UHGV-0126009 (vOTU-004864)

Viral Genome: UHGV-0126009

Genome Information

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Overview
UHGV ID	UHGV-0126009
vOTU ID	vOTU-004864
Representative Genome?	Yes
Source	GPD
Original Genome ID	uvig_340074
Associated Biosample	SAMN02334126
Viral Genome Confidence	Confident

Quality Assessment
CheckV Method	DTR
CheckV Completeness	100 (Complete)
Trimmed?	No
CheckV Viral Markers	19
CheckV Host Markers	1
Recoded?	No

Viral Content
geNomad score	0.9768
Viral Hallmark Genes (geNomad)	6
Plasmid Hallmark Genes (geNomad)	0
ViralVerify Prediction	Virus
ViralVerify Score	32.35
Jumbo Phage?	No

Genome Content
Length (bps)	42,400
GC Content	42.02%
Genetic Code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS Genes	74
CDS Density	94%
Average CDS Length (bps)	539.35
Total tRNA Genes	1
Suppressor tRNA Genes	0

Genome Content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0126009_1	phrog_4433	71.1	1.8e-20	N/A	unknown function
eggNOG-mapper	UHGV-0126009_1	610130.Closa_1107	50.4	0.00000987	regulation of DNA-templated transcription, elongation	N/A
COG	UHGV-0126009_1	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
PHROG	UHGV-0126009_2	phrog_7370	72.9	3.4e-21	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0126009_2	UniRef90_A0A498CPV0	139.0	7.89996e-41	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0126009_2	358681.BBR47_35660	50.8	0.00000139	HNH endonuclease	N/A
Pfam	UHGV-0126009_2	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0126009_2	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-0126009_3	phrog_674	138.2	4.19969e-42	N/A	unknown function
UniRef90	UHGV-0126009_3	UniRef90_A0A6N7XHF2	173.0	0	N/A	N/A
eggNOG-mapper	UHGV-0126009_3	1095750.HMPREF9970_1676	139.0	1.8e-37	N/A	N/A
Pfam	UHGV-0126009_3	PF07083	N/A	N/A	N/A	DUF1351
structural_annotation	UHGV-0126009_3	PF07083	N/A	N/A	N/A	N/A
PHROG	UHGV-0126009_5	phrog_7838	161.8	0	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0126009_5	UniRef90_A0A8D9UGW3	203.0	0	DNA repair protein RAD52-like protein	N/A
eggNOG-mapper	UHGV-0126009_5	742767.HMPREF9456_02397	190.0	0	N/A	N/A
structural_annotation	UHGV-0126009_5	PF04098,TIGR00607,COG5055	N/A	N/A	N/A	N/A
PHROG	UHGV-0126009_7	phrog_2113	57.5	1.7e-16	N/A	unknown function
PHROG	UHGV-0126009_8	phrog_9804	129.5	2.4e-38	N/A	unknown function
UniRef90	UHGV-0126009_8	UniRef90_A0A174S716	159.0	0	Inhibitor_G39P domain-containing protein	N/A
eggNOG-mapper	UHGV-0126009_8	585394.RHOM_14005	117.0	6.01e-31	Loader and inhibitor of phage G40P	N/A
AcrCatalog	UHGV-0126009_8	cluster_137185	112.0	7.94e-34	NA	N/A
Pfam	UHGV-0126009_8	PF11417	N/A	N/A	Loader and inhibitor of phage G40P	Inhibitor_G39P
structural_annotation	UHGV-0126009_8	PF11417	N/A	N/A	N/A	N/A
PHROG	UHGV-0126009_9	phrog_2514	89.6	1.9e-26	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0126009_9	1415775.U729_2588	88.2	3.29e-18	DnaD domain protein	N/A
COG	UHGV-0126009_9	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0126009_9	PF09681,TIGR01714,COG0640	N/A	N/A	N/A	N/A
KOfam	UHGV-0126009_11	K08309	51.5	0.000000000000015	slt; soluble lytic murein transglycosylase [EC:4.2.2.-]	N/A
PHROG	UHGV-0126009_11	phrog_19349	150.2	9.80909e-45	N/A	unknown function
UniRef90	UHGV-0126009_11	UniRef90_UPI000DE563D6	140.0	8.83e-39	transglycosylase SLT domain-containing protein	N/A
