UHGV-0116641 (vOTU-156780)

Viral Genome: UHGV-0116641

Genome Information

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Overview
UHGV ID	UHGV-0116641
vOTU ID	vOTU-156780
Representative Genome?	Yes
Source	GPD
Original Genome ID	uvig_291470
Associated Biosample	N/A
Viral Genome Confidence	Confident

Quality Assessment
CheckV Method	AAI-based
CheckV Completeness	52.32 (Medium-quality)
Trimmed?	No
CheckV Viral Markers	10
CheckV Host Markers	1
Recoded?	No

Viral Content
geNomad score	0.9657
Viral Hallmark Genes (geNomad)	1
Plasmid Hallmark Genes (geNomad)	0
ViralVerify Prediction	Uncertain - viral or bacterial
ViralVerify Score	-4.37
Jumbo Phage?	No

Genome Content
Length (bps)	31,548
GC Content	48.73%
Genetic Code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS Genes	61
CDS Density	90%
Average CDS Length (bps)	463.28
Total tRNA Genes	1
Suppressor tRNA Genes	0

Genome Content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 52.32)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
structural_annotation	UHGV-0116641_1	PF08769	N/A	N/A	N/A	N/A
PHROG	UHGV-0116641_3	phrog_478	127.1	7.5e-38	site-specific recombination directionality factor RDF	integration and excision
UniRef90	UHGV-0116641_3	UniRef90_A0A373Q857	166.0	0	YopX domain-containing protein	N/A
eggNOG-mapper	UHGV-0116641_3	478749.BRYFOR_08526	100.0	2.53e-25	N/A	N/A
KOfam	UHGV-0116641_5	K03465	188.3	0	thyX, thy1; thymidylate synthase (FAD) [EC:2.1.1.148]	N/A
PHROG	UHGV-0116641_5	phrog_85	129.7	2.2e-38	thymidylate synthase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0116641_5	UniRef90_A0A3A6ECX6	461.0	0	FAD-dependent thymidylate synthase	N/A
eggNOG-mapper	UHGV-0116641_5	397290.C810_05227	261.0	0	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor, and NADPH and FADH(2) as the reductant	N/A
Pfam	UHGV-0116641_5	PF02511	N/A	N/A	Thymidylate synthase complementing protein	Thy1
NCBIFam	UHGV-0116641_5	TIGR02170.1	N/A	N/A	FAD-dependent thymidylate synthase	N/A
COG	UHGV-0116641_5	COG1351	N/A	N/A	Thymidylate synthase ThyX, FAD-dependent family	N/A
structural_annotation	UHGV-0116641_5	PF02511,MF_01408,TIGR02170,COG1351	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0116641_7	PF14120	N/A	N/A	N/A	N/A
PHROG	UHGV-0116641_9	phrog_16725	48.1	0.000000000000046	N/A	unknown function
PHROG	UHGV-0116641_14	phrog_19852	98.6	2.5e-29	N/A	unknown function
eggNOG-mapper	UHGV-0116641_14	742733.HMPREF9469_05061	48.5	0.000000391	N/A	N/A
PHROG	UHGV-0116641_15	phrog_18716	184.7	0	N/A	unknown function
UniRef90	UHGV-0116641_15	UniRef90_A0A2K9V381	346.0	0	N/A	N/A
eggNOG-mapper	UHGV-0116641_15	665959.HMPREF1013_00856	128.0	6.35e-36	N/A	N/A
Pfam	UHGV-0116641_15	PF18909	N/A	N/A	dATP/dGTP diphosphohydrolase, N-terminal	dGTP_diPhyd_N
structural_annotation	UHGV-0116641_15	PF18909,COG1996	N/A	N/A	N/A	N/A
PHROG	UHGV-0116641_20	phrog_62	133.3	1.5e-39	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0116641_20	UniRef90_UPI001D08DE3D	581.0	0	DEAD/DEAH box helicase family protein	N/A
eggNOG-mapper	UHGV-0116641_20	665956.HMPREF1032_00650	570.0	0	Helicase conserved C-terminal domain	N/A
Pfam	UHGV-0116641_20	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-0116641_20	COG0553	N/A	N/A	Superfamily II DNA or RNA helicase, SNF2 family	N/A
