UHGV-0115002 (vOTU-045721)

Viral Genome: UHGV-0115002

Genome Information

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Overview
UHGV ID	UHGV-0115002
vOTU ID	vOTU-045721
Representative Genome?	Yes
Source	GPD
Original Genome ID	uvig_309600
Associated Biosample	N/A
Viral Genome Confidence	Confident

Quality Assessment
CheckV Method	DTR
CheckV Completeness	100 (Complete)
Trimmed?	No
CheckV Viral Markers	8
CheckV Host Markers	0
Recoded?	No

Viral Content
geNomad score	0.9808
Viral Hallmark Genes (geNomad)	5
Plasmid Hallmark Genes (geNomad)	0
ViralVerify Prediction	Virus
ViralVerify Score	19.94
Jumbo Phage?	No

Genome Content
Length (bps)	42,562
GC Content	57.81%
Genetic Code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS Genes	56
CDS Density	93%
Average CDS Length (bps)	705.54
Total tRNA Genes	0
Suppressor tRNA Genes	0

Genome Content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0115002_2	phrog_22978	785.3	0	N/A	unknown function
UniRef90	UHGV-0115002_2	UniRef90_A0A1Y4WLF7	706.0	0	PBECR5 domain-containing protein	N/A
eggNOG-mapper	UHGV-0115002_2	1410650.JHWL01000003_gene2814	462.0	0	N/A	N/A
Pfam	UHGV-0115002_2	PF18814	N/A	N/A	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease5	PBECR5
PHROG	UHGV-0115002_6	phrog_16490	51.3	0.000000000000025	N/A	unknown function
eggNOG-mapper	UHGV-0115002_6	641112.ACOK01000103_gene525	110.0	1.69e-27	N/A	N/A
structural_annotation	UHGV-0115002_7	PF18573,NF033147	N/A	N/A	N/A	N/A
UniRef90	UHGV-0115002_8	UniRef90_A0A8F0WD75	71.2	0.00000000000253	RNA polymerase sigma factor/Ubiquitin-like protein	N/A
eggNOG-mapper	UHGV-0115002_8	1408437.JNJN01000043_gene801	72.8	0.000000000000119	N/A	N/A
KOfam	UHGV-0115002_9	K06400	282.5	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0115002_9	phrog_95	289.4	0	integrase	integration and excision
UniRef90	UHGV-0115002_9	UniRef90_A0A3A9I9T1	332.0	0	Recombinase family protein	N/A
eggNOG-mapper	UHGV-0115002_9	357809.Cphy_2997	285.0	0	COG COG1961 Site-specific recombinases, DNA invertase Pin homologs	N/A
Pfam	UHGV-0115002_9	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0115002_9	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-0115002_9	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-0115002_9	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0115002_9	PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A
UniRef90	UHGV-0115002_10	UniRef90_A0A8D9UHA6	84.0	1.81e-17	Helix-turn-helix XRE-family like protein	N/A
Pfam	UHGV-0115002_10	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0115002_10	COG1813	N/A	N/A	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	N/A
structural_annotation	UHGV-0115002_10	PF01381,MF_02017,TIGR03070,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-0115002_13	phrog_954	193.7	0	DNA methyltransferase	other
UniRef90	UHGV-0115002_13	UniRef90_A0A8G0W4U8	287.0	0	Class I SAM-dependent methyltransferase	N/A
eggNOG-mapper	UHGV-0115002_13	411461.DORFOR_01143	288.0	0	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA	N/A
PADLOC	UHGV-0115002_13	MTase_II_00074	194.4	0	Type II methyltransferase	RM
Pfam	UHGV-0115002_13	PF08241	N/A	N/A	Methyltransferase domain	Methyltransf_11
COG	UHGV-0115002_13	COG1092	N/A	N/A	23S rRNA G2069 N7-methylase RlmK or C1962 C5-methylase RlmI	N/A
structural_annotation	UHGV-0115002_13	PF05148,MF_03044,NF033398,COG1041	N/A	N/A	N/A	N/A
KOfam	UHGV-0115002_17	K00390	100.3	4.3e-30	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	N/A
PHROG	UHGV-0115002_17	phrog_424	121.4	6.6e-36	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0115002_17	UniRef90_UPI001C034617	279.0	0	phosphoadenosine phosphosulfate reductase family protein	N/A
eggNOG-mapper	UHGV-0115002_17	1232452.BAIB02000007_gene1640	259.0	0	Phosphoadenosine phosphosulfate reductase	N/A
PADLOC	UHGV-0115002_17	BrxP_00001	41.5	1.5e-23	BrxP	BREX
Pfam	UHGV-0115002_17	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-0115002_17	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-0115002_17	PF01507,MF_00063,NF010369,COG0175	N/A	N/A	N/A	N/A
KOfam	UHGV-0115002_18	K00558	141.1	0	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-0115002_18	phrog_116	179.8	0	DNA methyltransferase	other