eggNOG-mapper	UHGV-0126009_11	1120746.CCNL01000011_gene1661	124.0	6.51e-33	lytic transglycosylase activity	N/A
Pfam	UHGV-0126009_11	PF01464	N/A	N/A	Transglycosylase SLT domain	SLT
COG	UHGV-0126009_11	COG0741	N/A	N/A	Soluble lytic murein transglycosylase or regulatory protein s ( may contain LysM/invasin domain)	N/A
structural_annotation	UHGV-0126009_11	PF01464,MF_01616,NF011856,COG0741	N/A	N/A	N/A	N/A
PHROG	UHGV-0126009_12	phrog_989	80.9	8e-24	N/A	unknown function
UniRef90	UHGV-0126009_12	UniRef90_Q8SBM7	73.9	2.83e-16	Gp27 protein	N/A
eggNOG-mapper	UHGV-0126009_12	1540257.JQMW01000013_gene708	70.5	0.00000000000000112	N/A	N/A
PHROG	UHGV-0126009_13	phrog_8	46.1	0.0000000000012	transcriptional regulator	transcription regulation
UniRef90	UHGV-0126009_13	UniRef90_T5JYM7	50.8	0.00000195	Cro/Cl family transcriptional regulator	N/A
Pfam	UHGV-0126009_13	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
COG	UHGV-0126009_13	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0126009_13	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0126009_15	phrog_8	47.6	0.00000000000034	transcriptional regulator	transcription regulation
UniRef90	UHGV-0126009_15	UniRef90_UPI0019583BEF	67.8	0.00000000000834	helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-0126009_15	1121864.OMO_02129	57.4	0.00000000779	Helix-turn-helix XRE-family like proteins	N/A
COG	UHGV-0126009_15	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
COG	UHGV-0126009_17	COG2333	N/A	N/A	DNA uptake channel protein ComEC C-terminal domain, metallo-beta-lactamase superfamily	N/A
KOfam	UHGV-0126009_18	K14059	203.6	0	int; integrase	N/A
PHROG	UHGV-0126009_18	phrog_1	197.2	0	integrase	integration and excision
UniRef90	UHGV-0126009_18	UniRef90_A0A858BPV1	261.0	0	Site-specific integrase	N/A
eggNOG-mapper	UHGV-0126009_18	1123313.ATUT01000003_gene814	234.0	0	Phage integrase, N-terminal SAM-like domain	N/A
Pfam	UHGV-0126009_18	PF14657	N/A	N/A	Arm DNA-binding domain	Arm-DNA-bind_4
Pfam	UHGV-0126009_18	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-0126009_18	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0126009_18	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0126009_18	PF00589,MF_01808,TIGR02224,COG4974	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0126009_19	1408437.JNJN01000043_gene801	59.3	0.00000001	N/A	N/A
structural_annotation	UHGV-0126009_20	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-0126009_23	phrog_21718	56.2	6.1e-16	N/A	unknown function
eggNOG-mapper	UHGV-0126009_23	476272.RUMHYD_01768	66.6	0.00000000000257	N/A	N/A
UniRef90	UHGV-0126009_24	UniRef90_A0A350H2J1	49.3	0.00000384	HTH luxR-type domain-containing protein	N/A
structural_annotation	UHGV-0126009_24	PF13404,TIGR01636	N/A	N/A	N/A	N/A
KOfam	UHGV-0126009_25	K01448	112.2	6e-33	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0126009_25	phrog_435	168.4	0	endolysin	lysis
UniRef90	UHGV-0126009_25	UniRef90_B0MAM2	211.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-0126009_25	411490.ANACAC_00597	211.0	0	Cell wall hydrolase autolysin	N/A
Pfam	UHGV-0126009_25	PF01520	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_3
COG	UHGV-0126009_25	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0126009_25	PF01520,PF18342,MF_00417,TIGR02883,COG0860,COG4991	N/A	N/A	N/A	N/A