structural_annotation	UHGV-0116641_20	PF02399,MF_01821,NF038318,COG0553	N/A	N/A	N/A	N/A
PHROG	UHGV-0116641_24	phrog_3777	124.1	4.2e-37	N/A	unknown function
UniRef90	UHGV-0116641_24	UniRef90_A0A2J4JS39	254.0	0	N/A	N/A
eggNOG-mapper	UHGV-0116641_24	411471.SUBVAR_04704	116.0	1.17e-28	Antirestriction protein (ArdA)	N/A
Pfam	UHGV-0116641_24	PF12957	N/A	N/A	N/A	DUF3846
COG	UHGV-0116641_24	COG4734	N/A	N/A	Antirestriction protein ArdA	N/A
structural_annotation	UHGV-0116641_24	PF12957	N/A	N/A	N/A	N/A
UniRef90	UHGV-0116641_25	UniRef90_UPI001F3ECC8A	71.6	0.0000000000000891	N/A	N/A
eggNOG-mapper	UHGV-0116641_25	397290.C810_05229	59.3	0.00000000098	N/A	N/A
structural_annotation	UHGV-0116641_25	PF14359,COG3613	N/A	N/A	N/A	N/A
PHROG	UHGV-0116641_26	phrog_4787	139.3	1.49995e-41	single strand annealing protein	DNA, RNA and nucleotide metabolism
structural_annotation	UHGV-0116641_26	PF21265,MF_04153	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0116641_27	PF12643,PF09939,MF_01020,TIGR03188,NF010403,COG3881,COG0140	N/A	N/A	N/A	N/A
KOfam	UHGV-0116641_28	K02319	40.1	0.00000000000055	pol; DNA polymerase, archaea type [EC:2.7.7.7]	N/A
PHROG	UHGV-0116641_28	phrog_4210	2045.6	0	DNA polymerase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0116641_28	UniRef90_A0A2J4JS43	2676.0	0	SF3 helicase domain-containing protein	N/A
eggNOG-mapper	UHGV-0116641_28	428125.CLOLEP_01375	1640.0	0	DNA polymerase type-B family	N/A
Pfam	UHGV-0116641_28	PF19263	N/A	N/A	N/A	DUF5906
structural_annotation	UHGV-0116641_28	PF00136,PF05272,PF09250,MF_04100,MF_00016,NF005477,NF004420,COG3378,COG0417	N/A	N/A	N/A	N/A
PHROG	UHGV-0116641_30	phrog_4678	220.6	0	N/A	unknown function
eggNOG-mapper	UHGV-0116641_30	428125.CLOLEP_01372	185.0	0	N/A	N/A
PHROG	UHGV-0116641_31	phrog_4695	103.8	3.92364e-44	N/A	unknown function
eggNOG-mapper	UHGV-0116641_31	411460.RUMTOR_02032	74.3	0.0000000000000521	N/A	N/A
PHROG	UHGV-0116641_32	phrog_14968	112.2	1.4e-33	N/A	unknown function
UniRef90	UHGV-0116641_32	UniRef90_A0A2J4JS60	112.0	1.79e-31	Histidine kinase	N/A
eggNOG-mapper	UHGV-0116641_32	742733.HMPREF9469_05071	73.6	5.41e-17	N/A	N/A
PHROG	UHGV-0116641_34	phrog_2152	330.5	0	N/A	unknown function
UniRef90	UHGV-0116641_34	UniRef90_UPI001D085778	243.0	0	N/A	N/A
eggNOG-mapper	UHGV-0116641_34	478749.BRYFOR_08565	212.0	0	N/A	N/A
Pfam	UHGV-0116641_34	PF19880	N/A	N/A	N/A	DUF6353
structural_annotation	UHGV-0116641_34	PF19880	N/A	N/A	N/A	N/A
PHROG	UHGV-0116641_35	phrog_4079	203.2	0	N/A	unknown function
eggNOG-mapper	UHGV-0116641_35	411460.RUMTOR_02027	100.0	1.52e-23	N/A	N/A
PHROG	UHGV-0116641_37	phrog_2152	216.8	0	N/A	unknown function
UniRef90	UHGV-0116641_37	UniRef90_UPI0011CA98EE	127.0	4.24e-32	N/A	N/A
eggNOG-mapper	UHGV-0116641_37	665956.HMPREF1032_00634	172.0	0	N/A	N/A
Pfam	UHGV-0116641_37	PF19880	N/A	N/A	N/A	DUF6353
structural_annotation	UHGV-0116641_37	PF19880	N/A	N/A	N/A	N/A
PHROG	UHGV-0116641_40	phrog_2152	255.5	0	N/A	unknown function
UniRef90	UHGV-0116641_40	UniRef90_UPI001C0099E2	395.0	0	N/A	N/A
eggNOG-mapper	UHGV-0116641_40	665956.HMPREF1032_00632	148.0	1.19e-40	N/A	N/A
Pfam	UHGV-0116641_40	PF19880	N/A	N/A	N/A	DUF6353
structural_annotation	UHGV-0116641_40	PF19880	N/A	N/A	N/A	N/A
PHROG	UHGV-0116641_42	phrog_18243	47.0	0.00000000000048	N/A	unknown function
