UHGV-0086877 (vOTU-160348)

Viral Genome: UHGV-0086877

Genome Information

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Overview
UHGV ID	UHGV-0086877
vOTU ID	vOTU-160348
Representative Genome?	Yes
Source	GPD
Original Genome ID	uvig_170313
Associated Biosample	SAMEA3136740
Viral Genome Confidence	Confident

Quality Assessment
CheckV Method	AAI-based
CheckV Completeness	84.2 (Medium-quality)
Trimmed?	Yes
CheckV Viral Markers	17
CheckV Host Markers	4
Recoded?	No

Viral Content
geNomad score	0.9577
Viral Hallmark Genes (geNomad)	13
Plasmid Hallmark Genes (geNomad)	0
ViralVerify Prediction	Virus
ViralVerify Score	50.73
Jumbo Phage?	No

Genome Content
Length (bps)	30,181
GC Content	46.22%
Genetic Code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS Genes	49
CDS Density	94%
Average CDS Length (bps)	581.69
Total tRNA Genes	0
Suppressor tRNA Genes	0

Genome Content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 84.2)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0086877_1	K06400	395.5	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0086877_1	phrog_95	378.5	0	integrase	integration and excision
UniRef90	UHGV-0086877_1	UniRef90_UPI001D05C6CD	855.0	0	recombinase family protein	N/A
eggNOG-mapper	UHGV-0086877_1	706434.HMPREF9429_00560	484.0	0	overlaps another CDS with the same product name	N/A
Pfam	UHGV-0086877_1	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0086877_1	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-0086877_1	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-0086877_1	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0086877_1	PF00239,PF07508,NF041201,COG1961	N/A	N/A	N/A	N/A
UniRef90	UHGV-0086877_2	UniRef90_UPI001CD774ED	78.6	9.87e-18	nuclease	N/A
eggNOG-mapper	UHGV-0086877_2	632335.Calkr_2081	67.0	0.00000000000384	beta-lactamase domain protein	N/A
Pfam	UHGV-0086877_2	PF02805	N/A	N/A	Metal binding domain of Ada	Ada_Zn_binding
COG	UHGV-0086877_2	COG2333	N/A	N/A	DNA uptake channel protein ComEC C-terminal domain, metallo-beta-lactamase superfamily	N/A
structural_annotation	UHGV-0086877_2	PF02805	N/A	N/A	N/A	N/A
PHROG	UHGV-0086877_3	phrog_87	78.3	7e-23	metallo-protease	other
UniRef90	UHGV-0086877_3	UniRef90_UPI001D0906D8	278.0	0	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-0086877_3	1123250.KB908434_gene7	136.0	1.71e-39	Zn peptidase	N/A
Pfam	UHGV-0086877_3	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-0086877_3	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-0086877_3	PF06114,COG2856	N/A	N/A	N/A	N/A
PHROG	UHGV-0086877_4	phrog_8	47.5	0.00000000000036	transcriptional regulator	transcription regulation
UniRef90	UHGV-0086877_4	UniRef90_UPI001D098F34	247.0	0	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0086877_4	387344.LVIS_1597	91.3	9.72e-22	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0086877_4	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0086877_4	COG2932	N/A	N/A	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	N/A
structural_annotation	UHGV-0086877_4	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-0086877_5	UniRef90_UPI001D082226	130.0	3.54e-38	helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-0086877_5	387344.LVIS_1596	92.8	5.54e-24	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0086877_5	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0086877_5	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0086877_5	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-0086877_9	UniRef90_UPI001D016E13	165.0	0	LysM domain-containing protein	N/A
eggNOG-mapper	UHGV-0086877_9	568816.Acin_1401	156.0	0	LysM domain	N/A
Pfam	UHGV-0086877_9	PF01476	N/A	N/A	LysM domain	LysM
COG	UHGV-0086877_9	COG1388	N/A	N/A	LysM repeat	N/A
structural_annotation	UHGV-0086877_9	PF01476,MF_02014,NF010723,COG1388	N/A	N/A	N/A	N/A
PHROG	UHGV-0086877_14	phrog_434	325.4	0	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0086877_14	UniRef90_UPI0004031C7F	542.0	0	YqaJ viral recombinase family protein	N/A
