UHGV-0127208 (vOTU-059844)

Viral Genome: UHGV-0127208

Genome Information

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Overview
UHGV ID	UHGV-0127208
vOTU ID	vOTU-059844
Representative Genome?	Yes
Source	GPD
Original Genome ID	uvig_323640
Associated Biosample	N/A
Viral Genome Confidence	Confident

Quality Assessment
CheckV Method	AAI-based
CheckV Completeness	99.9 (High-quality)
Trimmed?	No
CheckV Viral Markers	23
CheckV Host Markers	1
Recoded?	No

Viral Content
geNomad score	0.9679
Viral Hallmark Genes (geNomad)	12
Plasmid Hallmark Genes (geNomad)	0
ViralVerify Prediction	Virus
ViralVerify Score	29.51
Jumbo Phage?	No

Genome Content
Length (bps)	38,120
GC Content	28.37%
Genetic Code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS Genes	68
CDS Density	91%
Average CDS Length (bps)	511.54
Total tRNA Genes	1
Suppressor tRNA Genes	0

Genome Content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0127208_1	K06400	248.3	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0127208_1	phrog_95	276.1	0	integrase	integration and excision
UniRef90	UHGV-0127208_1	UniRef90_R7FHL4	625.0	0	Phage site-specific recombinase	N/A
eggNOG-mapper	UHGV-0127208_1	525254.HMPREF0072_1329	216.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-0127208_1	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0127208_1	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-0127208_1	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0127208_1	PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A
KOfam	UHGV-0127208_3	K01356	140.9	1.6e-41	lexA; repressor LexA [EC:3.4.21.88]	N/A
PHROG	UHGV-0127208_3	phrog_4	111.4	1.1e-32	transcriptional repressor	transcription regulation
UniRef90	UHGV-0127208_3	UniRef90_R7F6V6	230.0	0	LexA repressor	N/A
eggNOG-mapper	UHGV-0127208_3	428125.CLOLEP_01832	129.0	3.76e-34	DNA-binding helix-turn-helix protein	N/A
Pfam	UHGV-0127208_3	PF00717	N/A	N/A	Peptidase S24-like	Peptidase_S24
COG	UHGV-0127208_3	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-0127208_3	PF00717,PF01381,MF_00015,TIGR00498,COG1974	N/A	N/A	N/A	N/A
UniRef90	UHGV-0127208_4	UniRef90_UPI001BD8247A	78.6	1.52e-17	N/A	N/A
eggNOG-mapper	UHGV-0127208_4	866775.HMPREF9243_0425	73.2	3.93e-16	N/A	N/A
Pfam	UHGV-0127208_4	PF05339	N/A	N/A	N/A	DUF739
COG	UHGV-0127208_4	COG3655	N/A	N/A	DNA-binding transcriptional regulator, XRE family	N/A
structural_annotation	UHGV-0127208_4	PF05339,NF002773,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0127208_11	phrog_124	74.4	1.9e-21	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0127208_11	UniRef90_A0A7X7HFU7	295.0	0	AAA family ATPase	N/A
Pfam	UHGV-0127208_11	PF13479	N/A	N/A	AAA domain	AAA_24
COG	UHGV-0127208_11	COG1100	N/A	N/A	GTPase SAR1 family domain	N/A
structural_annotation	UHGV-0127208_11	PF13479,MF_00348,TIGR01618,COG0468	N/A	N/A	N/A	N/A
PHROG	UHGV-0127208_12	phrog_7545	91.2	1.7e-27	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0127208_12	UniRef90_R7BGM2	147.0	9.75023e-42	Gp148	N/A
eggNOG-mapper	UHGV-0127208_12	552525.B5LPN5_9CAUD	83.6	1.4e-17	HNH endonuclease	N/A
Pfam	UHGV-0127208_12	PF13392	N/A	N/A	HNH endonuclease	HNH_3
structural_annotation	UHGV-0127208_12	PF13392,PF13384,TIGR04381,COG2771	N/A	N/A	N/A	N/A
PHROG	UHGV-0127208_13	phrog_72	63.7	1e-18	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0127208_13	UniRef90_A0A8D9PDS2	103.0	8.8e-25	NinB protein	N/A
eggNOG-mapper	UHGV-0127208_13	445972.ANACOL_01825	98.6	1.68e-23	N/A	N/A
structural_annotation	UHGV-0127208_13	PF05772,NF007281	N/A	N/A	N/A	N/A
