UHGV-0112423 (vOTU-014737)

Viral Genome: UHGV-0112423

Genome Information

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Overview
UHGV ID	UHGV-0112423
vOTU ID	vOTU-014737
Representative Genome?	Yes
Source	GPD
Original Genome ID	uvig_246302
Associated Biosample	N/A
Viral Genome Confidence	Confident

Quality Assessment
CheckV Method	AAI-based
CheckV Completeness	91.26 (High-quality)
Trimmed?	No
CheckV Viral Markers	13
CheckV Host Markers	0
Recoded?	No

Viral Content
geNomad score	0.9809
Viral Hallmark Genes (geNomad)	4
Plasmid Hallmark Genes (geNomad)	0
ViralVerify Prediction	Virus
ViralVerify Score	28.76
Jumbo Phage?	No

Genome Content
Length (bps)	39,306
GC Content	60.22%
Genetic Code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS Genes	50
CDS Density	94%
Average CDS Length (bps)	738.60
Total tRNA Genes	0
Suppressor tRNA Genes	0

Genome Content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 91.26)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0112423_1	K14059	135.6	7e-40	int; integrase	N/A
PHROG	UHGV-0112423_1	phrog_1	158.9	0	integrase	integration and excision
UniRef90	UHGV-0112423_1	UniRef90_A0A3D4D8C4	718.0	0	Integrase	N/A
eggNOG-mapper	UHGV-0112423_1	742738.HMPREF9460_00840	399.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0112423_1	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0112423_1	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0112423_1	PF00589,MF_01808,NF007246,COG4974	N/A	N/A	N/A	N/A
KOfam	UHGV-0112423_2	K22300	62.7	8.9e-18	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0112423_2	phrog_8	66.1	8e-19	transcriptional regulator	transcription regulation
UniRef90	UHGV-0112423_2	UniRef90_A0A3D4D7M3	126.0	1.58e-35	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0112423_2	1194526.A284_08095	95.5	5.36e-23	Peptidase S24-like	N/A
Pfam	UHGV-0112423_2	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0112423_2	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-0112423_2	PF13560,MF_00535,NF007257,COG3655	N/A	N/A	N/A	N/A
UniRef90	UHGV-0112423_3	UniRef90_A0A352SIQ1	73.6	8.07e-16	HTH cro/C1-type domain-containing protein	N/A
Pfam	UHGV-0112423_3	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
UniRef90	UHGV-0112423_4	UniRef90_UPI00051C0A6D	115.0	2.22e-32	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0112423_4	246199.CUS_5910	76.3	1.59e-17	N/A	N/A
Pfam	UHGV-0112423_4	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0112423_4	PF21291,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0112423_6	phrog_6058	40.1	0.000000000043	N/A	unknown function
eggNOG-mapper	UHGV-0112423_6	742738.HMPREF9460_00848	117.0	9.68e-33	N/A	N/A
structural_annotation	UHGV-0112423_6	PF12728,TIGR01764	N/A	N/A	N/A	N/A
PHROG	UHGV-0112423_9	phrog_36399	85.8	4.9e-25	N/A	unknown function
eggNOG-mapper	UHGV-0112423_9	1226322.HMPREF1545_00099	78.2	3.66e-17	N/A	N/A
PHROG	UHGV-0112423_10	phrog_8470	355.8	0	N/A	unknown function
UniRef90	UHGV-0112423_10	UniRef90_UPI0019580896	728.0	0	PcfJ domain-containing protein	N/A
eggNOG-mapper	UHGV-0112423_10	1226322.HMPREF1545_00100	674.0	0	PcfJ-like protein	N/A
Pfam	UHGV-0112423_10	PF14284	N/A	N/A	PcfJ-like protein	PcfJ
structural_annotation	UHGV-0112423_10	PF14284	N/A	N/A	N/A	N/A
PHROG	UHGV-0112423_11	phrog_15609	205.8	0	N/A	unknown function
UniRef90	UHGV-0112423_11	UniRef90_UPI001C102D5E	225.0	0	N/A	N/A
eggNOG-mapper	UHGV-0112423_11	693746.OBV_24000	174.0	0	N/A	N/A
Pfam	UHGV-0112423_11	PF11300	N/A	N/A	N/A	DUF3102
COG	UHGV-0112423_11	COG2433	N/A	N/A	Possible nuclease of RNase H fold, RuvC/YqgF family	N/A
