UHGV-0088486 (vOTU-027175)

Viral Genome: UHGV-0088486

Genome Information

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Overview
UHGV ID	UHGV-0088486
vOTU ID	vOTU-027175
Representative Genome?	Yes
Source	GPD
Original Genome ID	uvig_189552
Associated Biosample	N/A
Viral Genome Confidence	Confident

Quality Assessment
CheckV Method	AAI-based
CheckV Completeness	77.84 (Medium-quality)
Trimmed?	No
CheckV Viral Markers	6
CheckV Host Markers	3
Recoded?	No

Viral Content
geNomad score	0.9672
Viral Hallmark Genes (geNomad)	5
Plasmid Hallmark Genes (geNomad)	0
ViralVerify Prediction	Uncertain - plasmid or chromosomal
ViralVerify Score	0.12
Jumbo Phage?	No

Genome Content
Length (bps)	42,908
GC Content	41.11%
Genetic Code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS Genes	59
CDS Density	91%
Average CDS Length (bps)	662.03
Total tRNA Genes	0
Suppressor tRNA Genes	0

Genome Content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 77.84)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-0088486_1	UniRef90_UPI0013FBD8D8	70.1	0.00000000000000256	ABC transporter permease	N/A
eggNOG-mapper	UHGV-0088486_1	1077285.AGDG01000029_gene1315	72.4	0.00000000000000965	Efflux ABC transporter, permease protein	N/A
COG	UHGV-0088486_1	COG0577	N/A	N/A	ABC-type antimicrobial peptide transport system, permease component	N/A
KOfam	UHGV-0088486_2	K02478	233.6	0	K02478; two-component system, LytTR family, sensor kinase [EC:2.7.13.3]	N/A
PHROG	UHGV-0088486_2	phrog_10947	68.1	1.1e-19	N/A	unknown function
UniRef90	UHGV-0088486_2	UniRef90_A0A7X9SCP4	704.0	0	Histidine kinase	N/A
eggNOG-mapper	UHGV-0088486_2	483216.BACEGG_02384	740.0	0	two-component sensor histidine kinase	N/A
Pfam	UHGV-0088486_2	PF06580	N/A	N/A	Histidine kinase	His_kinase
Pfam	UHGV-0088486_2	PF14501	N/A	N/A	GHKL domain	HATPase_c_5
COG	UHGV-0088486_2	COG2972	N/A	N/A	Sensor histidine kinase YesM	N/A
KOfam	UHGV-0088486_3	K02477	216.4	0	K02477; two-component system, LytTR family, response regulator	N/A
PHROG	UHGV-0088486_3	phrog_8810	148.4	4.62428e-44	N/A	unknown function
UniRef90	UHGV-0088486_3	UniRef90_B0NN09	431.0	0	Response regulator receiver domain protein	N/A
eggNOG-mapper	UHGV-0088486_3	483216.BACEGG_02383	460.0	0	COG3279 Response regulator of the LytR AlgR family	N/A
Pfam	UHGV-0088486_3	PF00072	N/A	N/A	Response regulator receiver domain	Response_reg
Pfam	UHGV-0088486_3	PF04397	N/A	N/A	LytTr DNA-binding domain	LytTR
COG	UHGV-0088486_3	COG3279	N/A	N/A	DNA-binding response regulator, LytR/AlgR family	N/A
structural_annotation	UHGV-0088486_3	PF04397,PF00072,MF_00981,NF010684,COG3279	N/A	N/A	N/A	N/A
KOfam	UHGV-0088486_4	K04763	62.6	7.5e-18	xerD; integrase/recombinase XerD	N/A
PHROG	UHGV-0088486_4	phrog_1	89.3	4.5e-26	integrase	integration and excision
UniRef90	UHGV-0088486_4	UniRef90_B0NN10	753.0	0	Site-specific recombinase, phage integrase family	N/A
eggNOG-mapper	UHGV-0088486_4	449673.BACSTE_00840	753.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0088486_4	PF13102	N/A	N/A	Phage integrase SAM-like domain	Phage_int_SAM_5
COG	UHGV-0088486_4	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0088486_4	PF17293,PF13102,PF00589,MF_01808,NF007246,COG4974	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0088486_5	762984.HMPREF9445_00196	123.0	2.06e-36	N/A	N/A
structural_annotation	UHGV-0088486_5	PF19079,TIGR04203	N/A	N/A	N/A	N/A
UniRef90	UHGV-0088486_7	UniRef90_UPI0017819DE1	191.0	0	N/A	N/A
