UHGV-0129359 (vOTU-021628)

Viral Genome: UHGV-0129359

Genome Information

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Overview
UHGV ID	UHGV-0129359
vOTU ID	vOTU-021628
Representative Genome?	Yes
Source	GPD
Original Genome ID	uvig_331191
Associated Biosample	SAMN00792111
Viral Genome Confidence	Confident

Quality Assessment
CheckV Method	AAI-based
CheckV Completeness	65.33 (Medium-quality)
Trimmed?	No
CheckV Viral Markers	16
CheckV Host Markers	0
Recoded?	No

Viral Content
geNomad score	0.9819
Viral Hallmark Genes (geNomad)	9
Plasmid Hallmark Genes (geNomad)	0
ViralVerify Prediction	Virus
ViralVerify Score	44.56
Jumbo Phage?	No

Genome Content
Length (bps)	27,813
GC Content	50.61%
Genetic Code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS Genes	52
CDS Density	91%
Average CDS Length (bps)	484.10
Total tRNA Genes	1
Suppressor tRNA Genes	0

Genome Content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 65.33)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0129359_1	K14059	206.9	0	int; integrase	N/A
PHROG	UHGV-0129359_1	phrog_1	181.6	0	integrase	integration and excision
UniRef90	UHGV-0129359_1	UniRef90_U2QJL8	619.0	0	Site-specific recombinase, phage integrase family	N/A
eggNOG-mapper	UHGV-0129359_1	1226322.HMPREF1545_00144	619.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0129359_1	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0129359_1	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0129359_1	PF00589,PF12167,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-0129359_2	phrog_33872	50.5	0.000000000000021	N/A	unknown function
eggNOG-mapper	UHGV-0129359_3	1298920.KI911353_gene413	166.0	0	N/A	N/A
KOfam	UHGV-0129359_4	K19370	40.2	0.000000000033	DNAJC22; DnaJ homolog subfamily C member 22	N/A
PHROG	UHGV-0129359_4	phrog_10292	64.9	9.7e-19	N/A	unknown function
UniRef90	UHGV-0129359_4	UniRef90_A0A1Q6KIC5	145.0	1.63952e-42	TM2 domain-containing protein	N/A
eggNOG-mapper	UHGV-0129359_4	665956.HMPREF1032_00562	133.0	1.36e-38	TM2 domain	N/A
Pfam	UHGV-0129359_4	PF05154	N/A	N/A	TM2 domain	TM2
COG	UHGV-0129359_4	COG2314	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0129359_4	PF05154,PF12773,MF_00788,NF003161	N/A	N/A	N/A	N/A
PHROG	UHGV-0129359_5	phrog_1914	109.9	2.5e-32	N/A	unknown function
UniRef90	UHGV-0129359_5	UniRef90_G9YPL5	219.0	0	Peptidase_M78 domain-containing protein	N/A
eggNOG-mapper	UHGV-0129359_5	936572.HMPREF1148_0685	87.8	9.26e-18	N/A	N/A
Pfam	UHGV-0129359_5	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-0129359_5	COG1592	N/A	N/A	Rubrerythrin	N/A
structural_annotation	UHGV-0129359_5	PF06114,COG2856	N/A	N/A	N/A	N/A
UniRef90	UHGV-0129359_6	UniRef90_UPI00115ECC35	88.2	4.92e-20	helix-turn-helix domain-containing protein	N/A
COG	UHGV-0129359_6	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
PHROG	UHGV-0129359_7	phrog_8	50.2	0.000000000000066	transcriptional regulator	transcription regulation
UniRef90	UHGV-0129359_7	UniRef90_A0A412EXN2	79.0	4.49e-18	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0129359_7	665950.HMPREF1025_02561	67.8	0.0000000000000175	sequence-specific DNA binding	N/A
Pfam	UHGV-0129359_7	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
COG	UHGV-0129359_7	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0129359_7	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0129359_9	PF13560,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-0129359_11	phrog_25245	75.6	5.7e-22	N/A	unknown function
UniRef90	UHGV-0129359_11	UniRef90_A0A1C5W8M4	329.0	0	Cell wall-binding protein yocH	N/A