PHROG	UHGV-0127208_15	phrog_7566	46.5	0.00000000000058	N/A	unknown function
eggNOG-mapper	UHGV-0127208_15	1118057.CAGX01000020_gene1648	49.7	0.00000032	N/A	N/A
PHROG	UHGV-0127208_16	phrog_8489	250.3	0	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0127208_16	UniRef90_UPI001D0B3316	227.0	0	replisome organizer	N/A
eggNOG-mapper	UHGV-0127208_16	1139219.I569_00860	199.0	0	DnaD domain protein	N/A
COG	UHGV-0127208_16	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0127208_16	PF09681,TIGR01714	N/A	N/A	N/A	N/A
PHROG	UHGV-0127208_17	phrog_2289	50.3	0.000000000000045	helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0127208_17	UniRef90_A0A315ZV02	54.3	0.00000021	Loader and inhibitor of G40P protein	N/A
structural_annotation	UHGV-0127208_17	PF11417	N/A	N/A	N/A	N/A
PHROG	UHGV-0127208_18	phrog_4973	52.5	0.0000000000000086	N/A	unknown function
UniRef90	UHGV-0127208_18	UniRef90_A0A843HM15	66.2	0.00000000000108	Helix-turn-helix domain-containing protein	N/A
Pfam	UHGV-0127208_18	PF14090	N/A	N/A	Helix-turn-helix domain	HTH_39
structural_annotation	UHGV-0127208_18	PF14090,NF008549,COG4738	N/A	N/A	N/A	N/A
PHROG	UHGV-0127208_19	phrog_34	46.6	0.00000000000079	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0127208_19	UniRef90_A0A6B9SRR2	120.0	1.41e-32	Endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0127208_19	525919.Apre_0813	104.0	2.38e-27	Endodeoxyribonuclease RusA	N/A
COG	UHGV-0127208_19	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0127208_19	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0127208_20	PF09630,MF_00273,NF001981,COG2157	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0127208_24	PF14001,MF_01194,TIGR03318,COG5475	N/A	N/A	N/A	N/A
PHROG	UHGV-0127208_26	phrog_36	58.7	1.3e-16	transcriptional regulator	transcription regulation
eggNOG-mapper	UHGV-0127208_26	1121871.AUAT01000030_gene1019	52.0	0.0000022	N/A	N/A
COG	UHGV-0127208_26	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-0127208_26	PF07374,NF008895	N/A	N/A	N/A	N/A
KOfam	UHGV-0127208_31	K07474	130.1	2.9e-38	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-0127208_31	phrog_51	131.1	7e-39	terminase small subunit	head and packaging
UniRef90	UHGV-0127208_31	UniRef90_R7ITW3	262.0	0	Phage terminase small subunit	N/A
eggNOG-mapper	UHGV-0127208_31	1304866.K413DRAFT_0812	160.0	0	Terminase small subunit	N/A
Pfam	UHGV-0127208_31	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-0127208_31	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0127208_31	PF03592,COG3728	N/A	N/A	N/A	N/A
PHROG	UHGV-0127208_32	phrog_2	62.3	1.3e-17	terminase large subunit	head and packaging
UniRef90	UHGV-0127208_32	UniRef90_A0A1Q6LGZ0	918.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0127208_32	552396.HMPREF0863_01628	540.0	0	Phage terminase, large subunit, PBSX family	N/A
COG	UHGV-0127208_32	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0127208_32	PF03237,PF17289,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0127208_33	phrog_1454	46.8	0.00000000000051	N/A	unknown function
PHROG	UHGV-0127208_34	phrog_533	232.1	0	portal protein	head and packaging
UniRef90	UHGV-0127208_34	UniRef90_R7FBF4	788.0	0	Putative phage minor capsid protein	N/A
eggNOG-mapper	UHGV-0127208_34	1294142.CINTURNW_1024	469.0	0	N/A	N/A
structural_annotation	UHGV-0127208_34	PF05133,MF_04120,TIGR01542,COG3567	N/A	N/A	N/A	N/A
PHROG	UHGV-0127208_35	phrog_581	219.7	0	minor head protein	head and packaging
UniRef90	UHGV-0127208_35	UniRef90_UPI001D086335	359.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-0127208_35	33035.JPJF01000093_gene2255	281.0	0	N/A	N/A