eggNOG-mapper	UHGV-0086877_14	1273103.NM10_01174	426.0	0	YqaJ viral recombinase family protein	N/A
Pfam	UHGV-0086877_14	PF09588	N/A	N/A	YqaJ-like viral recombinase domain	YqaJ
NCBIFam	UHGV-0086877_14	TIGR03033.1	N/A	N/A	putative phage-type endonuclease	N/A
COG	UHGV-0086877_14	COG5377	N/A	N/A	Phage-related protein, predicted endonuclease	N/A
structural_annotation	UHGV-0086877_14	PF09588,MF_03030,TIGR03033,COG5377	N/A	N/A	N/A	N/A
KOfam	UHGV-0086877_16	K07455	288.0	0	recT; recombination protein RecT	N/A
PHROG	UHGV-0086877_16	phrog_148	271.0	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0086877_16	UniRef90_UPI00041DF0FF	546.0	0	recombinase RecT	N/A
eggNOG-mapper	UHGV-0086877_16	568816.Acin_1252	368.0	0	Recombinase, phage RecT family	N/A
Pfam	UHGV-0086877_16	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-0086877_16	TIGR00616.1	N/A	N/A	recombinase, phage RecT family	N/A
COG	UHGV-0086877_16	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
structural_annotation	UHGV-0086877_16	PF03837,NF007351,COG3723	N/A	N/A	N/A	N/A
PHROG	UHGV-0086877_17	phrog_9403	54.9	0.0000000000000018	N/A	unknown function
PHROG	UHGV-0086877_18	phrog_186	90.3	4.3e-27	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0086877_18	UniRef90_UPI0003FCA6D4	431.0	0	DnaD domain protein	N/A
eggNOG-mapper	UHGV-0086877_18	1273103.NM10_01164	105.0	1.03e-25	DnaD domain protein	N/A
Pfam	UHGV-0086877_18	PF13730	N/A	N/A	Helix-turn-helix domain	HTH_36
Pfam	UHGV-0086877_18	PF07261	N/A	N/A	Replication initiation and membrane attachment	DnaB_2
NCBIFam	UHGV-0086877_18	TIGR01446.1	N/A	N/A	DnaD domain protein	N/A
COG	UHGV-0086877_18	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
KOfam	UHGV-0086877_19	K02315	105.5	7e-31	dnaC; DNA replication protein DnaC	N/A
PHROG	UHGV-0086877_19	phrog_50	106.4	3.4e-31	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0086877_19	UniRef90_UPI0006890A5B	548.0	0	DnaA/Hda family protein	N/A
eggNOG-mapper	UHGV-0086877_19	1111454.HMPREF1250_0279	312.0	0	DNA replication protein	N/A
COG	UHGV-0086877_19	COG1484	N/A	N/A	DNA replication protein DnaC	N/A
structural_annotation	UHGV-0086877_19	PF01695,MF_01158,NF005378,COG1484	N/A	N/A	N/A	N/A
PHROG	UHGV-0086877_20	phrog_6568	64.5	1.2e-18	N/A	unknown function
eggNOG-mapper	UHGV-0086877_20	742733.HMPREF9469_05046	52.0	0.0000000529	N/A	N/A
structural_annotation	UHGV-0086877_21	MF_00773	N/A	N/A	N/A	N/A
KOfam	UHGV-0086877_23	K01160	50.7	0.00000000000005	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0086877_23	phrog_140	117.9	7.8e-35	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0086877_23	UniRef90_UPI00047BE4BE	286.0	0	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0086877_23	665956.HMPREF1032_03604	108.0	4.22e-28	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-0086877_23	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0086877_23	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0086877_23	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-0086877_24	phrog_36	56.1	7.9e-16	transcriptional regulator	transcription regulation
UniRef90	UHGV-0086877_24	UniRef90_A0A346B157	116.0	5.49e-30	RNA polymerase subunit sigma-70	N/A
eggNOG-mapper	UHGV-0086877_24	1111454.HMPREF1250_0269	166.0	0	N/A	N/A
structural_annotation	UHGV-0086877_24	PF08281,TIGR01636,COG1191	N/A	N/A	N/A	N/A
KOfam	UHGV-0086877_25	K07451	47.0	0.0000000000005	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	N/A
PHROG	UHGV-0086877_25	phrog_144	78.3	1.1e-22	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0086877_25	UniRef90_UPI00138AE710	183.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0086877_25	435838.HMPREF0786_00878	59.7	0.00000000136	COG1403 Restriction endonuclease	N/A
Pfam	UHGV-0086877_25	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0086877_25	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-0086877_26	phrog_13845	119.1	1.6e-35	N/A	unknown function