UniRef90	UHGV-0115002_18	UniRef90_A0A316NA61	347.0	0	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-0115002_18	718252.FP2_16350	320.0	0	C-5 cytosine-specific DNA methylase	N/A
PADLOC	UHGV-0115002_18	oMTase_00004	171.5	0	orphan methyltransferase	RM
Pfam	UHGV-0115002_18	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
COG	UHGV-0115002_18	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
KOfam	UHGV-0115002_20	K01160	46.8	0.00000000000077	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0115002_20	phrog_4632	55.4	3.6e-17	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0115002_20	UniRef90_A0A7X8IB41	115.0	6.88e-31	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0115002_20	469604.HMPREF0946_00819	55.1	0.0000000519	N/A	N/A
structural_annotation	UHGV-0115002_20	PF19595,NF007305,COG4570	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0115002_21	1410650.JHWL01000003_gene2848	56.6	0.000000563	N/A	N/A
structural_annotation	UHGV-0115002_21	PF19808	N/A	N/A	N/A	N/A
KOfam	UHGV-0115002_22	K03111	156.6	0	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0115002_22	phrog_44	151.5	4.2039e-45	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0115002_22	UniRef90_A0A810QFR8	179.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0115002_22	1007096.BAGW01000023_gene151	176.0	0	Single-strand binding protein family	N/A
Pfam	UHGV-0115002_22	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0115002_22	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0115002_22	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0115002_22	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0115002_22	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0115002_23	PF12844,MF_00535,NF041951,COG5499	N/A	N/A	N/A	N/A
PHROG	UHGV-0115002_25	phrog_72	49.1	0.000000000000047	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0115002_25	UniRef90_A0A8D9PDS2	246.0	0	NinB protein	N/A
eggNOG-mapper	UHGV-0115002_25	445972.ANACOL_01825	125.0	3.32e-34	N/A	N/A
structural_annotation	UHGV-0115002_25	PF05772	N/A	N/A	N/A	N/A
UniRef90	UHGV-0115002_26	UniRef90_B0PAM4	136.0	3.39e-37	YqaJ domain-containing protein	N/A
structural_annotation	UHGV-0115002_26	PF09588,TIGR04328,COG5377	N/A	N/A	N/A	N/A
UniRef90	UHGV-0115002_27	UniRef90_A0A845QLQ8	189.0	0	N/A	N/A
eggNOG-mapper	UHGV-0115002_27	33035.JPJF01000135_gene5082	119.0	1.31e-30	N/A	N/A
Pfam	UHGV-0115002_27	PF06378	N/A	N/A	N/A	DUF1071
structural_annotation	UHGV-0115002_27	PF06378,TIGR00607,COG5055	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0115002_30	PF13384	N/A	N/A	N/A	N/A
KOfam	UHGV-0115002_35	K22300	53.8	0.0000000000000047	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0115002_35	phrog_8	42.9	0.0000000000097	transcriptional regulator	transcription regulation
UniRef90	UHGV-0115002_35	UniRef90_A0A810Q5N3	126.0	4.24e-35	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0115002_35	748224.HMPREF9436_01444	105.0	1.67e-27	N/A	N/A
Pfam	UHGV-0115002_35	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0115002_35	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0115002_35	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-0115002_38	UniRef90_A0A4Q3LWZ5	47.0	0.00000773	Toxin-antitoxin system HicB family antitoxin	N/A
Pfam	UHGV-0115002_38	PF01402	N/A	N/A	Ribbon-helix-helix protein, copG family	RHH_1
UniRef90	UHGV-0115002_40	UniRef90_UPI00141260EC	126.0	2.53e-34	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0115002_40	1226322.HMPREF1545_00042	108.0	4.38e-28	N/A	N/A
KOfam	UHGV-0115002_41	K06909	142.6	3.69943e-42	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0115002_41	phrog_979	137.9	2.40042e-42	terminase large subunit	head and packaging
UniRef90	UHGV-0115002_41	UniRef90_A0A2V2GR60	646.0	0	Terminase-like family protein	N/A
eggNOG-mapper	UHGV-0115002_41	1410650.JHWL01000003_gene2834	613.0	0	N/A	N/A
Pfam	UHGV-0115002_41	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0115002_41	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0115002_41	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0115002_42	phrog_156	333.7	0	portal protein	head and packaging