eggNOG-mapper	UHGV-0088486_7	449673.BACSTE_00843	249.0	0	N/A	N/A
Pfam	UHGV-0088486_7	PF16476	N/A	N/A	N/A	DUF5053
structural_annotation	UHGV-0088486_7	PF16476	N/A	N/A	N/A	N/A
UniRef90	UHGV-0088486_8	UniRef90_UPI001A9E3667	2332.0	0	BACON domain-containing protein	N/A
eggNOG-mapper	UHGV-0088486_8	1077285.AGDG01000016_gene515	336.0	0	Putative binding domain, N-terminal	N/A
Pfam	UHGV-0088486_8	PF13004	N/A	N/A	Putative binding domain, N-terminal	BACON
COG	UHGV-0088486_8	COG5492	N/A	N/A	N/A	N/A
PHROG	UHGV-0088486_10	phrog_2302	92.8	3.4e-27	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0088486_10	UniRef90_A0A7U9SKN7	102.0	1.64e-26	tRNA(Ile)-lysidine synthase	N/A
eggNOG-mapper	UHGV-0088486_10	226186.BT_1070	167.0	0	Phosphoadenosine phosphosulfate reductase family	N/A
Pfam	UHGV-0088486_10	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-0088486_10	COG3969	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0088486_11	357276.EL88_22660	271.0	0	N/A	N/A
PHROG	UHGV-0088486_12	phrog_315	130.5	1.4e-38	endolysin	lysis
UniRef90	UHGV-0088486_12	UniRef90_A0A139K2L2	344.0	0	Peptidoglycan domain protein	N/A
eggNOG-mapper	UHGV-0088486_12	1122971.BAME01000006_gene883	275.0	0	Predicted Peptidoglycan domain	N/A
Pfam	UHGV-0088486_12	PF05838	N/A	N/A	Glycosyl hydrolase 108	Glyco_hydro_108
Pfam	UHGV-0088486_12	PF09374	N/A	N/A	Predicted Peptidoglycan domain	PG_binding_3
COG	UHGV-0088486_12	COG3926	N/A	N/A	Lysozyme family protein	N/A
structural_annotation	UHGV-0088486_12	PF05838,NF040573,COG3926	N/A	N/A	N/A	N/A
PHROG	UHGV-0088486_13	phrog_32423	42.4	0.000000000011	N/A	unknown function
eggNOG-mapper	UHGV-0088486_13	411479.BACUNI_00731	213.0	0	N/A	N/A
KOfam	UHGV-0088486_14	K14060	149.1	3.92364e-44	pinR; putative DNA-invertase from lambdoid prophage Rac	N/A
PHROG	UHGV-0088486_14	phrog_125	131.0	1e-38	DNA invertase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0088486_14	UniRef90_R7EDD4	369.0	0	Resolvase protein	N/A
eggNOG-mapper	UHGV-0088486_14	1236514.BAKL01000134_gene5617	326.0	0	COG COG1961 Site-specific recombinases, DNA invertase Pin homologs	N/A
Pfam	UHGV-0088486_14	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
NCBIFam	UHGV-0088486_14	NF009949.0	N/A	N/A	master DNA invertase Mpi family serine-type recombinase	N/A
COG	UHGV-0088486_14	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0088486_14	PF00239,MF_00489,NF009949,COG1961	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0088486_19	1121097.JCM15093_3259	130.0	1.69e-32	N/A	N/A
UniRef90	UHGV-0088486_20	UniRef90_A0A7D7PPW7	280.0	0	Putative outer capsid protein	N/A
eggNOG-mapper	UHGV-0088486_20	357276.EL88_22720	508.0	0	N/A	N/A
structural_annotation	UHGV-0088486_20	PF02010,MF_04116,NF032891,COG1361	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0088486_21	357276.EL88_22725	118.0	2.08e-33	N/A	N/A
PHROG	UHGV-0088486_22	phrog_3267	45.4	0.00000000000046	tail protein	tail
eggNOG-mapper	UHGV-0088486_22	357276.EL88_22730	480.0	0	N/A	N/A
structural_annotation	UHGV-0088486_22	PF02010,MF_04116,NF041431,COG1361	N/A	N/A	N/A	N/A
PHROG	UHGV-0088486_24	phrog_26822	186.7	0	N/A	unknown function
eggNOG-mapper	UHGV-0088486_24	1236514.BAKL01000067_gene4348	610.0	0	Phage minor structural protein	N/A
COG	UHGV-0088486_24	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0088486_24	PF20942,PF00970,COG2375	N/A	N/A	N/A	N/A
PHROG	UHGV-0088486_25	phrog_24616	159.7	0	N/A	unknown function
