UHGV-0090374 (vOTU-096898)

Viral Genome: UHGV-0090374

Genome Information

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Overview
UHGV ID	UHGV-0090374
vOTU ID	vOTU-096898
Representative Genome?	Yes
Source	GPD
Original Genome ID	uvig_184566
Associated Biosample	SAMEA3449279
Viral Genome Confidence	Confident

Quality Assessment
CheckV Method	AAI-based
CheckV Completeness	51.89 (Medium-quality)
Trimmed?	Yes
CheckV Viral Markers	10
CheckV Host Markers	6
Recoded?	No

Viral Content
geNomad score	0.9573
Viral Hallmark Genes (geNomad)	4
Plasmid Hallmark Genes (geNomad)	0
ViralVerify Prediction	Virus
ViralVerify Score	16.84
Jumbo Phage?	No

Genome Content
Length (bps)	28,369
GC Content	55.99%
Genetic Code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS Genes	42
CDS Density	89%
Average CDS Length (bps)	603.29
Total tRNA Genes	0
Suppressor tRNA Genes	0

Genome Content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 51.89)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0090374_1	K14059	243.9	0	int; integrase	N/A
PHROG	UHGV-0090374_1	phrog_1	195.3	0	integrase	integration and excision
UniRef90	UHGV-0090374_1	UniRef90_UPI001F3329EB	803.0	0	site-specific integrase	N/A
eggNOG-mapper	UHGV-0090374_1	397290.C810_00627	497.0	0	Phage integrase, N-terminal SAM-like domain	N/A
Pfam	UHGV-0090374_1	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-0090374_1	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0090374_1	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0090374_1	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
UniRef90	UHGV-0090374_2	UniRef90_UPI001F428D96	668.0	0	virulence RhuM family protein	N/A
eggNOG-mapper	UHGV-0090374_2	1035196.HMPREF9998_00638	569.0	0	Virulence protein RhuM family	N/A
Pfam	UHGV-0090374_2	PF13310	N/A	N/A	Virulence protein RhuM family	Virulence_RhuM
COG	UHGV-0090374_2	COG3943	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0090374_2	PF13310,TIGR02681,COG3943	N/A	N/A	N/A	N/A
PHROG	UHGV-0090374_7	phrog_5968	77.4	1.6e-22	replisome organizer	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0090374_7	UniRef90_R6LWZ9	182.0	0	DnaD and phage-associated domain	N/A
eggNOG-mapper	UHGV-0090374_7	718252.FP2_01000	172.0	0	N/A	N/A
COG	UHGV-0090374_7	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0090374_8	PF10762,NF007968	N/A	N/A	N/A	N/A
PHROG	UHGV-0090374_9	phrog_6251	103.6	2.7e-30	replisome organizer DnaA-like	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0090374_9	UniRef90_A0A353JBC1	102.0	4.66e-24	DnaB_2 domain-containing protein (Fragment)	N/A
eggNOG-mapper	UHGV-0090374_9	562743.JH976434_gene1041	94.4	7.23e-21	dnaD_dom DnaD domain protein	N/A
COG	UHGV-0090374_9	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
KOfam	UHGV-0090374_10	K03091	59.0	1.1e-16	sigH; RNA polymerase sporulation-specific sigma factor	N/A
UniRef90	UHGV-0090374_10	UniRef90_UPI001C1067EF	115.0	1.18e-27	sigma-70 family RNA polymerase sigma factor	N/A
eggNOG-mapper	UHGV-0090374_10	1121344.JHZO01000004_gene1172	121.0	1.77e-30	Sigma-70, region 4	N/A
Pfam	UHGV-0090374_10	PF08281	N/A	N/A	Sigma-70, region 4	Sigma70_r4_2
NCBIFam	UHGV-0090374_10	TIGR02937.1	N/A	N/A	sigma-70 family RNA polymerase sigma factor	N/A
COG	UHGV-0090374_10	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-0090374_10	PF04545,PF04542,MF_00961,TIGR02393,COG1191	N/A	N/A	N/A	N/A
PHROG	UHGV-0090374_13	phrog_3140	68.9	9.6e-20	tail assembly chaperone	tail
UniRef90	UHGV-0090374_13	UniRef90_A0A847W9F1	107.0	1.63e-27	Phage tail assembly protein	N/A
eggNOG-mapper	UHGV-0090374_13	1408437.JNJN01000030_gene1056	114.0	3.5e-31	N/A	N/A
Pfam	UHGV-0090374_13	PF10109	N/A	N/A	Phage tail assembly chaperone proteins, E, or 41 or 14	Phage_TAC_7
KOfam	UHGV-0090374_14	K10421	42.3	4.5e-23	CLIP1, RSN; CAP-Gly domain-containing linker protein 1	N/A
