimmed?	Yes
CheckV Viral Markers	19
CheckV Host Markers	2
Recoded?	No

Viral Content
geNomad score	0.9783
Viral Hallmark Genes (geNomad)	8
Plasmid Hallmark Genes (geNomad)	0
ViralVerify Prediction	Virus
ViralVerify Score	65.82
Jumbo Phage?	No

Genome Content
Length (bps)	34,087
GC Content	46.27%
Genetic Code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS Genes	51
CDS Density	92%
Average CDS Length (bps)	614.94
Total tRNA Genes	1
Suppressor tRNA Genes	0

Genome Content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 93.22)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0085310_1	K01185	157.6	0	E3.2.1.17; lysozyme [EC:3.2.1.17]	N/A
PHROG	UHGV-0085310_1	phrog_7	181.1	0	endolysin	lysis
UniRef90	UHGV-0085310_1	UniRef90_C7GBY9	299.0	0	Lysozyme	N/A
eggNOG-mapper	UHGV-0085310_1	693746.OBV_20240	163.0	0	Phage lysozyme	N/A
Pfam	UHGV-0085310_1	PF00959	N/A	N/A	Phage lysozyme	Phage_lysozyme
Pfam	UHGV-0085310_1	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-0085310_1	COG3772	N/A	N/A	Phage-related lysozyme (muramidase), GH24 family	N/A
HAMAP	UHGV-0085310_1	MF_04110	N/A	N/A	Endolysin	N/A
structural_annotation	UHGV-0085310_1	PF01471,PF00959,MF_04110,COG3772,COG3409	N/A	N/A	N/A	N/A
PHROG	UHGV-0085310_2	phrog_443	64.9	2.2e-18	holin	lysis
UniRef90	UHGV-0085310_2	UniRef90_UPI001C0212A6	133.0	1.88e-39	holin	N/A
eggNOG-mapper	UHGV-0085310_2	411490.ANACAC_00704	85.5	3.04e-21	Putative lactococcus lactis phage r1t holin	N/A
Pfam	UHGV-0085310_2	PF16945	N/A	N/A	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
structural_annotation	UHGV-0085310_2	PF16945	N/A	N/A	N/A	N/A
PHROG	UHGV-0085310_3	phrog_1863	69.3	3.7e-20	N/A	unknown function
eggNOG-mapper	UHGV-0085310_3	665956.HMPREF1032_03922	104.0	2.47e-28	N/A	N/A
PHROG	UHGV-0085310_4	phrog_21765	42.6	0.0000000000084	N/A	unknown function
eggNOG-mapper	UHGV-0085310_4	483218.BACPEC_01141	81.6	0.000000000000334	N/A	N/A
Pfam	UHGV-0085310_4	PF13884	N/A	N/A	Chaperone of endosialidase	Peptidase_S74
PHROG	UHGV-0085310_5	phrog_9886	603.3	0	N/A	unknown function
UniRef90	UHGV-0085310_5	UniRef90_A0A358PQV6	617.0	0	Prophage_tail domain-containing protein	N/A
eggNOG-mapper	UHGV-0085310_5	1235792.C808_03048	508.0	0	Prophage endopeptidase tail	N/A
Pfam	UHGV-0085310_5	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
Pfam	UHGV-0085310_5	PF13884	N/A	N/A	Chaperone of endosialidase	Peptidase_S74
NCBIFam	UHGV-0085310_5	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0085310_5	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0085310_5	PF06605,PF21683,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0085310_6	phrog_33	44.3	0.0000000000023	distal tail protein Dit	tail
UniRef90	UHGV-0085310_6	UniRef90_A0A174GX45	251.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0085310_6	1235792.C808_05378	217.0	0	N/A	N/A
structural_annotation	UHGV-0085310_6	PF05709,PF02408,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0085310_7	phrog_6900	253.6	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0085310_7	1499683.CCFF01000017_gene2565	297.0	0	tape measure	N/A
COG	UHGV-0085310_7	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0085310_7	PF20155,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0085310_8	phrog_706	109.8	1.7e-32	N/A	unknown function
UniRef90	UHGV-0085310_8	UniRef90_UPI00156EC658	171.0	0	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-0085310_8	1125725.HMPREF1325_1338	121.0	2.61e-32	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0085310_8	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0085310_8	PF06854	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0085310_9	PF16462	N/A	N/A	N/A	N/A