UniRef90	UHGV-0088486_25	UniRef90_F3PDX6	295.0	0	Conserved domain protein	N/A
eggNOG-mapper	UHGV-0088486_25	762984.HMPREF9445_00184	295.0	0	N/A	N/A
structural_annotation	UHGV-0088486_25	PF20459	N/A	N/A	N/A	N/A
PHROG	UHGV-0088486_26	phrog_11226	417.6	0	portal protein	head and packaging
eggNOG-mapper	UHGV-0088486_26	762984.HMPREF9445_00183	752.0	0	N/A	N/A
structural_annotation	UHGV-0088486_26	PF04860,MF_04135,TIGR01540,COG5518	N/A	N/A	N/A	N/A
PHROG	UHGV-0088486_27	phrog_37138	61.7	1e-17	N/A	unknown function
UniRef90	UHGV-0088486_27	UniRef90_F3PDX4	257.0	0	Conserved domain protein	N/A
eggNOG-mapper	UHGV-0088486_27	762984.HMPREF9445_00182	257.0	0	N/A	N/A
PHROG	UHGV-0088486_28	phrog_21217	187.0	0	N/A	unknown function
eggNOG-mapper	UHGV-0088486_28	762984.HMPREF9445_00181	360.0	0	N/A	N/A
PHROG	UHGV-0088486_29	phrog_38780	298.2	0	N/A	unknown function
UniRef90	UHGV-0088486_29	UniRef90_F3PDX2	710.0	0	Conserved domain protein	N/A
eggNOG-mapper	UHGV-0088486_29	762984.HMPREF9445_00180	710.0	0	N/A	N/A
structural_annotation	UHGV-0088486_29	PF05065,MF_04119,NF033394,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-0088486_30	K01358	102.1	7.6e-30	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0088486_30	phrog_33547	144.0	8.29569e-43	N/A	unknown function
UniRef90	UHGV-0088486_30	UniRef90_A0A3E5EXQ8	722.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-0088486_30	762984.HMPREF9445_00179	634.0	0	Clp protease	N/A
Pfam	UHGV-0088486_30	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0088486_30	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0088486_30	PF00574,MF_00444,NF011090,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0088486_31	phrog_17790	74.5	1.1e-21	N/A	unknown function
UniRef90	UHGV-0088486_31	UniRef90_A0A3N2MW96	65.9	0.00000000000208	Mor domain-containing protein	N/A
eggNOG-mapper	UHGV-0088486_31	762984.HMPREF9445_00174	129.0	2.63e-38	N/A	N/A
PHROG	UHGV-0088486_32	phrog_37298	197.1	0	N/A	unknown function
UniRef90	UHGV-0088486_32	UniRef90_A0A0P0M3D9	729.0	0	Erythrocyte binding protein 1	N/A
eggNOG-mapper	UHGV-0088486_32	357276.EL88_08385	735.0	0	domain protein	N/A
COG	UHGV-0088486_32	COG1511	N/A	N/A	N/A	N/A
PHROG	UHGV-0088486_33	phrog_33698	78.4	2.5e-36	N/A	unknown function
eggNOG-mapper	UHGV-0088486_33	357276.EL88_08390	584.0	0	N/A	N/A
structural_annotation	UHGV-0088486_33	NF033848,COG4379	N/A	N/A	N/A	N/A
PHROG	UHGV-0088486_34	phrog_37065	148.1	6.5861e-44	N/A	unknown function
eggNOG-mapper	UHGV-0088486_34	1236514.BAKL01000015_gene1631	539.0	0	N/A	N/A
structural_annotation	UHGV-0088486_34	PF12245,PF06199,TIGR02126,TIGR04488,COG4718	N/A	N/A	N/A	N/A
PHROG	UHGV-0088486_35	phrog_31246	62.7	1.8e-27	N/A	unknown function
UniRef90	UHGV-0088486_35	UniRef90_F3PDW2	235.0	0	Conserved domain protein	N/A
eggNOG-mapper	UHGV-0088486_35	762984.HMPREF9445_00170	235.0	0	N/A	N/A
PHROG	UHGV-0088486_36	phrog_33245	125.2	2.9e-37	N/A	unknown function
UniRef90	UHGV-0088486_36	UniRef90_F3PDW1	272.0	0	Conserved domain protein	N/A
eggNOG-mapper	UHGV-0088486_36	762984.HMPREF9445_00169	272.0	0	N/A	N/A
structural_annotation	UHGV-0088486_36	PF05657,COG5003	N/A	N/A	N/A	N/A
PHROG	UHGV-0088486_37	phrog_28240	112.8	3.6e-33	N/A	unknown function
UniRef90	UHGV-0088486_37	UniRef90_F3PDW0	297.0	0	Conserved domain protein	N/A
eggNOG-mapper	UHGV-0088486_37	762984.HMPREF9445_00168	297.0	0	N/A	N/A