PHROG	UHGV-0126009_26	phrog_443	53.9	0.0000000000000052	holin	lysis
UniRef90	UHGV-0126009_26	UniRef90_A0A1I1Y2T2	89.7	2.43e-22	Phage r1t holin	N/A
eggNOG-mapper	UHGV-0126009_26	1469948.JPNB01000002_gene3855	86.3	9.62e-22	Putative lactococcus lactis phage r1t holin	N/A
Pfam	UHGV-0126009_26	PF16945	N/A	N/A	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
structural_annotation	UHGV-0126009_26	PF16945	N/A	N/A	N/A	N/A
PHROG	UHGV-0126009_27	phrog_4105	80.0	2.3e-23	N/A	unknown function
UniRef90	UHGV-0126009_27	UniRef90_A0A8D9UHA9	67.8	0.00000000000153	Holin protein	N/A
eggNOG-mapper	UHGV-0126009_27	428125.CLOLEP_01431	76.3	1.63e-16	N/A	N/A
UniRef90	UHGV-0126009_28	UniRef90_A0A845QMU2	679.0	0	PBECR3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0126009_28	1408437.JNJN01000060_gene452	318.0	0	heme binding	N/A
COG	UHGV-0126009_28	COG0503	N/A	N/A	Adenine/guanine phosphoribosyltransferase or related PRPP-binding protein	N/A
NCBIFam	UHGV-0126009_34	NF040910.1	N/A	N/A	CD1375 family protein	N/A
structural_annotation	UHGV-0126009_34	NF040910	N/A	N/A	N/A	N/A
UniRef90	UHGV-0126009_36	UniRef90_UPI001AB049E6	139.0	7.83e-34	N/A	N/A
eggNOG-mapper	UHGV-0126009_36	693746.OBV_22720	172.0	0	cellulose 1,4-beta-cellobiosidase activity	N/A
Pfam	UHGV-0126009_36	PF07523	N/A	N/A	Bacterial Ig-like domain (group 3)	Big_3
Pfam	UHGV-0126009_36	PF19789	N/A	N/A	N/A	DUF6273
COG	UHGV-0126009_36	COG3827	N/A	N/A	Cell pole-organizing protein PopZ	N/A
structural_annotation	UHGV-0126009_36	PF19789,PF14686,TIGR04183,COG2512	N/A	N/A	N/A	N/A
PHROG	UHGV-0126009_37	phrog_21765	46.4	0.00000000000058	N/A	unknown function
UniRef90	UHGV-0126009_37	UniRef90_A0A3R6GQJ1	62.8	0.000000871	Peptidase S74 domain-containing protein	N/A
eggNOG-mapper	UHGV-0126009_37	552398.HMPREF0866_01593	78.6	0.00000000000069	tail collar domain protein	N/A
COG	UHGV-0126009_37	COG4675	N/A	N/A	Phage tail collar domain	N/A
PHROG	UHGV-0126009_38	phrog_3287	99.0	3.7e-29	virion structural protein	head and packaging
eggNOG-mapper	UHGV-0126009_38	1232449.BAHV02000016_gene1816	280.0	0	N/A	N/A
structural_annotation	UHGV-0126009_38	PF11134,MF_01282,TIGR03300,COG5276	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0126009_40	PF07100,COG4288	N/A	N/A	N/A	N/A
PHROG	UHGV-0126009_41	phrog_267	100.6	1.7e-29	major head protein	head and packaging
UniRef90	UHGV-0126009_41	UniRef90_A0A4R3KBP0	152.0	2.67998e-41	N4-gp56 family major capsid protein	N/A
eggNOG-mapper	UHGV-0126009_41	665956.HMPREF1032_03906	250.0	0	P22 coat protein-protein 5 domain protein	N/A
structural_annotation	UHGV-0126009_41	PF19821,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0126009_43	phrog_156	100.9	7.6e-31	portal protein	head and packaging
eggNOG-mapper	UHGV-0126009_43	1232449.BAHV02000016_gene1822	400.0	0	N/A	N/A
structural_annotation	UHGV-0126009_43	PF16510,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0126009_45	phrog_38	347.9	0	terminase large subunit	head and packaging
UniRef90	UHGV-0126009_45	UniRef90_A0A845QMQ7	592.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0126009_45	755731.Clo1100_2438	444.0	0	TIGRFAM Phage	N/A
Pfam	UHGV-0126009_45	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
Pfam	UHGV-0126009_45	PF17289	N/A	N/A	Terminase RNaseH-like domain	Terminase_6C
NCBIFam	UHGV-0126009_45	TIGR01630.1	N/A	N/A	phage terminase large subunit	N/A