UniRef90	UHGV-0116641_42	UniRef90_A0A416KK26	58.2	0.00000000142	CTP synthase	N/A
eggNOG-mapper	UHGV-0116641_45	428125.CLOLEP_01389	73.9	4.46e-16	N/A	N/A
structural_annotation	UHGV-0116641_45	COG2886	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0116641_46	428125.CLOLEP_01388	65.1	0.000000000000493	N/A	N/A
PHROG	UHGV-0116641_50	phrog_17256	223.2	0	N/A	unknown function
eggNOG-mapper	UHGV-0116641_50	742733.HMPREF9469_05087	161.0	0	N/A	N/A
Pfam	UHGV-0116641_51	PF00971	N/A	N/A	EIAV coat protein, gp90	EIAV_GP90
PHROG	UHGV-0116641_52	phrog_15309	105.6	1.7e-31	N/A	unknown function
structural_annotation	UHGV-0116641_53	PF12659	N/A	N/A	N/A	N/A
PHROG	UHGV-0116641_56	phrog_11237	167.2	0	N/A	unknown function
eggNOG-mapper	UHGV-0116641_56	742740.HMPREF9474_02326	136.0	1.61e-39	N/A	N/A
PHROG	UHGV-0116641_57	phrog_6058	78.7	4.5e-23	N/A	unknown function
UniRef90	UHGV-0116641_57	UniRef90_A0A4Q7P3C7	129.0	2.29e-37	Prolyl-tRNA synthetase	N/A
eggNOG-mapper	UHGV-0116641_57	665956.HMPREF1032_00623	127.0	1.1e-37	N/A	N/A
KOfam	UHGV-0116641_58	K14059	91.5	1.5e-26	int; integrase	N/A
PHROG	UHGV-0116641_58	phrog_1	125.4	6.4e-37	integrase	integration and excision
UniRef90	UHGV-0116641_58	UniRef90_A0A373NVS6	480.0	0	Integrase	N/A
eggNOG-mapper	UHGV-0116641_58	428125.CLOLEP_01345	396.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0116641_58	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0116641_58	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0116641_58	PF00589,MF_01808,NF007246,COG4974	N/A	N/A	N/A	N/A
KOfam	UHGV-0116641_59	K07029	196.6	0	dagK; diacylglycerol kinase (ATP) [EC:2.7.1.107]	N/A
PHROG	UHGV-0116641_59	phrog_8777	89.8	2.8e-26	N/A	unknown function
UniRef90	UHGV-0116641_59	UniRef90_A0A1C5P7X7	658.0	0	Diacylglycerol kinase	N/A
eggNOG-mapper	UHGV-0116641_59	748224.HMPREF9436_00130	660.0	0	Lipid kinase, YegS Rv2252 BmrU family	N/A
Pfam	UHGV-0116641_59	PF00781	N/A	N/A	Diacylglycerol kinase catalytic domain	DAGK_cat
Pfam	UHGV-0116641_59	PF19279	N/A	N/A	YegS C-terminal NAD kinase beta sandwich-like domain	YegS_C
NCBIFam	UHGV-0116641_59	TIGR00147.1	N/A	N/A	YegS/Rv2252/BmrU family lipid kinase	N/A
COG	UHGV-0116641_59	COG1597	N/A	N/A	Phosphatidylglycerol kinase, diacylglycerol kinase family	N/A
UniRef90	UHGV-0116641_60	UniRef90_A0A396LJW2	1065.0	0	Flg_new_2 domain-containing protein	N/A
eggNOG-mapper	UHGV-0116641_60	411483.FAEPRAA2165_03131	101.0	1.74e-19	Leucine-rich repeat (LRR) protein	N/A
Pfam	UHGV-0116641_60	PF18998	N/A	N/A	Divergent InlB B-repeat domain	Flg_new_2
COG	UHGV-0116641_60	COG4886	N/A	N/A	Leucine-rich repeat (LRR) protein	N/A
KOfam	UHGV-0116641_61	K03696	216.3	0	clpC; ATP-dependent Clp protease ATP-binding subunit ClpC	N/A
PHROG	UHGV-0116641_61	phrog_4871	187.9	0	ATP-dependent protease	other
UniRef90	UHGV-0116641_61	UniRef90_A0A1C5UCT2	330.0	0	Negative regulator of genetic competence ClpC/MecB	N/A
eggNOG-mapper	UHGV-0116641_61	748224.HMPREF9436_00129	388.0	0	Belongs to the ClpA ClpB family	N/A
Pfam	UHGV-0116641_61	PF07724	N/A	N/A	AAA domain (Cdc48 subfamily)	AAA_2
Pfam	UHGV-0116641_61	PF10431	N/A	N/A	C-terminal, D2-small domain, of ClpB protein	ClpB_D2-small
COG	UHGV-0116641_61	COG0542	N/A	N/A	ATP-dependent Clp protease, ATP-binding subunit ClpA	N/A