KOfam	UHGV-0088486_38	K06909	92.6	5.7e-27	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0088486_38	phrog_2	82.6	8.2e-24	terminase large subunit	head and packaging
UniRef90	UHGV-0088486_38	UniRef90_A0A3E5EX96	912.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0088486_38	762984.HMPREF9445_00167	802.0	0	Terminase-like family	N/A
Pfam	UHGV-0088486_38	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
COG	UHGV-0088486_38	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0088486_38	PF04466,PF17289,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0088486_39	phrog_606	134.3	2.5e-40	terminase small subunit	head and packaging
UniRef90	UHGV-0088486_39	UniRef90_F3PDV8	340.0	0	Conserved domain protein	N/A
eggNOG-mapper	UHGV-0088486_39	762984.HMPREF9445_00166	340.0	0	DNA-packaging protein gp3	N/A
Pfam	UHGV-0088486_39	PF16677	N/A	N/A	DNA-packaging protein gp3	GP3_package
structural_annotation	UHGV-0088486_39	PF16677	N/A	N/A	N/A	N/A
PHROG	UHGV-0088486_40	phrog_842	219.5	0	beta-glucosyl-HMC-alpha-glucosyltransferase	other
UniRef90	UHGV-0088486_40	UniRef90_A0A822UCQ7	319.0	0	ParB-like nuclease	N/A
eggNOG-mapper	UHGV-0088486_40	508419.F8J156_9CAUD	194.0	0	N/A	N/A
Pfam	UHGV-0088486_40	PF20691	N/A	N/A	TET-Associated Glycosyltransferase	TAGT
structural_annotation	UHGV-0088486_40	PF20691,NF041865,COG1216	N/A	N/A	N/A	N/A
PHROG	UHGV-0088486_41	phrog_620	87.0	1.9e-25	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0088486_41	UniRef90_A0A374QEJ4	480.0	0	ParB domain-containing protein	N/A
eggNOG-mapper	UHGV-0088486_41	357276.EL88_08430	180.0	0	ParB-like nuclease domain	N/A
Pfam	UHGV-0088486_41	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
COG	UHGV-0088486_41	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-0088486_41	PF02195,TIGR00180,COG5119	N/A	N/A	N/A	N/A
UniRef90	UHGV-0088486_42	UniRef90_A0A016I425	67.4	0.0000000000000356	Putative membrane protein	N/A
KOfam	UHGV-0088486_43	K23398	55.5	0.000000000000001	TRIP4; activating signal cointegrator 1	N/A
PHROG	UHGV-0088486_43	phrog_3193	94.7	7.9e-28	N/A	unknown function
UniRef90	UHGV-0088486_43	UniRef90_A0A374Q041	364.0	0	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-0088486_43	657309.BXY_08470	199.0	0	ASCH domain	N/A
Pfam	UHGV-0088486_43	PF04266	N/A	N/A	ASCH domain	ASCH
structural_annotation	UHGV-0088486_43	COG4933	N/A	N/A	N/A	N/A
PHROG	UHGV-0088486_45	phrog_9236	224.9	0	pyrophosphatase	other
eggNOG-mapper	UHGV-0088486_45	1122971.BAME01000163_gene6622	220.0	0	N/A	N/A
structural_annotation	UHGV-0088486_45	PF08761,COG4508	N/A	N/A	N/A	N/A
PHROG	UHGV-0088486_47	phrog_874	93.3	2.4e-27	N/A	unknown function
eggNOG-mapper	UHGV-0088486_47	1121098.HMPREF1534_01095	228.0	0	N/A	N/A
structural_annotation	UHGV-0088486_47	PF04266,MF_00684,NF003443,COG4405	N/A	N/A	N/A	N/A
PHROG	UHGV-0088486_49	phrog_12005	76.1	3.4e-22	N/A	unknown function
eggNOG-mapper	UHGV-0088486_51	411901.BACCAC_01173	185.0	0	N/A	N/A
KOfam	UHGV-0088486_58	K23398	54.8	0.0000000000000014	TRIP4; activating signal cointegrator 1	N/A
PHROG	UHGV-0088486_58	phrog_3193	93.9	1.3e-27	N/A	unknown function
UniRef90	UHGV-0088486_58	UniRef90_A0A374Q041	357.0	0	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-0088486_58	657309.BXY_08470	202.0	0	ASCH domain	N/A
Pfam	UHGV-0088486_58	PF04266	N/A	N/A	ASCH domain	ASCH
structural_annotation	UHGV-0088486_58	COG4933	N/A	N/A	N/A	N/A
UniRef90	UHGV-0088486_59	UniRef90_UPI0018A95842	116.0	2.67e-31	N/A	N/A