UHGV-0116824 (vOTU-024354)

Viral Genome: UHGV-0116824

Genome Information

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Overview
UHGV ID	UHGV-0116824
vOTU ID	vOTU-024354
Representative Genome?	Yes
Source	GPD
Original Genome ID	uvig_276274
Associated Biosample	SAMEA3879503
Viral Genome Confidence	Confident

Quality Assessment
CheckV Method	AAI-based
CheckV Completeness	72.98 (Medium-quality)
Trimmed?	No
CheckV Viral Markers	4
CheckV Host Markers	0
Recoded?	No

Viral Content
geNomad score	0.9737
Viral Hallmark Genes (geNomad)	4
Plasmid Hallmark Genes (geNomad)	0
ViralVerify Prediction	Uncertain - viral or bacterial
ViralVerify Score	6.59
Jumbo Phage?	No

Genome Content
Length (bps)	28,229
GC Content	59.87%
Genetic Code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS Genes	41
CDS Density	85%
Average CDS Length (bps)	581.85
Total tRNA Genes	0
Suppressor tRNA Genes	0

Genome Content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 72.98)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
eggNOG-mapper	UHGV-0116824_1	1235797.C816_01492	54.3	0.0000000342	N/A	N/A
KOfam	UHGV-0116824_3	K14059	193.1	0	int; integrase	N/A
PHROG	UHGV-0116824_3	phrog_1	187.9	0	integrase	integration and excision
UniRef90	UHGV-0116824_3	UniRef90_A0A564U055	742.0	0	Transposase from transposon Tn916	N/A
eggNOG-mapper	UHGV-0116824_3	748224.HMPREF9436_01375	582.0	0	Phage integrase family	N/A
Pfam	UHGV-0116824_3	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0116824_3	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0116824_3	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-0116824_4	phrog_8887	77.3	1.1e-22	toxin	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0116824_4	UniRef90_UPI00195BCD4A	155.0	0	type II toxin-antitoxin system HicA family toxin	N/A
eggNOG-mapper	UHGV-0116824_4	633697.EubceDRAFT1_2398	81.3	3.96e-19	HicA toxin of bacterial toxin-antitoxin,	N/A
Pfam	UHGV-0116824_4	PF07927	N/A	N/A	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
structural_annotation	UHGV-0116824_4	COG1724	N/A	N/A	N/A	N/A
PHROG	UHGV-0116824_5	phrog_9151	136.8	8.30003e-41	HicB-like antitoxin	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0116824_5	UniRef90_UPI00195E01E3	137.0	3.83e-39	type II toxin-antitoxin system HicB family antitoxin	N/A
eggNOG-mapper	UHGV-0116824_5	1392502.JNIO01000008_gene1606	120.0	3.93e-33	protein encoded in hypervariable junctions of pilus gene clusters	N/A
Pfam	UHGV-0116824_5	PF05534	N/A	N/A	HicB family	HicB
COG	UHGV-0116824_5	COG4226	N/A	N/A	Predicted nuclease of the RNAse H fold, HicB family	N/A
structural_annotation	UHGV-0116824_5	PF21748,PF07878,NF041264,COG4226	N/A	N/A	N/A	N/A
KOfam	UHGV-0116824_7	K22300	62.7	8.5e-18	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0116824_7	phrog_8	47.8	0.00000000000033	transcriptional regulator	transcription regulation
UniRef90	UHGV-0116824_7	UniRef90_A0A564TXA0	134.0	8.06999e-40	HTH-type transcriptional regulator ImmR	N/A
eggNOG-mapper	UHGV-0116824_7	760568.Desku_1400	54.3	0.00000000588	sequence-specific DNA binding	N/A
Pfam	UHGV-0116824_7	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0116824_7	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0116824_7	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0116824_9	K22300	80.8	2.4e-23	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0116824_9	phrog_8	60.4	4.9e-17	transcriptional regulator	transcription regulation