PHROG	UHGV-0090374_14	phrog_13339	373.1	0	tail length tape measure protein	tail
UniRef90	UHGV-0090374_14	UniRef90_A0A3D4MZY3	1662.0	0	Phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-0090374_14	1408437.JNJN01000030_gene1055	880.0	0	Phage-related minor tail protein	N/A
Pfam	UHGV-0090374_14	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-0090374_14	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-0090374_14	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-0090374_14	PF10145,TIGR01760,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-0090374_15	phrog_46	54.6	0.0000000000000016	tail protein	tail
UniRef90	UHGV-0090374_15	UniRef90_A0A3D4MY79	135.0	2.44e-40	Phage tail protein	N/A
eggNOG-mapper	UHGV-0090374_15	445972.ANACOL_00192	99.8	6.21e-27	Phage Tail Protein X	N/A
Pfam	UHGV-0090374_15	PF05489	N/A	N/A	Phage Tail Protein X	Phage_tail_X
COG	UHGV-0090374_15	COG5004	N/A	N/A	P2-like prophage tail protein X	N/A
structural_annotation	UHGV-0090374_15	PF05489,TIGR02899,COG5004	N/A	N/A	N/A	N/A
KOfam	UHGV-0090374_16	K06905	230.9	0	N/A	N/A
PHROG	UHGV-0090374_16	phrog_52	307.8	0	tail protein	tail
UniRef90	UHGV-0090374_16	UniRef90_A0A3D4MX64	783.0	0	SH3b domain-containing protein	N/A
eggNOG-mapper	UHGV-0090374_16	445972.ANACOL_00193	464.0	0	Late control gene D protein	N/A
Pfam	UHGV-0090374_16	PF08239	N/A	N/A	Bacterial SH3 domain	SH3_3
COG	UHGV-0090374_16	COG3500	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0090374_16	PF05954,NF033848,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-0090374_17	phrog_6142	91.5	4.9e-27	baseplate assembly protein	tail
UniRef90	UHGV-0090374_17	UniRef90_A0A1C6D458	223.0	0	Phage P2 baseplate assembly protein gpV	N/A
eggNOG-mapper	UHGV-0090374_17	445972.ANACOL_00194	88.2	3.9e-21	N/A	N/A
structural_annotation	UHGV-0090374_17	PF05606,MF_00216,TIGR00008,COG0361	N/A	N/A	N/A	N/A
PHROG	UHGV-0090374_18	phrog_76	71.0	1.8e-20	tail protein	tail
UniRef90	UHGV-0090374_18	UniRef90_UPI00137A544F	201.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-0090374_18	1235835.C814_03450	166.0	0	Phage P2 GpU	N/A
Pfam	UHGV-0090374_18	PF06995	N/A	N/A	Phage P2 GpU	Phage_P2_GpU
COG	UHGV-0090374_18	COG3499	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0090374_18	PF06995,TIGR01633,COG3499	N/A	N/A	N/A	N/A
KOfam	UHGV-0090374_19	K06903	53.0	0.000000000000008	N/A	N/A
PHROG	UHGV-0090374_19	phrog_43	61.2	1.4e-17	baseplate wedge subunit	tail
UniRef90	UHGV-0090374_19	UniRef90_A0A1C6D4D6	192.0	0	Type VI secretion system lysozyme-like protein	N/A
eggNOG-mapper	UHGV-0090374_19	1235835.C814_03449	112.0	1.14e-30	GPW Gp25 family protein	N/A
Pfam	UHGV-0090374_19	PF04965	N/A	N/A	Baseplate wedge protein gp25	GPW_gp25
COG	UHGV-0090374_19	COG3628	N/A	N/A	Phage baseplate assembly protein W	N/A
structural_annotation	UHGV-0090374_19	PF04965,TIGR03357,COG3628	N/A	N/A	N/A	N/A
PHROG	UHGV-0090374_20	phrog_6	209.0	0	baseplate protein	tail
UniRef90	UHGV-0090374_20	UniRef90_A0A3D4MX85	702.0	0	Phage baseplate protein	N/A
eggNOG-mapper	UHGV-0090374_20	1408437.JNJN01000030_gene1053	506.0	0	Baseplate J-like protein	N/A
Pfam	UHGV-0090374_20	PF04865	N/A	N/A	Baseplate J-like protein	Baseplate_J
COG	UHGV-0090374_20	COG3948	N/A	N/A	Phage-related baseplate assembly protein	N/A
structural_annotation	UHGV-0090374_20	PF04865,PF21379,MF_04102,TIGR02243,COG3948	N/A	N/A	N/A	N/A
PHROG	UHGV-0090374_21	phrog_14404	139.0	3.80004e-41	baseplate protein	tail
UniRef90	UHGV-0090374_21	UniRef90_A0A415ZKT7	326.0	0	Phage tail protein I	N/A
eggNOG-mapper	UHGV-0090374_21	1408437.JNJN01000030_gene1052	245.0	0	Phage tail protein (Tail_P2_I)	N/A
Pfam	UHGV-0090374_21	PF09684	N/A	N/A	Phage tail protein (Tail_P2_I)	Tail_P2_I
NCBIFam	UHGV-0090374_21	TIGR01634.1	N/A	N/A	phage tail protein I	N/A