structural_annotation	UHGV-0112423_11	PF11300,PF15591,PF07321,NF038070,NF008636,COG4568	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0112423_12	PF08207	N/A	N/A	N/A	N/A
PHROG	UHGV-0112423_13	phrog_3136	128.3	1.3e-38	N/A	unknown function
UniRef90	UHGV-0112423_13	UniRef90_A0A6N7TMC2	125.0	2.85e-33	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-0112423_13	1007096.BAGW01000031_gene120	66.2	0.0000000001	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	N/A
COG	UHGV-0112423_13	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
structural_annotation	UHGV-0112423_13	PF04266,MF_00684,NF008917,COG4933	N/A	N/A	N/A	N/A
PHROG	UHGV-0112423_14	phrog_799	143.1	2.29953e-42	DNA methyltransferase	other
UniRef90	UHGV-0112423_14	UniRef90_UPI000AAF359D	405.0	0	SAM-dependent DNA methyltransferase	N/A
eggNOG-mapper	UHGV-0112423_14	1519439.JPJG01000060_gene1874	405.0	0	site-specific DNA-methyltransferase (adenine-specific) activity	N/A
COG	UHGV-0112423_14	COG0286	N/A	N/A	Type I restriction-modification system, DNA methylase subunit	N/A
structural_annotation	UHGV-0112423_14	PF05869,MF_01872,NF000058,COG4123	N/A	N/A	N/A	N/A
PHROG	UHGV-0112423_15	phrog_27610	45.3	0.00000000000059	N/A	unknown function
structural_annotation	UHGV-0112423_17	PF08271	N/A	N/A	N/A	N/A
PHROG	UHGV-0112423_20	phrog_38832	72.6	4.1e-21	N/A	unknown function
eggNOG-mapper	UHGV-0112423_20	665956.HMPREF1032_00143	76.6	0.00000000000000432	N/A	N/A
eggNOG-mapper	UHGV-0112423_22	665956.HMPREF1032_03087	51.6	0.00000475	N/A	N/A
PHROG	UHGV-0112423_25	phrog_872	141.4	1.09301e-43	N/A	unknown function
UniRef90	UHGV-0112423_25	UniRef90_A0A8J6M9F5	210.0	0	N/A	N/A
eggNOG-mapper	UHGV-0112423_25	1519439.JPJG01000060_gene1880	166.0	0	N/A	N/A
Pfam	UHGV-0112423_25	PF11195	N/A	N/A	N/A	DUF2829
dbAPIS	UHGV-0112423_25	APIS029	N/A	N/A	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	N/A
structural_annotation	UHGV-0112423_25	PF11195	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0112423_27	1226322.HMPREF1545_00288	129.0	1.24e-37	N/A	N/A
PHROG	UHGV-0112423_28	phrog_3584	227.0	0	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0112423_28	1519439.JPJG01000060_gene1883	512.0	0	N/A	N/A
structural_annotation	UHGV-0112423_28	PF21578,NF033538	N/A	N/A	N/A	N/A
PHROG	UHGV-0112423_29	phrog_3896	76.0	3.1e-22	N/A	unknown function
UniRef90	UHGV-0112423_29	UniRef90_E5RWT2	53.9	0.0000000253	Srl	N/A
eggNOG-mapper	UHGV-0112423_29	397290.C810_01338	52.4	0.0000000157	N/A	N/A
PHROG	UHGV-0112423_31	phrog_606	54.8	0.0000000000000017	terminase small subunit	head and packaging
eggNOG-mapper	UHGV-0112423_31	1519439.JPJG01000060_gene1884	356.0	0	DNA-packaging protein gp3	N/A
Pfam	UHGV-0112423_31	PF16677	N/A	N/A	DNA-packaging protein gp3	GP3_package
structural_annotation	UHGV-0112423_31	PF16677	N/A	N/A	N/A	N/A
KOfam	UHGV-0112423_32	K06909	235.2	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0112423_32	phrog_3717	205.8	0	terminase large subunit	head and packaging
UniRef90	UHGV-0112423_32	UniRef90_A0A3D4D7N6	1031.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0112423_32	1519439.JPJG01000060_gene1885	1027.0	0	phage Terminase large subunit	N/A
Pfam	UHGV-0112423_32	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
NCBIFam	UHGV-0112423_32	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0112423_32	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0112423_32	PF04466,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0112423_33	phrog_156	331.0	0	portal protein	head and packaging
eggNOG-mapper	UHGV-0112423_33	1519439.JPJG01000060_gene1886	1257.0	0	N/A	N/A
structural_annotation	UHGV-0112423_33	PF16510,MF_04120,TIGR01542,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-0112423_34	phrog_30605	61.4	1.6e-17	N/A	unknown function