eggNOG-mapper	UHGV-0086877_26	1399942.U3PDR2_9CAUD	116.0	6.69e-32	N/A	N/A
structural_annotation	UHGV-0086877_26	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-0086877_27	phrog_9	261.0	0	terminase large subunit	head and packaging
UniRef90	UHGV-0086877_27	UniRef90_UPI000406183D	1187.0	0	terminase large subunit	N/A
eggNOG-mapper	UHGV-0086877_27	1399942.U3PBG5_9CAUD	595.0	0	Phage Terminase	N/A
Pfam	UHGV-0086877_27	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0086877_27	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
structural_annotation	UHGV-0086877_27	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0086877_28	phrog_12	165.0	0	portal protein	head and packaging
UniRef90	UHGV-0086877_28	UniRef90_UPI0003FDC1C6	827.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0086877_28	742738.HMPREF9460_01364	306.0	0	Portal protein	N/A
Pfam	UHGV-0086877_28	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0086877_28	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0086877_28	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0086877_28	PF04860,PF08184,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-0086877_29	K06904	80.1	3.8e-23	N/A	N/A
PHROG	UHGV-0086877_29	phrog_80	109.7	4.3e-32	head maturation protease	head and packaging
UniRef90	UHGV-0086877_29	UniRef90_UPI000415264F	386.0	0	HK97 family phage prohead protease	N/A
eggNOG-mapper	UHGV-0086877_29	1196031.ALEG01000039_gene1815	135.0	3.38e-37	Phage prohead protease, HK97 family	N/A
Pfam	UHGV-0086877_29	PF04586	N/A	N/A	Caudovirus prohead serine protease	Peptidase_S78
COG	UHGV-0086877_29	COG3740	N/A	N/A	Phage head maturation protease	N/A
structural_annotation	UHGV-0086877_29	PF04586,TIGR01543,COG3740	N/A	N/A	N/A	N/A
PHROG	UHGV-0086877_30	phrog_10	225.6	0	major head protein	head and packaging
UniRef90	UHGV-0086877_30	UniRef90_UPI000400CBEC	714.0	0	phage major capsid protein	N/A
eggNOG-mapper	UHGV-0086877_30	903814.ELI_1299	338.0	0	Phage capsid family	N/A
Pfam	UHGV-0086877_30	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0086877_30	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0086877_30	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0086877_30	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0086877_31	PF01281	N/A	N/A	N/A	N/A
PHROG	UHGV-0086877_32	phrog_40	42.7	0.0000000000091	head-tail adaptor Ad1	connector
UniRef90	UHGV-0086877_32	UniRef90_UPI00041E0DD1	203.0	0	head-tail connector protein	N/A
eggNOG-mapper	UHGV-0086877_32	632245.CLP_2916	82.8	2.37e-19	Phage gp6-like head-tail connector protein	N/A
NCBIFam	UHGV-0086877_32	TIGR01560.2	N/A	N/A	head-tail connector protein	N/A
structural_annotation	UHGV-0086877_32	PF05135,TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-0086877_33	phrog_25	61.4	1.6e-17	head closure Hc1	connector
UniRef90	UHGV-0086877_33	UniRef90_UPI000415E870	234.0	0	phage head closure protein	N/A
eggNOG-mapper	UHGV-0086877_33	1285586.H131_21292	89.7	9.93e-22	Phage head-tail joining protein	N/A
Pfam	UHGV-0086877_33	PF05521	N/A	N/A	Phage head-tail joining protein	Phage_H_T_join
NCBIFam	UHGV-0086877_33	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
COG	UHGV-0086877_33	COG5614	N/A	N/A	Phage head-tail adaptor	N/A
structural_annotation	UHGV-0086877_33	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
UniRef90	UHGV-0086877_34	UniRef90_UPI000410849E	300.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0086877_34	1095747.HMPREF1049_2007	105.0	3.62e-27	Bacteriophage HK97-gp10, putative tail-component	N/A
Pfam	UHGV-0086877_34	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-0086877_34	PF17395,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-0086877_35	phrog_525	47.7	0.00000000000017	N/A	unknown function
Pfam	UHGV-0086877_35	PF20765	N/A	N/A	N/A	DUF6838
structural_annotation	UHGV-0086877_35	PF20765,TIGR01633,COG5003	N/A	N/A	N/A	N/A