COG	UHGV-0090374_21	COG4385	N/A	N/A	Bacteriophage P2-related tail formation protein	N/A
structural_annotation	UHGV-0090374_21	PF09684,TIGR01634,COG4385	N/A	N/A	N/A	N/A
PHROG	UHGV-0090374_22	phrog_5302	287.3	0	tail protein	tail
UniRef90	UHGV-0090374_22	UniRef90_UPI001CBAF2B2	341.0	0	carboxypeptidase-like regulatory domain-containing protein	N/A
eggNOG-mapper	UHGV-0090374_22	1203606.HMPREF1526_00261	206.0	0	cellulose 1,4-beta-cellobiosidase activity	N/A
COG	UHGV-0090374_22	COG5301	N/A	N/A	Phage-related tail fiber protein	N/A
structural_annotation	UHGV-0090374_22	PF12571,PF07210,PF14686,NF040788,COG5301,COG2512	N/A	N/A	N/A	N/A
KOfam	UHGV-0090374_24	K00986	113.3	2.7e-33	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	N/A
PHROG	UHGV-0090374_24	phrog_1423	231.1	0	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0090374_24	UniRef90_A0A3D4MX65	675.0	0	Reverse transcriptase domain-containing protein	N/A
eggNOG-mapper	UHGV-0090374_24	755164.D6PSR5_9CAUD	238.0	0	RNA-directed DNA polymerase activity	N/A
PADLOC	UHGV-0090374_24	icity0040	70.3	4.9e-20	RT (reverse transcriptase)	CRISPR-CAS
Pfam	UHGV-0090374_24	PF00078	N/A	N/A	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
structural_annotation	UHGV-0090374_24	PF00078,MF_01390,TIGR04416,COG3344	N/A	N/A	N/A	N/A
UniRef90	UHGV-0090374_26	UniRef90_R6I1X1	137.0	2.43e-39	COPII coat assembly protein SEC16 (Protein transport protein SEC16)	N/A
eggNOG-mapper	UHGV-0090374_26	1232449.BAHV02000010_gene2734	76.3	0.00000000000000135	N/A	N/A
PHROG	UHGV-0090374_27	phrog_4105	44.2	0.0000000000016	N/A	unknown function
KOfam	UHGV-0090374_29	K01447	50.3	0.000000000000046	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0090374_29	phrog_20388	285.4	0	endolysin	lysis
UniRef90	UHGV-0090374_29	UniRef90_A0A1C6D6B1	533.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-0090374_29	1203606.HMPREF1526_00582	324.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-0090374_29	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
COG	UHGV-0090374_29	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0090374_29	PF01510,MF_04111,NF008758,COG3023	N/A	N/A	N/A	N/A
PHROG	UHGV-0090374_31	phrog_14085	96.0	1.4e-28	N/A	unknown function
eggNOG-mapper	UHGV-0090374_31	1123075.AUDP01000023_gene2865	102.0	2.76e-27	N/A	N/A
eggNOG-mapper	UHGV-0090374_33	742740.HMPREF9474_02999	52.8	0.00000308	N/A	N/A
structural_annotation	UHGV-0090374_33	PF06243,MF_00273,TIGR04031,COG2157	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0090374_34	PF21611,NF038178	N/A	N/A	N/A	N/A
PHROG	UHGV-0090374_36	phrog_4068	82.8	4.3e-24	N/A	unknown function
structural_annotation	UHGV-0090374_36	PF06657	N/A	N/A	N/A	N/A
PHROG	UHGV-0090374_37	phrog_3939	72.1	7.9e-21	N/A	unknown function
eggNOG-mapper	UHGV-0090374_37	445972.ANACOL_00207	117.0	7.76e-34	N/A	N/A
eggNOG-mapper	UHGV-0090374_38	665956.HMPREF1032_02270	61.6	0.000000000559	N/A	N/A
UniRef90	UHGV-0090374_40	UniRef90_A0A417F839	135.0	1.84e-40	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0090374_40	1378168.N510_02489	108.0	1.49e-30	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-0090374_40	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-0090374_40	PF13560,TIGR02612,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0090374_41	K07727	62.0	1.6e-17	K07727; putative transcriptional regulator	N/A
UniRef90	UHGV-0090374_41	UniRef90_A0A3D4MXF6	166.0	0	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0090374_41	445972.ANACOL_00212	118.0	7.77e-34	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-0090374_41	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
COG	UHGV-0090374_41	COG3655	N/A	N/A	DNA-binding transcriptional regulator, XRE family	N/A
structural_annotation	UHGV-0090374_41	PF13443,NF000090,COG3655	N/A	N/A	N/A	N/A