UHGV-0138694 (vOTU-061632)

Viral Genome: UHGV-0138694

Genome Information

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Overview
UHGV ID	UHGV-0138694
vOTU ID	vOTU-061632
Representative Genome?	Yes
Source	GPD
Original Genome ID	uvig_365405
Associated Biosample	SAMN03283291
Viral Genome Confidence	Confident

Quality Assessment
CheckV Method	AAI-based
CheckV Completeness	91.25 (High-quality)
Trimmed?	No
CheckV Viral Markers	16
CheckV Host Markers	1
Recoded?	No

Viral Content
geNomad score	0.9812
Viral Hallmark Genes (geNomad)	9
Plasmid Hallmark Genes (geNomad)	0
ViralVerify Prediction	Virus
ViralVerify Score	50.41
Jumbo Phage?	No

Genome Content
Length (bps)	36,462
GC Content	50.47%
Genetic Code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS Genes	52
CDS Density	95%
Average CDS Length (bps)	667.15
Total tRNA Genes	0
Suppressor tRNA Genes	0

Genome Content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 91.25)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
eggNOG-mapper	UHGV-0138694_3	1200557.JHWV01000006_gene1705	95.1	4.97e-20	Membrane	N/A
Pfam	UHGV-0138694_3	PF11133	N/A	N/A	Head fiber protein	Phage_head_fibr
COG	UHGV-0138694_3	COG3064	N/A	N/A	Membrane protein TolA involved in colicin uptake	N/A
eggNOG-mapper	UHGV-0138694_5	910314.HMPREF9220_1078	110.0	6.51e-30	N/A	N/A
structural_annotation	UHGV-0138694_5	PF16407,NF032891,COG5456	N/A	N/A	N/A	N/A
KOfam	UHGV-0138694_6	K07273	138.5	6.89999e-41	acm; lysozyme	N/A
PHROG	UHGV-0138694_6	phrog_291	117.1	2.1e-34	endolysin	lysis
UniRef90	UHGV-0138694_6	UniRef90_R6AN85	325.0	0	Lyzozyme M1 (1 4-beta-N-acetylmuramidase)	N/A
eggNOG-mapper	UHGV-0138694_6	1273103.NM10_01741	193.0	0	Glycosyl hydrolase family 25	N/A
Pfam	UHGV-0138694_6	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-0138694_6	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-0138694_6	PF01183,NF008377,COG3757	N/A	N/A	N/A	N/A
UniRef90	UHGV-0138694_8	UniRef90_R6AE25	174.0	0	Conserved domain protein	N/A
eggNOG-mapper	UHGV-0138694_8	592028.GCWU000321_01470	99.8	3.28e-24	Bacteriophage holin family	N/A
Pfam	UHGV-0138694_8	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
structural_annotation	UHGV-0138694_8	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
PHROG	UHGV-0138694_9	phrog_32639	44.5	0.0000000000038	N/A	unknown function
structural_annotation	UHGV-0138694_9	PF21611	N/A	N/A	N/A	N/A
KOfam	UHGV-0138694_10	K14059	158.5	0	int; integrase	N/A
PHROG	UHGV-0138694_10	phrog_1	188.0	0	integrase	integration and excision
UniRef90	UHGV-0138694_10	UniRef90_A0A3B9DV66	486.0	0	Recombinase XerC	N/A
eggNOG-mapper	UHGV-0138694_10	1273103.NM10_01678	362.0	0	Phage integrase family	N/A
Pfam	UHGV-0138694_10	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0138694_10	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0138694_10	PF00589,MF_01808,NF007246,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-0138694_11	phrog_2557	41.8	0.00000000001	virion structural protein	head and packaging