PHROG	UHGV-0086877_36	phrog_1480	312.8	0	tail sheath	tail
UniRef90	UHGV-0086877_36	UniRef90_A0A7X2XHA8	365.0	0	Phage tail sheath protein	N/A
eggNOG-mapper	UHGV-0086877_36	1095747.HMPREF1049_2005	263.0	0	Phage tail sheath C-terminal domain	N/A
Pfam	UHGV-0086877_36	PF17482	N/A	N/A	Phage tail sheath C-terminal domain	Phage_sheath_1C
structural_annotation	UHGV-0086877_36	PF10758,COG3497	N/A	N/A	N/A	N/A
PHROG	UHGV-0086877_37	phrog_365	118.3	4.9e-35	tail protein	tail
UniRef90	UHGV-0086877_37	UniRef90_UPI000429BBBA	293.0	0	phage tail tube protein	N/A
eggNOG-mapper	UHGV-0086877_37	393480.FNP_1694	128.0	3.89e-36	Phage tail tube protein	N/A
Pfam	UHGV-0086877_37	PF09393	N/A	N/A	Phage tail tube protein	DUF2001
structural_annotation	UHGV-0086877_37	PF09393,TIGR02241,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-0086877_38	phrog_4976	47.0	0.00000000000058	tail assembly chaperone	tail
eggNOG-mapper	UHGV-0086877_38	632245.CLP_2608	57.8	0.0000000069	N/A	N/A
structural_annotation	UHGV-0086877_38	PF08890,TIGR01674	N/A	N/A	N/A	N/A
PHROG	UHGV-0086877_40	phrog_7972	205.6	0	N/A	unknown function
UniRef90	UHGV-0086877_40	UniRef90_A0A8G0NSD2	204.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-0086877_40	469617.FUAG_00846	217.0	0	tape measure	N/A
COG	UHGV-0086877_40	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
PHROG	UHGV-0086877_41	phrog_5184	103.4	1.4e-30	N/A	unknown function
UniRef90	UHGV-0086877_41	UniRef90_A0A5C0SFK8	109.0	2.29e-27	Phage portal protein	N/A
eggNOG-mapper	UHGV-0086877_41	1285586.H131_21257	63.2	0.000000000265	LysM domain	N/A
COG	UHGV-0086877_41	COG1652	N/A	N/A	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	N/A
PHROG	UHGV-0086877_42	phrog_400	184.4	0	tail protein	tail
UniRef90	UHGV-0086877_42	UniRef90_UPI000F0469E9	144.0	2.84e-35	CHAP domain-containing protein	N/A
COG	UHGV-0086877_42	COG4193	N/A	N/A	Beta- N-acetylglucosaminidase	N/A
structural_annotation	UHGV-0086877_42	PF14594,NF033848,COG4379	N/A	N/A	N/A	N/A
PHROG	UHGV-0086877_43	phrog_579	60.5	2.9e-17	N/A	unknown function
UniRef90	UHGV-0086877_43	UniRef90_UPI00047CF220	281.0	0	N/A	N/A
Pfam	UHGV-0086877_43	PF10844	N/A	N/A	N/A	DUF2577
structural_annotation	UHGV-0086877_43	PF10844	N/A	N/A	N/A	N/A
UniRef90	UHGV-0086877_44	UniRef90_UPI0004790B6C	311.0	0	N/A	N/A
Pfam	UHGV-0086877_44	PF10934	N/A	N/A	N/A	DUF2634
structural_annotation	UHGV-0086877_44	PF10934,TIGR03357,COG3628	N/A	N/A	N/A	N/A
PHROG	UHGV-0086877_45	phrog_6	184.9	0	baseplate protein	tail
UniRef90	UHGV-0086877_45	UniRef90_UPI000405AD8A	681.0	0	baseplate J/gp47 family protein	N/A
eggNOG-mapper	UHGV-0086877_45	97138.C820_00599	283.0	0	Baseplate J-like protein	N/A
Pfam	UHGV-0086877_45	PF04865	N/A	N/A	Baseplate J-like protein	Baseplate_J
COG	UHGV-0086877_45	COG3299	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0086877_45	PF04865,PF21379,MF_04102,TIGR02243,COG3299	N/A	N/A	N/A	N/A
PHROG	UHGV-0086877_46	phrog_521	73.3	2.8e-21	tail protein	tail
UniRef90	UHGV-0086877_46	UniRef90_UPI000478E68D	446.0	0	N/A	N/A
eggNOG-mapper	UHGV-0086877_46	632245.CLP_1289	56.6	0.000000355	N/A	N/A
COG	UHGV-0086877_46	COG3778	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0086877_46	PF10076,TIGR02242,COG3778	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0086877_47	1273103.NM10_08099	59.7	0.00000000976	N/A	N/A
KOfam	UHGV-0086877_48	K14059	147.6	1.79366e-43	int; integrase	N/A
PHROG	UHGV-0086877_48	phrog_1	166.1	0	integrase	integration and excision
UniRef90	UHGV-0086877_48	UniRef90_A0A2S0M4J5	563.0	0	Site-specific integrase	N/A
eggNOG-mapper	UHGV-0086877_48	1273103.NM10_01678	416.0	0	Phage integrase family	N/A
Pfam	UHGV-0086877_48	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0086877_48	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0086877_48	PF00589,MF_01808,NF007246,COG4974	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0086877_49	1123250.KB908441_gene1623	57.0	0.0000000243	N/A	N/A