PHROG	UHGV-0112423_35	phrog_35275	190.9	0	N/A	unknown function
eggNOG-mapper	UHGV-0112423_35	1519439.JPJG01000060_gene1888	526.0	0	N/A	N/A
PHROG	UHGV-0112423_36	phrog_24113	72.1	6.4e-21	N/A	unknown function
eggNOG-mapper	UHGV-0112423_36	1519439.JPJG01000060_gene1889	244.0	0	N/A	N/A
structural_annotation	UHGV-0112423_36	PF11133,COG5471	N/A	N/A	N/A	N/A
PHROG	UHGV-0112423_37	phrog_371	131.6	6.8e-39	major head protein	head and packaging
UniRef90	UHGV-0112423_37	UniRef90_R6TFU9	300.0	0	Mu-like_gpT domain-containing protein	N/A
eggNOG-mapper	UHGV-0112423_37	1519439.JPJG01000060_gene1890	678.0	0	N/A	N/A
structural_annotation	UHGV-0112423_37	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0112423_38	phrog_12105	120.6	8.7e-36	N/A	unknown function
eggNOG-mapper	UHGV-0112423_38	1519439.JPJG01000060_gene1891	257.0	0	N/A	N/A
KOfam	UHGV-0112423_39	K19719	189.2	0	COL2A; collagen type II alpha	N/A
PHROG	UHGV-0112423_39	phrog_3420	95.1	4.9e-34	N/A	unknown function
UniRef90	UHGV-0112423_39	UniRef90_UPI00068BE71D	515.0	0	collagen-like protein	N/A
eggNOG-mapper	UHGV-0112423_39	1519439.JPJG01000060_gene1892	515.0	0	Collagen triple helix repeat (20 copies)	N/A
Pfam	UHGV-0112423_39	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
COG	UHGV-0112423_39	COG3064	N/A	N/A	Membrane protein TolA involved in colicin uptake	N/A
structural_annotation	UHGV-0112423_39	PF10651,NF033814	N/A	N/A	N/A	N/A
PHROG	UHGV-0112423_41	phrog_27545	145.8	3.78351e-44	N/A	unknown function
UniRef90	UHGV-0112423_41	UniRef90_A0A2V2GQB6	157.0	5.60519e-45	Chitin-binding type-3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0112423_41	1519439.JPJG01000060_gene1895	311.0	0	N/A	N/A
Pfam	UHGV-0112423_41	PF02839	N/A	N/A	Carbohydrate-binding module family 5/12	CBM_5_12
structural_annotation	UHGV-0112423_41	PF16170	N/A	N/A	N/A	N/A
PHROG	UHGV-0112423_42	phrog_4105	45.5	0.0000000000015	N/A	unknown function
PHROG	UHGV-0112423_44	phrog_13256	43.4	0.000000000004	N/A	unknown function
eggNOG-mapper	UHGV-0112423_44	428125.CLOLEP_01907	57.4	0.000000000369	N/A	N/A
KOfam	UHGV-0112423_45	K01447	118.6	7.5e-35	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0112423_45	phrog_670	125.2	7.2e-37	endolysin	lysis
UniRef90	UHGV-0112423_45	UniRef90_A0A352RPM1	391.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-0112423_45	1519439.JPJG01000060_gene1899	372.0	0	Ami_2	N/A
Pfam	UHGV-0112423_45	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
COG	UHGV-0112423_45	COG5632	N/A	N/A	N-acetylmuramoyl-L-alanine amidase CwlA	N/A
structural_annotation	UHGV-0112423_45	PF01510,MF_04111,NF008758,COG5632	N/A	N/A	N/A	N/A
PHROG	UHGV-0112423_46	phrog_7121	71.9	1.6e-21	tail fiber protein	tail
UniRef90	UHGV-0112423_46	UniRef90_U2SWT4	135.0	5.23e-32	Peptidase S74 domain-containing protein	N/A
eggNOG-mapper	UHGV-0112423_46	1226322.HMPREF1545_00783	135.0	8.77e-33	Chaperone of endosialidase	N/A
Pfam	UHGV-0112423_46	PF13884	N/A	N/A	Chaperone of endosialidase	Peptidase_S74
structural_annotation	UHGV-0112423_46	PF07902,NF041249	N/A	N/A	N/A	N/A
PHROG	UHGV-0112423_48	phrog_511	276.7	0	internal virion protein	head and packaging
eggNOG-mapper	UHGV-0112423_48	1519439.JPJG01000060_gene1903	1108.0	0	N/A	N/A
structural_annotation	UHGV-0112423_48	PF11134,TIGR03300,NF038126,COG1520	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0112423_49	1519439.JPJG01000060_gene1904	711.0	0	N/A	N/A
UniRef90	UHGV-0112423_50	UniRef90_A0A3D4D8G0	3330.0	0	PBECR5 domain-containing protein	N/A
eggNOG-mapper	UHGV-0112423_50	1519439.JPJG01000060_gene1905	2871.0	0	N/A	N/A
Pfam	UHGV-0112423_50	PF18798	N/A	N/A	Large polyvalent protein-associated domain 3	LPD3