eggNOG-mapper	UHGV-0129359_11	1226322.HMPREF1545_00012	299.0	0	3D domain	N/A
Pfam	UHGV-0129359_11	PF06725	N/A	N/A	3D domain	3D
COG	UHGV-0129359_11	COG3584	N/A	N/A	3D (Asp-Asp-Asp) domain, usually in lytic transglycosylases	N/A
structural_annotation	UHGV-0129359_11	PF06725,MF_02071,NF040670,COG3584	N/A	N/A	N/A	N/A
PHROG	UHGV-0129359_13	phrog_674	167.4	0	N/A	unknown function
UniRef90	UHGV-0129359_13	UniRef90_A0A847VXN8	164.0	0	N/A	N/A
eggNOG-mapper	UHGV-0129359_13	641112.ACOK01000103_gene524	152.0	4.37205e-43	N/A	N/A
Pfam	UHGV-0129359_13	PF07083	N/A	N/A	N/A	DUF1351
structural_annotation	UHGV-0129359_13	PF07083	N/A	N/A	N/A	N/A
PHROG	UHGV-0129359_14	phrog_3657	330.1	0	N/A	unknown function
UniRef90	UHGV-0129359_14	UniRef90_UPI001DC4E782	284.0	0	PD-(D/E)XK nuclease-like domain-containing protein	N/A
eggNOG-mapper	UHGV-0129359_14	1567011.A0A0A7RUE9_9VIRU	298.0	0	N/A	N/A
PHROG	UHGV-0129359_15	phrog_392	103.6	2.7e-30	metal-dependent hydrolase	other
UniRef90	UHGV-0129359_15	UniRef90_G9YN42	399.0	0	Metallo-beta-lactamase domain protein	N/A
eggNOG-mapper	UHGV-0129359_15	665956.HMPREF1032_03101	192.0	0	May be involved in the transport of PQQ or its precursor to the periplasm	N/A
Pfam	UHGV-0129359_15	PF12706	N/A	N/A	Beta-lactamase superfamily domain	Lactamase_B_2
COG	UHGV-0129359_15	COG1235	N/A	N/A	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	N/A
structural_annotation	UHGV-0129359_15	PF12706,MF_01818,TIGR03307,COG1234	N/A	N/A	N/A	N/A
PHROG	UHGV-0129359_16	phrog_15768	142.4	9.80909e-45	N/A	unknown function
UniRef90	UHGV-0129359_16	UniRef90_A0A4D7AS84	375.0	0	N/A	N/A
eggNOG-mapper	UHGV-0129359_16	203119.Cthe_2466	93.2	9.92e-20	N/A	N/A
AcrCatalog	UHGV-0129359_16	cluster_38323	120.0	1.45e-35	NA	N/A
Pfam	UHGV-0129359_16	PF19808	N/A	N/A	N/A	DUF6291
structural_annotation	UHGV-0129359_16	PF19808	N/A	N/A	N/A	N/A
PHROG	UHGV-0129359_17	phrog_244	65.9	9.1e-19	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0129359_17	UniRef90_A0A841R0Q1	157.0	0	Holliday junction resolvase	N/A
eggNOG-mapper	UHGV-0129359_17	1123250.KB908417_gene653	137.0	1.32e-40	N/A	N/A
structural_annotation	UHGV-0129359_17	PF01870,MF_01490,NF040854,COG1591	N/A	N/A	N/A	N/A
UniRef90	UHGV-0129359_18	UniRef90_A0A4D7ATA9	217.0	0	Helix-turn-helix domain-containing protein	N/A
Pfam	UHGV-0129359_18	PF13384	N/A	N/A	Homeodomain-like domain	HTH_23
structural_annotation	UHGV-0129359_18	PF04936,NF033558	N/A	N/A	N/A	N/A
PHROG	UHGV-0129359_19	phrog_424	98.6	7.8e-29	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0129359_19	UniRef90_A0A4D7B2Q5	510.0	0	Phosphoadenosine phosphosulfate reductase	N/A
eggNOG-mapper	UHGV-0129359_19	411467.BACCAP_03937	246.0	0	COG COG0175 3-phosphoadenosine 5-phosphosulfate sulfotransferase (PAPS reductase) FAD synthetase and related enzymes	N/A
COG	UHGV-0129359_19	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-0129359_19	PF01507,MF_00064,NF006327,COG0175	N/A	N/A	N/A	N/A
PHROG	UHGV-0129359_20	phrog_599	43.8	0.0000000000048	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0129359_20	UniRef90_A0A4D7ANR2	168.0	0	Lar family restriction alleviation protein	N/A
eggNOG-mapper	UHGV-0129359_20	742738.HMPREF9460_04054	71.6	0.00000000000000453	Restriction alleviation protein Lar	N/A
Pfam	UHGV-0129359_20	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
structural_annotation	UHGV-0129359_20	PF14354,TIGR03655	N/A	N/A	N/A	N/A
PHROG	UHGV-0129359_21	phrog_799	150.9	8.40779e-45	DNA methyltransferase	other
UniRef90	UHGV-0129359_21	UniRef90_UPI000AAF359D	209.0	0	SAM-dependent DNA methyltransferase	N/A