COG	UHGV-0126009_45	COG5362	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0126009_45	PF17289,PF05876,MF_04147,NF033889,COG5362,COG5410	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0126009_46	PF16677	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0126009_48	PF09392	N/A	N/A	N/A	N/A
UniRef90	UHGV-0126009_49	UniRef90_A0A5H1ZR47	96.7	5e-22	AcrVA1	N/A
PHROG	UHGV-0126009_51	phrog_36	53.3	0.0000000000000056	transcriptional regulator	transcription regulation
structural_annotation	UHGV-0126009_51	PF05263,TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-0126009_53	phrog_1770	108.7	4.9e-32	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0126009_53	UniRef90_A0A7V8QMV9	89.7	6.57e-20	Crossover junction endodeoxyribonuclease RuvC	N/A
eggNOG-mapper	UHGV-0126009_53	1115515.EV102420_06_00190	79.3	1.05e-16	Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group	N/A
COG	UHGV-0126009_53	COG0817	N/A	N/A	Holliday junction resolvasome RuvABC endonuclease subunit RuvC	N/A
structural_annotation	UHGV-0126009_53	PF16921,MF_00034,NF000711,COG0817	N/A	N/A	N/A	N/A
Pfam	UHGV-0126009_54	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
eggNOG-mapper	UHGV-0126009_58	1443122.Z958_05695	56.6	0.00000000934	N/A	N/A
PHROG	UHGV-0126009_60	phrog_21026	46.1	0.00000000000083	N/A	unknown function
PHROG	UHGV-0126009_66	phrog_1374	44.8	0.0000000000016	N/A	unknown function
PHROG	UHGV-0126009_69	phrog_59	96.9	1.6e-28	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0126009_69	UniRef90_A0A494RHV8	131.0	1.71e-35	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0126009_69	396513.SCA_0476	120.0	5.89e-32	HNH endonuclease	N/A
PADLOC	UHGV-0126009_69	HEase_00016	50.0	0.000000000000014	homing endonuclease	RM
Pfam	UHGV-0126009_69	PF07463	N/A	N/A	NUMOD4 motif	NUMOD4
structural_annotation	UHGV-0126009_69	PF13392,PF20987	N/A	N/A	N/A	N/A
KOfam	UHGV-0126009_70	K03111	135.5	6.4e-40	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0126009_70	phrog_44	128.6	5.3e-38	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0126009_70	UniRef90_A0A645FRU2	171.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0126009_70	1321814.HMPREF9089_01469	166.0	0	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-0126009_70	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0126009_70	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0126009_70	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0126009_70	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0126009_70	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0126009_71	phrog_25385	54.5	0.0000000000000019	N/A	unknown function
eggNOG-mapper	UHGV-0126009_71	718252.FP2_16450	53.9	0.0000000995	N/A	N/A
PHROG	UHGV-0126009_72	phrog_72	71.0	1.4e-20	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0126009_72	UniRef90_A0A8D9PDS2	123.0	2.2e-32	NinB protein	N/A
eggNOG-mapper	UHGV-0126009_72	1507.HMPREF0262_00432	117.0	8.68e-31	N/A	N/A
structural_annotation	UHGV-0126009_72	PF05772,NF007281	N/A	N/A	N/A	N/A
PHROG	UHGV-0126009_73	phrog_27197	53.9	0.0000000000000038	N/A	unknown function
eggNOG-mapper	UHGV-0126009_73	445970.ALIPUT_01592	80.5	5.73e-17	DNA-templated transcription, initiation	N/A
COG	UHGV-0126009_73	COG1595	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	N/A