UniRef90	UHGV-0116824_9	UniRef90_A0A564TH61	238.0	0	HTH-type transcriptional regulator ImmR	N/A
eggNOG-mapper	UHGV-0116824_9	665956.HMPREF1032_04076	89.0	8.45e-20	Peptidase S24-like	N/A
Pfam	UHGV-0116824_9	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0116824_9	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0116824_9	PF13560,MF_02017,NF041951,COG1396	N/A	N/A	N/A	N/A
UniRef90	UHGV-0116824_10	UniRef90_A0A564THJ6	126.0	8.52e-37	Helix-turn-helix domain protein	N/A
eggNOG-mapper	UHGV-0116824_10	445972.ANACOL_00136	53.1	0.0000000178	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-0116824_10	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-0116824_10	PF13560,NF041951,COG1396	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0116824_12	PF20385,NF040556	N/A	N/A	N/A	N/A
UniRef90	UHGV-0116824_13	UniRef90_UPI000A0213FB	73.9	6.95e-16	helix-turn-helix domain-containing protein	N/A
structural_annotation	UHGV-0116824_13	PF05339,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0116824_14	phrog_5079	58.8	8.4e-17	N/A	unknown function
eggNOG-mapper	UHGV-0116824_14	1029718.SFBM_1171	50.8	0.0000000348	N/A	N/A
eggNOG-mapper	UHGV-0116824_15	1232443.BAIA02000032_gene1908	46.2	0.00000689	N/A	N/A
AcrCatalog	UHGV-0116824_15	cluster_195449	33.9	0.0000253	NA	N/A
PHROG	UHGV-0116824_16	phrog_3777	45.1	0.0000000000012	N/A	unknown function
UniRef90	UHGV-0116824_16	UniRef90_UPI00130E0E41	233.0	0	N/A	N/A
Pfam	UHGV-0116824_16	PF12957	N/A	N/A	N/A	DUF3846
structural_annotation	UHGV-0116824_16	PF12957	N/A	N/A	N/A	N/A
UniRef90	UHGV-0116824_17	UniRef90_A0A3E2U472	187.0	0	DNA-binding protein	N/A
Pfam	UHGV-0116824_17	PF12728	N/A	N/A	Helix-turn-helix domain	HTH_17
NCBIFam	UHGV-0116824_17	TIGR01764.1	N/A	N/A	excisionase family DNA-binding protein	N/A
structural_annotation	UHGV-0116824_17	PF12728,TIGR01764,COG3311	N/A	N/A	N/A	N/A
PHROG	UHGV-0116824_20	phrog_24484	98.4	5.8e-29	N/A	unknown function
PHROG	UHGV-0116824_23	phrog_3584	149.1	2.8026e-44	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0116824_23	525255.HMPREF0077_0972	129.0	7.2e-33	N/A	N/A
structural_annotation	UHGV-0116824_23	PF21578,NF033538	N/A	N/A	N/A	N/A
UniRef90	UHGV-0116824_24	UniRef90_A0A844DP33	107.0	3.78e-28	SqdX protein	N/A
structural_annotation	UHGV-0116824_24	PF06530,MF_00674,TIGR01637,COG1342	N/A	N/A	N/A	N/A
UniRef90	UHGV-0116824_26	UniRef90_UPI00195E9406	85.9	6.17e-17	transposase	N/A
Pfam	UHGV-0116824_26	PF01527	N/A	N/A	Transposase	HTH_Tnp_1
KOfam	UHGV-0116824_27	K06909	96.8	2.7e-28	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0116824_27	phrog_979	201.4	0	terminase large subunit	head and packaging
UniRef90	UHGV-0116824_27	UniRef90_A0A329UJ95	877.0	0	Terminase-like family protein	N/A
eggNOG-mapper	UHGV-0116824_27	748224.HMPREF9436_01395	842.0	0	Terminase-like family	N/A
Pfam	UHGV-0116824_27	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0116824_27	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0116824_27	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0116824_28	phrog_156	307.1	0	portal protein	head and packaging
eggNOG-mapper	UHGV-0116824_28	748224.HMPREF9436_01396	862.0	0	N/A	N/A
structural_annotation	UHGV-0116824_28	PF16510,MF_04120,TIGR01538,COG4383	N/A	N/A	N/A	N/A
KOfam	UHGV-0116824_30	K07584	55.4	8.8e-16	N/A	N/A
PHROG	UHGV-0116824_30	phrog_13908	178.3	0	N/A	unknown function
UniRef90	UHGV-0116824_30	UniRef90_A0A174CZ20	267.0	0	Predicted ribosomal protein	N/A