PHROG	UHGV-0085310_10	phrog_3099	87.1	2.5e-25	N/A	unknown function
eggNOG-mapper	UHGV-0085310_10	1539298.JO41_08150	114.0	1.23e-29	N/A	N/A
PHROG	UHGV-0085310_11	phrog_3266	73.1	3.7e-21	tail completion	connector
structural_annotation	UHGV-0085310_11	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-0085310_12	phrog_556	91.5	7.1e-27	minor head protein	head and packaging
UniRef90	UHGV-0085310_12	UniRef90_UPI001A9B9821	115.0	6.47e-31	capsid protein	N/A
eggNOG-mapper	UHGV-0085310_12	525255.HMPREF0077_0381	109.0	2.59e-29	Minor capsid protein	N/A
Pfam	UHGV-0085310_12	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0085310_12	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-0085310_13	phrog_3366	99.8	2.5e-29	N/A	unknown function
eggNOG-mapper	UHGV-0085310_13	411462.DORLON_00784	53.5	0.000000576	N/A	N/A
Pfam	UHGV-0085310_13	PF20536	N/A	N/A	N/A	DUF6751
structural_annotation	UHGV-0085310_13	PF20536	N/A	N/A	N/A	N/A
PHROG	UHGV-0085310_14	phrog_541	72.5	5e-21	head-tail adaptor	connector
PHROG	UHGV-0085310_16	phrog_422	216.7	0	major head protein	head and packaging
UniRef90	UHGV-0085310_16	UniRef90_W0U896	288.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0085310_16	1235794.C811_01371	311.0	0	N/A	N/A
structural_annotation	UHGV-0085310_16	PF21703,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
PHROG	UHGV-0085310_17	phrog_194	71.9	1.2e-20	head scaffolding protein	head and packaging
UniRef90	UHGV-0085310_17	UniRef90_A0A173RNU4	222.0	0	Phage minor structural protein GP20	N/A
eggNOG-mapper	UHGV-0085310_17	742765.HMPREF9457_02126	131.0	6.11e-36	COG NOG36366 non supervised orthologous group	N/A
Pfam	UHGV-0085310_17	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-0085310_17	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0085310_19	phrog_581	281.1	0	minor head protein	head and packaging
UniRef90	UHGV-0085310_19	UniRef90_UPI00156DAD02	408.0	0	phage minor capsid protein	N/A
eggNOG-mapper	UHGV-0085310_19	545697.HMPREF0216_02846	190.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-0085310_19	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
Pfam	UHGV-0085310_19	PF15644	N/A	N/A	Papain fold toxin 1, glutamine deamidase	Gln_amidase
COG	UHGV-0085310_19	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0085310_19	PF06152,PF15887,TIGR01641,COG4307	N/A	N/A	N/A	N/A
PHROG	UHGV-0085310_20	phrog_533	211.6	0	portal protein	head and packaging
UniRef90	UHGV-0085310_20	UniRef90_A0A3E3HWH0	587.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0085310_20	645991.Sgly_0336	158.0	2.42e-40	N/A	N/A
Pfam	UHGV-0085310_20	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0085310_20	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0085310_21	K06909	66.9	2.5e-19	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0085310_21	phrog_2	77.7	2.6e-22	terminase large subunit	head and packaging
UniRef90	UHGV-0085310_21	UniRef90_R7N5K9	904.0	0	Terminase_3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0085310_21	1235790.C805_00040	531.0	0	Phage terminase large subunit	N/A
Pfam	UHGV-0085310_21	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
COG	UHGV-0085310_21	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0085310_21	PF03237,PF17289,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