eggNOG-mapper	UHGV-0129359_21	1519439.JPJG01000060_gene1874	209.0	0	site-specific DNA-methyltransferase (adenine-specific) activity	N/A
COG	UHGV-0129359_21	COG0286	N/A	N/A	Type I restriction-modification system, DNA methylase subunit	N/A
structural_annotation	UHGV-0129359_21	PF05869,MF_01872,NF000058,COG4123	N/A	N/A	N/A	N/A
PHROG	UHGV-0129359_23	phrog_10714	71.0	1.3e-20	N/A	unknown function
UniRef90	UHGV-0129359_23	UniRef90_UPI001C3A10B1	62.8	0.000000000353	Zinc ribbon domain-containing protein	N/A
eggNOG-mapper	UHGV-0129359_23	1226322.HMPREF1545_00023	178.0	0	N/A	N/A
PHROG	UHGV-0129359_25	phrog_25732	100.7	8.1e-30	N/A	unknown function
structural_annotation	UHGV-0129359_25	NF011227	N/A	N/A	N/A	N/A
PHROG	UHGV-0129359_27	phrog_37865	62.5	1.3e-20	N/A	unknown function
PHROG	UHGV-0129359_29	phrog_38832	190.9	0	N/A	unknown function
eggNOG-mapper	UHGV-0129359_29	665956.HMPREF1032_03087	120.0	5.43e-33	N/A	N/A
PHROG	UHGV-0129359_30	phrog_599	52.5	0.000000000000012	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0129359_30	UniRef90_A0A2X2BKI2	49.3	0.00000213	Restriction alleviation protein, Lar family	N/A
Pfam	UHGV-0129359_30	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
NCBIFam	UHGV-0129359_30	TIGR03655.1	N/A	N/A	Lar family restriction alleviation protein	N/A
dbAPIS	UHGV-0129359_30	APIS033	N/A	N/A	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	N/A
structural_annotation	UHGV-0129359_30	PF14354,NF007260	N/A	N/A	N/A	N/A
PHROG	UHGV-0129359_34	phrog_8684	78.6	3.5e-25	N/A	unknown function
UniRef90	UHGV-0129359_34	UniRef90_UPI001D00D0A2	194.0	0	YopX family protein	N/A
eggNOG-mapper	UHGV-0129359_34	1300150.EMQU_2285	113.0	1.16e-30	YopX protein	N/A
Pfam	UHGV-0129359_34	PF09643	N/A	N/A	YopX protein	YopX
structural_annotation	UHGV-0129359_34	PF09643,TIGR01671	N/A	N/A	N/A	N/A
KOfam	UHGV-0129359_36	K22299	54.8	0.0000000000000026	rghR; HTH-type transcriptional regulator, competence development regulator	N/A
PHROG	UHGV-0129359_36	phrog_8	72.6	7.9e-21	transcriptional regulator	transcription regulation
UniRef90	UHGV-0129359_36	UniRef90_A0A4D7AHN1	161.0	0	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0129359_36	1226322.HMPREF1545_00039	79.3	1.39e-18	sequence-specific DNA binding	N/A
Pfam	UHGV-0129359_36	PF13560	N/A	N/A	Helix-turn-helix domain	HTH_31
COG	UHGV-0129359_36	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0129359_36	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0129359_37	phrog_130	155.7	0	anti-repressor Ant	transcription regulation
UniRef90	UHGV-0129359_37	UniRef90_A0A1V0QCE9	269.0	0	Bro-N domain-containing protein	N/A
eggNOG-mapper	UHGV-0129359_37	658086.HMPREF0994_06321	189.0	0	Phage antirepressor protein KilAC domain	N/A
Pfam	UHGV-0129359_37	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
COG	UHGV-0129359_37	COG3617	N/A	N/A	Prophage antirepressor	N/A
structural_annotation	UHGV-0129359_37	PF02498,TIGR02681,COG3617	N/A	N/A	N/A	N/A
UniRef90	UHGV-0129359_38	UniRef90_A0A8D9PDT2	163.0	0	Brinker DNA-binding domain protein	N/A
eggNOG-mapper	UHGV-0129359_38	1226322.HMPREF1545_00042	154.0	0	N/A	N/A
structural_annotation	UHGV-0129359_38	PF13542	N/A	N/A	N/A	N/A
KOfam	UHGV-0129359_39	K06909	377.9	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0129359_39	phrog_5653	159.2	0	terminase large subunit	head and packaging
UniRef90	UHGV-0129359_39	UniRef90_A0A2U1BEH4	779.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0129359_39	33035.JPJF01000106_gene3136	474.0	0	Terminase small subunit	N/A