eggNOG-mapper	UHGV-0115002_42	1410650.JHWL01000003_gene2833	615.0	0	N/A	N/A
structural_annotation	UHGV-0115002_42	PF16510,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0115002_43	K07584	48.5	0.00000000000016	N/A	N/A
PHROG	UHGV-0115002_43	phrog_4478	44.3	0.0000000000022	peptidase	other
UniRef90	UHGV-0115002_43	UniRef90_UPI0015B63E39	52.8	0.00000164	ribosomal-processing cysteine protease Prp	N/A
Pfam	UHGV-0115002_43	PF04327	N/A	N/A	Cysteine protease Prp	Peptidase_Prp
COG	UHGV-0115002_43	COG2868	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0115002_43	PF04327,NF011133,COG2868	N/A	N/A	N/A	N/A
PHROG	UHGV-0115002_44	phrog_13908	251.7	0	N/A	unknown function
UniRef90	UHGV-0115002_44	UniRef90_UPI0012DFC3C8	118.0	1.14e-26	ribosomal-processing cysteine protease Prp	N/A
eggNOG-mapper	UHGV-0115002_44	1410650.JHWL01000003_gene2831	109.0	4.8e-25	N/A	N/A
PHROG	UHGV-0115002_45	phrog_1357	277.0	0	major head protein	head and packaging
UniRef90	UHGV-0115002_45	UniRef90_A0A2V2GQW4	376.0	0	N4-gp56 family major capsid protein	N/A
eggNOG-mapper	UHGV-0115002_45	748224.HMPREF9436_01399	352.0	0	N/A	N/A
Pfam	UHGV-0115002_45	PF13252	N/A	N/A	N/A	DUF4043
NCBIFam	UHGV-0115002_45	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-0115002_45	PF13252,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0115002_46	phrog_15239	49.0	0.000000000000094	N/A	unknown function
PHROG	UHGV-0115002_47	phrog_12105	123.6	9.6e-37	N/A	unknown function
eggNOG-mapper	UHGV-0115002_47	1226322.HMPREF1545_03850	81.6	3.12e-18	N/A	N/A
PHROG	UHGV-0115002_48	phrog_511	221.6	0	internal virion protein	head and packaging
eggNOG-mapper	UHGV-0115002_48	1410650.JHWL01000003_gene2827	357.0	0	N/A	N/A
structural_annotation	UHGV-0115002_48	PF11134,TIGR03300,NF038126,COG1520	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0115002_49	NF038340	N/A	N/A	N/A	N/A
PHROG	UHGV-0115002_50	phrog_372	281.3	0	tail protein	tail
UniRef90	UHGV-0115002_50	UniRef90_A0A3N0HXV0	233.0	0	Pilus assembly protein	N/A
eggNOG-mapper	UHGV-0115002_50	658655.HMPREF0988_00525	219.0	0	the current gene model (or a revised gene model) may contain a frame shift	N/A
Pfam	UHGV-0115002_50	PF05895	N/A	N/A	N/A	DUF859
COG	UHGV-0115002_50	COG4675	N/A	N/A	Phage tail collar domain	N/A
structural_annotation	UHGV-0115002_50	PF05895,MF_04116,NF010681,COG3291	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0115002_51	PF10651,TIGR04339	N/A	N/A	N/A	N/A
PHROG	UHGV-0115002_52	phrog_30034	111.7	8.6e-33	N/A	unknown function
UniRef90	UHGV-0115002_52	UniRef90_A0A3D1XGA4	223.0	0	Chitin-binding type-3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0115002_52	1122971.BAME01000151_gene6566	105.0	7.36e-26	N/A	N/A
Pfam	UHGV-0115002_52	PF02839	N/A	N/A	Carbohydrate-binding module family 5/12	CBM_5_12
PHROG	UHGV-0115002_53	phrog_199	79.9	2.7e-23	holin	lysis
UniRef90	UHGV-0115002_53	UniRef90_UPI001BEFC888	215.0	0	Phage holin family protein	N/A
eggNOG-mapper	UHGV-0115002_53	1160721.RBI_I01565	142.0	2.67998e-41	Bacteriophage holin family	N/A
Pfam	UHGV-0115002_53	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-0115002_53	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-0115002_53	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-0115002_53	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
KOfam	UHGV-0115002_54	K01447	90.9	2.1e-26	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0115002_54	phrog_35436	117.8	7e-35	amidase	lysis
UniRef90	UHGV-0115002_54	UniRef90_A0A350TLR9	216.0	0	Peptidoglycan-binding domain-containing protein	N/A
eggNOG-mapper	UHGV-0115002_54	1504823.CCMM01000008_gene1019	184.0	0	Ami_2	N/A
Pfam	UHGV-0115002_54	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
Pfam	UHGV-0115002_54	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-0115002_54	COG3409	N/A	N/A	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	N/A
structural_annotation	UHGV-0115002_54	PF01510,PF01471,MF_04111,NF008758,COG3023	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0115002_55	1410650.JHWL01000003_gene2815	158.0	1.07003e-41	N/A	N/A
PHROG	UHGV-0115002_56	phrog_22978	100.9	4.9e-30	N/A	unknown function
eggNOG-mapper	UHGV-0115002_56	693746.OBV_23800	122.0	2.28e-25	N/A	N/A