KOfam	UHGV-0085310_22	K07474	102.0	1.2e-29	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-0085310_22	phrog_2606	260.4	0	terminase small subunit	head and packaging
UniRef90	UHGV-0085310_22	UniRef90_UPI0015702ED4	350.0	0	terminase small subunit	N/A
eggNOG-mapper	UHGV-0085310_22	1304866.K413DRAFT_3033	163.0	0	terminase, small subunit	N/A
Pfam	UHGV-0085310_22	PF10668	N/A	N/A	Phage terminase small subunit	Phage_terminase
Pfam	UHGV-0085310_22	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-0085310_22	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0085310_22	PF03592,PF10668,NF040601,COG3728	N/A	N/A	N/A	N/A
KOfam	UHGV-0085310_23	K02171	75.7	8.1e-22	blaI; BlaI family transcriptional regulator, penicillinase repressor	N/A
PHROG	UHGV-0085310_23	phrog_1077	59.5	8.4e-17	transcriptional regulator	transcription regulation
UniRef90	UHGV-0085310_23	UniRef90_A0A3R6A4W8	96.7	3.89e-24	Transcriptional regulator	N/A
eggNOG-mapper	UHGV-0085310_23	585394.RHOM_11965	83.6	1.45e-19	negative regulation of transcription, DNA-templated	N/A
Pfam	UHGV-0085310_23	PF03965	N/A	N/A	Penicillinase repressor	Penicillinase_R
COG	UHGV-0085310_23	COG3682	N/A	N/A	Transcriptional regulator, CopY/TcrY family	N/A
eggNOG-mapper	UHGV-0085310_24	1304866.K413DRAFT_4636	70.5	0.000000000000557	N/A	N/A
structural_annotation	UHGV-0085310_24	PF17457	N/A	N/A	N/A	N/A
PHROG	UHGV-0085310_25	phrog_424	73.1	3.8e-21	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0085310_25	UniRef90_A0A2H4JC51	436.0	0	Putative 3'-phosphoadenosine 5'-phosphosulfatesulfotransferase/FAD synthetase-related enzyme	N/A
eggNOG-mapper	UHGV-0085310_25	693746.OBV_43240	527.0	0	N/A	N/A
COG	UHGV-0085310_25	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-0085310_25	PF01507,MF_00064,TIGR00434,COG0175	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0085310_27	478749.BRYFOR_07594	51.2	0.00000292	N/A	N/A
PHROG	UHGV-0085310_28	phrog_874	173.6	0	N/A	unknown function
eggNOG-mapper	UHGV-0085310_28	411468.CLOSCI_00298	176.0	0	N/A	N/A
structural_annotation	UHGV-0085310_28	PF04266,MF_00684,NF003443,COG4405	N/A	N/A	N/A	N/A
PHROG	UHGV-0085310_30	phrog_20593	91.1	8.7e-27	N/A	unknown function
UniRef90	UHGV-0085310_31	UniRef90_UPI001C02F342	67.4	0.0000000000439	N/A	N/A
eggNOG-mapper	UHGV-0085310_31	397290.C810_01514	56.2	0.0000000419	N/A	N/A
PHROG	UHGV-0085310_32	phrog_15198	43.1	0.0000000000057	N/A	unknown function
UniRef90	UHGV-0085310_32	UniRef90_UPI001F46867E	159.0	0	N/A	N/A
Pfam	UHGV-0085310_32	PF04448	N/A	N/A	N/A	DUF551
PHROG	UHGV-0085310_35	phrog_15768	143.3	8.82818e-44	N/A	unknown function
UniRef90	UHGV-0085310_35	UniRef90_UPI000E525AC6	230.0	0	N/A	N/A
eggNOG-mapper	UHGV-0085310_35	33035.JPJF01000071_gene4467	103.0	3.22e-24	N/A	N/A
AcrCatalog	UHGV-0085310_35	cluster_38323	126.0	1.13e-37	NA	N/A
Pfam	UHGV-0085310_35	PF19808	N/A	N/A	N/A	DUF6291
structural_annotation	UHGV-0085310_35	PF19808	N/A	N/A	N/A	N/A
KOfam	UHGV-0085310_36	K01160	56.2	0.000000000000001	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0085310_36	phrog_1682	71.1	1.7e-20	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0085310_36	UniRef90_A0A1Q6UYH5	292.0	0	Endodeoxyribonuclease RusA	N/A
eggNOG-mapper	UHGV-0085310_36	910314.HMPREF9220_1104	78.6	8.89e-17	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	N/A
Pfam	UHGV-0085310_36	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0085310_36	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0085310_36	PF19595,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-0085310_37	phrog_463	215.3	0	anti-repressor	transcription regulation