eggNOG-mapper	UHGV-0116824_30	748224.HMPREF9436_01398	228.0	0	Cysteine protease Prp	N/A
Pfam	UHGV-0116824_30	PF04327	N/A	N/A	Cysteine protease Prp	Peptidase_Prp
COG	UHGV-0116824_30	COG2868	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0116824_30	PF04327,NF011133,COG2868	N/A	N/A	N/A	N/A
PHROG	UHGV-0116824_31	phrog_1357	278.6	0	major head protein	head and packaging
UniRef90	UHGV-0116824_31	UniRef90_A0A844DTU7	478.0	0	N4-gp56 family major capsid protein	N/A
eggNOG-mapper	UHGV-0116824_31	748224.HMPREF9436_01399	469.0	0	N/A	N/A
Pfam	UHGV-0116824_31	PF13252	N/A	N/A	N/A	DUF4043
NCBIFam	UHGV-0116824_31	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-0116824_31	PF13252,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0116824_32	phrog_15239	92.7	2e-27	N/A	unknown function
PHROG	UHGV-0116824_33	phrog_12105	70.4	2.9e-20	N/A	unknown function
PHROG	UHGV-0116824_34	phrog_511	187.6	0	internal virion protein	head and packaging
eggNOG-mapper	UHGV-0116824_34	748224.HMPREF9436_01402	709.0	0	N/A	N/A
structural_annotation	UHGV-0116824_34	PF11134,TIGR03300,NF038126,COG1520	N/A	N/A	N/A	N/A
UniRef90	UHGV-0116824_35	UniRef90_A0A329TFM2	74.7	1.55e-16	Rho-GAP domain-containing protein	N/A
eggNOG-mapper	UHGV-0116824_36	748224.HMPREF9436_01404	92.4	1.03e-20	lysozyme activity	N/A
COG	UHGV-0116824_36	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
KOfam	UHGV-0116824_37	K18843	78.3	1.4e-22	hicB; antitoxin HicB	N/A
PHROG	UHGV-0116824_37	phrog_497	77.5	2.5e-22	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0116824_37	UniRef90_A0A329TU28	217.0	0	HicB family protein	N/A
eggNOG-mapper	UHGV-0116824_37	718252.FP2_04880	259.0	0	HicB_like antitoxin of bacterial toxin-antitoxin system	N/A
Pfam	UHGV-0116824_37	PF15919	N/A	N/A	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
COG	UHGV-0116824_37	COG1598	N/A	N/A	Antitoxin component HicB of the HicAB toxin-antitoxin system	N/A
structural_annotation	UHGV-0116824_37	PF15919,COG1598	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0116824_38	718252.FP2_04890	308.0	0	hydrolase, family 25	N/A
COG	UHGV-0116824_38	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-0116824_38	MF_02066	N/A	N/A	N/A	N/A
KOfam	UHGV-0116824_39	K18843	49.9	0.00000000000007	hicB; antitoxin HicB	N/A
PHROG	UHGV-0116824_39	phrog_497	75.0	1.4e-21	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0116824_39	UniRef90_A0A564U069	271.0	0	HicB-like domain-containing protein	N/A
eggNOG-mapper	UHGV-0116824_39	1235792.C808_03055	203.0	0	Toxin-antitoxin system, antitoxin component, HicB family	N/A
COG	UHGV-0116824_39	COG1598	N/A	N/A	Antitoxin component HicB of the HicAB toxin-antitoxin system	N/A
structural_annotation	UHGV-0116824_39	PF15919,COG1598	N/A	N/A	N/A	N/A
PHROG	UHGV-0116824_40	phrog_353	72.5	3.9e-21	toxin	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0116824_40	UniRef90_A0A564U088	137.0	2.09004e-41	YcfA-like protein	N/A
eggNOG-mapper	UHGV-0116824_40	1235792.C808_03054	112.0	4.17e-32	HicA toxin of bacterial toxin-antitoxin,	N/A
Pfam	UHGV-0116824_40	PF07927	N/A	N/A	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
COG	UHGV-0116824_40	COG1724	N/A	N/A	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family	N/A
structural_annotation	UHGV-0116824_40	PF07927,COG1724	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0116824_41	748224.HMPREF9436_01406	353.0	0	N/A	N/A