Pfam	UHGV-0127208_35	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
Pfam	UHGV-0127208_35	PF03496	N/A	N/A	ADP-ribosyltransferase exoenzyme	ADPrib_exo_Tox
COG	UHGV-0127208_35	COG5585	N/A	N/A	Putative phage head morphogenesis protein, F of phage Mu or gp7 of SPP1	N/A
structural_annotation	UHGV-0127208_35	PF06152,PF03496,NF041404	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0127208_37	PF01096,TIGR04165,COG3478	N/A	N/A	N/A	N/A
PHROG	UHGV-0127208_39	phrog_422	276.3	0	major head protein	head and packaging
UniRef90	UHGV-0127208_39	UniRef90_A0A1Q6LIQ2	592.0	0	Phage capsid protein	N/A
eggNOG-mapper	UHGV-0127208_39	663278.Ethha_1589	407.0	0	N/A	N/A
structural_annotation	UHGV-0127208_39	PF19821,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0127208_41	phrog_541	64.4	1.9e-18	head-tail adaptor	connector
eggNOG-mapper	UHGV-0127208_41	552396.HMPREF0863_01637	59.7	0.000000000896	N/A	N/A
PHROG	UHGV-0127208_42	phrog_8710	105.4	3.3e-31	N/A	unknown function
eggNOG-mapper	UHGV-0127208_42	1151292.QEW_2430	80.1	5.35e-18	N/A	N/A
structural_annotation	UHGV-0127208_42	PF10665,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0127208_43	phrog_556	54.9	0.0000000000000016	minor head protein	head and packaging
eggNOG-mapper	UHGV-0127208_43	585501.HMPREF6123_0831	103.0	6.49e-27	N/A	N/A
PHROG	UHGV-0127208_44	phrog_2595	62.4	6.9e-18	head-tail connector protein	connector
eggNOG-mapper	UHGV-0127208_44	1151292.QEW_2427	70.5	0.000000000000112	N/A	N/A
Pfam	UHGV-0127208_44	PF12691	N/A	N/A	Bacteriophage minor capsid protein	Minor_capsid_3
structural_annotation	UHGV-0127208_44	PF12691,COG5003	N/A	N/A	N/A	N/A
PHROG	UHGV-0127208_45	phrog_820	113.1	1.5e-33	major tail protein	tail
eggNOG-mapper	UHGV-0127208_45	33035.JPJF01000093_gene2246	205.0	0	N/A	N/A
structural_annotation	UHGV-0127208_45	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0127208_46	phrog_8300	55.7	9e-16	N/A	unknown function
eggNOG-mapper	UHGV-0127208_46	1151292.QEW_2425	60.5	0.000000000162	N/A	N/A
structural_annotation	UHGV-0127208_46	PF06896	N/A	N/A	N/A	N/A
PHROG	UHGV-0127208_47	phrog_8355	105.8	1e-31	N/A	unknown function
UniRef90	UHGV-0127208_47	UniRef90_UPI001D0309B6	119.0	1.76e-32	bacteriophage Gp15 family protein	N/A
eggNOG-mapper	UHGV-0127208_47	1415775.U729_2613	107.0	1.96e-28	N/A	N/A
Pfam	UHGV-0127208_47	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0127208_47	PF06854	N/A	N/A	N/A	N/A
UniRef90	UHGV-0127208_48	UniRef90_R7F982	63.9	0.00000000000137	Conserved domain protein	N/A
eggNOG-mapper	UHGV-0127208_48	1540257.JQMW01000013_gene732	55.5	0.000000000513	Mu-like prophage protein Com	N/A
structural_annotation	UHGV-0127208_48	PF10122,COG4416	N/A	N/A	N/A	N/A
PHROG	UHGV-0127208_49	phrog_1535	476.0	0	tail length tape measure protein	tail
UniRef90	UHGV-0127208_49	UniRef90_A0A174SV65	554.0	0	Phage-like protein	N/A
eggNOG-mapper	UHGV-0127208_49	33035.JPJF01000093_gene2243	575.0	0	phage tail tape measure protein	N/A
COG	UHGV-0127208_49	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-0127208_49	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0127208_50	phrog_1194	113.9	7.7e-34	N/A	unknown function
UniRef90	UHGV-0127208_50	UniRef90_R7F8R7	176.0	0	Putative phage protein	N/A
eggNOG-mapper	UHGV-0127208_50	1122918.KB907248_gene4488	113.0	9.18e-31	N/A	N/A
Pfam	UHGV-0127208_50	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-0127208_50	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0127208_51	phrog_6616	141.0	4.30199e-43	tail protein	tail
UniRef90	UHGV-0127208_51	UniRef90_R7F857	585.0	0	Phage minor structural protein	N/A