UniRef90	UHGV-0085310_37	UniRef90_A0A3R6DHY3	373.0	0	Bro-N domain-containing protein	N/A
eggNOG-mapper	UHGV-0085310_37	411490.ANACAC_00813	223.0	0	BRO family, N-terminal domain	N/A
Pfam	UHGV-0085310_37	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
Pfam	UHGV-0085310_37	PF10552	N/A	N/A	ORF6C domain	ORF6C
COG	UHGV-0085310_37	COG3617	N/A	N/A	Prophage antirepressor	N/A
PHROG	UHGV-0085310_38	phrog_398	214.3	0	N/A	unknown function
UniRef90	UHGV-0085310_38	UniRef90_UPI00068C968F	283.0	0	putative HNHc nuclease	N/A
eggNOG-mapper	UHGV-0085310_38	33035.JPJF01000122_gene2462	283.0	0	Putative HNHc nuclease	N/A
Pfam	UHGV-0085310_38	PF16784	N/A	N/A	Putative HNHc nuclease	HNHc_6
structural_annotation	UHGV-0085310_38	PF16784	N/A	N/A	N/A	N/A
PHROG	UHGV-0085310_39	phrog_14970	212.2	0	N/A	unknown function
eggNOG-mapper	UHGV-0085310_39	1235798.C817_00385	183.0	0	double-strand break repair protein	N/A
Pfam	UHGV-0085310_39	PF04098	N/A	N/A	Rad52/22 family double-strand break repair protein	Rad52_Rad22
COG	UHGV-0085310_39	COG4712	N/A	N/A	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	N/A
structural_annotation	UHGV-0085310_39	PF04098,TIGR00607,COG4712	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0085310_43	PF11127	N/A	N/A	N/A	N/A
PHROG	UHGV-0085310_44	phrog_4621	48.6	0.00000000000013	N/A	unknown function
eggNOG-mapper	UHGV-0085310_44	1415774.U728_1126	54.7	0.00000000842	N/A	N/A
PHROG	UHGV-0085310_46	phrog_8	59.2	1.2e-16	transcriptional regulator	transcription regulation
UniRef90	UHGV-0085310_46	UniRef90_UPI001C015CA8	91.3	8.81e-23	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0085310_46	1304866.K413DRAFT_3003	78.6	1.14e-17	addiction module antidote protein HigA	N/A
Pfam	UHGV-0085310_46	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0085310_46	COG3093	N/A	N/A	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	N/A
KOfam	UHGV-0085310_47	K22300	45.4	0.0000000000017	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0085310_47	phrog_8	64.1	3.6e-18	transcriptional regulator	transcription regulation
UniRef90	UHGV-0085310_47	UniRef90_UPI001C00E09B	209.0	0	helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-0085310_47	476272.RUMHYD_02826	155.0	0	TRANSCRIPTIONal	N/A
Pfam	UHGV-0085310_47	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0085310_47	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0085310_47	PF12844,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0085310_48	phrog_20886	91.1	5e-27	N/A	unknown function
UniRef90	UHGV-0085310_48	UniRef90_UPI000C757FC8	66.6	0.000000000000821	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-0085310_48	476272.RUMHYD_02825	69.3	0.0000000000000637	N/A	N/A
structural_annotation	UHGV-0085310_48	PF06114	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0085310_50	TIGR04165,COG3478	N/A	N/A	N/A	N/A
KOfam	UHGV-0085310_51	K14059	173.0	0	int; integrase	N/A
PHROG	UHGV-0085310_51	phrog_1	161.1	0	integrase	integration and excision
UniRef90	UHGV-0085310_51	UniRef90_D4L3N3	668.0	0	Site-specific recombinase XerD	N/A
eggNOG-mapper	UHGV-0085310_51	397290.C810_05149	579.0	0	Phage integrase, N-terminal SAM-like domain	N/A
Pfam	UHGV-0085310_51	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-0085310_51	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0085310_51	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0085310_51	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A