Pfam	UHGV-0129359_39	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-0129359_39	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-0129359_39	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0129359_39	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0129359_39	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0129359_40	phrog_533	425.2	0	portal protein	head and packaging
UniRef90	UHGV-0129359_40	UniRef90_U2R2D2	908.0	0	Putative phage minor capsid protein	N/A
eggNOG-mapper	UHGV-0129359_40	1226322.HMPREF1545_00044	908.0	0	N/A	N/A
Pfam	UHGV-0129359_40	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0129359_40	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0129359_42	phrog_581	304.2	0	minor head protein	head and packaging
UniRef90	UHGV-0129359_42	UniRef90_UPI001D080D49	693.0	0	phage minor capsid protein	N/A
eggNOG-mapper	UHGV-0129359_42	1226322.HMPREF1545_00046	665.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-0129359_42	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0129359_42	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0129359_42	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-0129359_44	phrog_2303	59.5	6.1e-17	head scaffolding protein	head and packaging
eggNOG-mapper	UHGV-0129359_44	1226322.HMPREF1545_00049	275.0	0	N/A	N/A
AcrCatalog	UHGV-0129359_44	cluster_74817	52.4	0.0000000000865	NA	N/A
PHROG	UHGV-0129359_45	phrog_10	173.5	0	major head protein	head and packaging
UniRef90	UHGV-0129359_45	UniRef90_A0A2U1BEF2	705.0	0	HK97 family phage major capsid protein	N/A
eggNOG-mapper	UHGV-0129359_45	1226322.HMPREF1545_00050	599.0	0	Phage capsid family	N/A
Pfam	UHGV-0129359_45	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0129359_45	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0129359_45	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0129359_45	PF05065,PF13620,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0129359_46	phrog_541	118.4	3.4e-35	head-tail adaptor	connector
eggNOG-mapper	UHGV-0129359_46	1120998.AUFC01000030_gene2237	66.6	0.00000000000344	N/A	N/A
PHROG	UHGV-0129359_47	phrog_3366	117.0	1.2e-34	N/A	unknown function
eggNOG-mapper	UHGV-0129359_47	1226322.HMPREF1545_00053	289.0	0	N/A	N/A
structural_annotation	UHGV-0129359_47	PF20536,TIGR01563	N/A	N/A	N/A	N/A
PHROG	UHGV-0129359_48	phrog_556	71.2	1.4e-20	minor head protein	head and packaging
UniRef90	UHGV-0129359_48	UniRef90_UPI00189F11C5	172.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-0129359_48	1226322.HMPREF1545_00054	271.0	0	Minor capsid protein	N/A
Pfam	UHGV-0129359_48	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0129359_48	PF11114,TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-0129359_49	phrog_3266	51.4	0.000000000000018	tail completion	connector
eggNOG-mapper	UHGV-0129359_49	1226322.HMPREF1545_00055	277.0	0	N/A	N/A
structural_annotation	UHGV-0129359_49	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-0129359_50	phrog_3099	106.6	2.4e-31	N/A	unknown function
eggNOG-mapper	UHGV-0129359_50	1226322.HMPREF1545_00056	341.0	0	N/A	N/A
structural_annotation	UHGV-0129359_50	TIGR02126	N/A	N/A	N/A	N/A
PHROG	UHGV-0129359_51	phrog_11299	162.0	0	N/A	unknown function
eggNOG-mapper	UHGV-0129359_51	1226322.HMPREF1545_00057	267.0	0	N/A	N/A
structural_annotation	UHGV-0129359_51	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-0129359_52	phrog_706	127.1	1.3e-37	N/A	unknown function
UniRef90	UHGV-0129359_52	UniRef90_UPI0018A0FACA	217.0	0	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-0129359_52	1226322.HMPREF1545_00058	366.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0129359_52	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0129359_52	PF06854	N/A	N/A	N/A	N/A