eggNOG-mapper	UHGV-0127208_51	1294142.CINTURNW_1706	100.0	1.18e-18	Phage minor structural protein	N/A
COG	UHGV-0127208_51	COG4926	N/A	N/A	Phage-related protein	N/A
PHROG	UHGV-0127208_52	phrog_9116	149.7	1.54143e-44	tail protein	tail
UniRef90	UHGV-0127208_52	UniRef90_A0A3D1PJI0	224.0	0	Collar domain-containing protein	N/A
eggNOG-mapper	UHGV-0127208_52	694427.Palpr_1970	140.0	1.87e-32	tail collar domain protein	N/A
Pfam	UHGV-0127208_52	PF07484	N/A	N/A	Phage Tail Collar Domain	Collar
COG	UHGV-0127208_52	COG4675	N/A	N/A	Phage tail collar domain	N/A
PHROG	UHGV-0127208_55	phrog_2310	49.8	0.000000000000032	N/A	unknown function
eggNOG-mapper	UHGV-0127208_55	632245.CLP_2682	49.7	0.000000272	N/A	N/A
structural_annotation	UHGV-0127208_57	PF16938	N/A	N/A	N/A	N/A
KOfam	UHGV-0127208_58	K01447	119.6	3.3e-35	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0127208_58	phrog_1493	132.9	2.3e-39	endolysin	lysis
UniRef90	UHGV-0127208_58	UniRef90_R5YUL1	505.0	0	N-acetylmuramoyl-L-alanine amidase cwlL (Cellwall hydrolase) (Autolysin)	N/A
eggNOG-mapper	UHGV-0127208_58	1120998.AUFC01000016_gene8	160.0	2.8026e-45	Ami_2	N/A
Pfam	UHGV-0127208_58	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
Pfam	UHGV-0127208_58	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-0127208_58	COG5632	N/A	N/A	N-acetylmuramoyl-L-alanine amidase CwlA	N/A
structural_annotation	UHGV-0127208_58	PF01510,PF01471,MF_04111,NF008758,COG5632,COG3409	N/A	N/A	N/A	N/A
PHROG	UHGV-0127208_59	phrog_374	71.7	4.1e-36	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0127208_59	UniRef90_UPI00026C8333	127.0	4.36e-34	AP2 domain-containing protein	N/A
eggNOG-mapper	UHGV-0127208_59	1196324.A374_08819	105.0	1.5e-26	N/A	N/A
structural_annotation	UHGV-0127208_59	PF00847	N/A	N/A	N/A	N/A
PHROG	UHGV-0127208_60	phrog_2329	43.4	0.0000000000034	N/A	unknown function
PHROG	UHGV-0127208_62	phrog_14664	53.1	0.0000000000000065	N/A	unknown function
structural_annotation	UHGV-0127208_62	PF00644,COG5654	N/A	N/A	N/A	N/A
KOfam	UHGV-0127208_64	K03071	49.5	0.000000000000073	secB; preprotein translocase subunit SecB	N/A
PHROG	UHGV-0127208_64	phrog_21664	82.7	4.7e-24	N/A	unknown function
UniRef90	UHGV-0127208_64	UniRef90_UPI0009A5B667	116.0	1.36e-30	protein-export chaperone SecB	N/A
eggNOG-mapper	UHGV-0127208_64	86416.Clopa_1799	110.0	4.01e-29	Preprotein translocase subunit SecB	N/A
Pfam	UHGV-0127208_64	PF02556	N/A	N/A	Preprotein translocase subunit SecB	SecB
COG	UHGV-0127208_64	COG1952	N/A	N/A	Preprotein translocase subunit SecB	N/A
structural_annotation	UHGV-0127208_64	PF02556,MF_00821,NF004394,COG1952	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0127208_65	PF02583,COG1937	N/A	N/A	N/A	N/A
KOfam	UHGV-0127208_66	K22299	55.1	0.0000000000000017	rghR; HTH-type transcriptional regulator, competence development regulator	N/A
PHROG	UHGV-0127208_66	phrog_3	49.0	0.00000000000027	transcriptional repressor	transcription regulation
UniRef90	UHGV-0127208_66	UniRef90_R5Z201	91.7	6.93e-23	Transcriptional regulator	N/A
eggNOG-mapper	UHGV-0127208_66	521460.Athe_2435	51.6	0.000000131	PFAM helix-turn-helix domain protein	N/A
PADLOC	UHGV-0127208_66	retron_type_VI_hth_cluster2_1	51.7	0.000000000000028	N/A	Retron
Pfam	UHGV-0127208_66	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0127208_66	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0127208_66	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
Pfam	UHGV-0127208_67	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-0127208_67	PF01381,NF010465,COG1476	N/A	N/A	N/A	N/A