eggNOG-mapper	UHGV-0138694_11	742743.HMPREF9453_00547	84.0	0.00000000000000261	tail collar domain protein	N/A
COG	UHGV-0138694_11	COG4675	N/A	N/A	Phage tail collar domain	N/A
PHROG	UHGV-0138694_12	phrog_1101	369.6	0	tail protein	tail
UniRef90	UHGV-0138694_12	UniRef90_A0A3B9DV75	1802.0	0	Phage-tail_3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0138694_12	742743.HMPREF9453_00552	1526.0	0	Putative phage tail protein	N/A
Pfam	UHGV-0138694_12	PF13550	N/A	N/A	Putative phage tail protein	Phage-tail_3
COG	UHGV-0138694_12	COG4733	N/A	N/A	Phage-related protein, tail protein J	N/A
structural_annotation	UHGV-0138694_12	PF13550,NF040662,COG4733	N/A	N/A	N/A	N/A
KOfam	UHGV-0138694_13	K13695	65.7	9.2e-19	nlpC; probable lipoprotein NlpC	N/A
PHROG	UHGV-0138694_13	phrog_329	59.0	6e-17	minor tail protein	tail
UniRef90	UHGV-0138694_13	UniRef90_A0A3B9DUZ7	303.0	0	Hydrolase	N/A
eggNOG-mapper	UHGV-0138694_13	742743.HMPREF9453_00553	270.0	0	cysteine-type peptidase activity	N/A
Pfam	UHGV-0138694_13	PF00877	N/A	N/A	NlpC/P60 family	NLPC_P60
COG	UHGV-0138694_13	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
structural_annotation	UHGV-0138694_13	PF00877,TIGR02219,COG0791	N/A	N/A	N/A	N/A
PHROG	UHGV-0138694_14	phrog_778	53.2	0.0000000000000052	tail assembly protein	tail
UniRef90	UHGV-0138694_14	UniRef90_A0A3B9DWJ4	371.0	0	N/A	N/A
eggNOG-mapper	UHGV-0138694_14	742743.HMPREF9453_00554	295.0	0	N/A	N/A
Pfam	UHGV-0138694_14	PF09931	N/A	N/A	N/A	DUF2163
COG	UHGV-0138694_14	COG5449	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0138694_14	PF09931,TIGR01600,COG4672	N/A	N/A	N/A	N/A
PHROG	UHGV-0138694_15	phrog_2913	72.0	5.7e-21	glycoside hydrolase	other
UniRef90	UHGV-0138694_15	UniRef90_UPI000C7C1E73	117.0	1.21e-29	N/A	N/A
eggNOG-mapper	UHGV-0138694_15	592028.GCWU000321_01387	126.0	3.79e-34	N/A	N/A
Pfam	UHGV-0138694_15	PF09343	N/A	N/A	N/A	DUF2460
COG	UHGV-0138694_15	COG5448	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0138694_15	PF09343,TIGR02217,COG5448	N/A	N/A	N/A	N/A
PHROG	UHGV-0138694_16	phrog_12798	74.7	8.96831e-44	N/A	unknown function
UniRef90	UHGV-0138694_16	UniRef90_A0A3B9DV14	1513.0	0	TMP_3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0138694_16	1000569.HMPREF1040_0188	614.0	0	tape measure	N/A
Pfam	UHGV-0138694_16	PF20155	N/A	N/A	Tape measure protein	TMP_3
NCBIFam	UHGV-0138694_16	TIGR02675.1	N/A	N/A	tape measure protein	N/A
COG	UHGV-0138694_16	COG0419	N/A	N/A	DNA repair exonuclease SbcCD ATPase subunit	N/A
structural_annotation	UHGV-0138694_16	PF20155,TIGR01760,NF033930,COG3941	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0138694_17	568816.Acin_1229	94.7	3.63e-24	N/A	N/A
structural_annotation	UHGV-0138694_18	PF11836	N/A	N/A	N/A	N/A
PHROG	UHGV-0138694_19	phrog_1407	103.5	1.6e-30	major tail protein	tail
UniRef90	UHGV-0138694_19	UniRef90_A0A3B9DV80	339.0	0	Phage major tail protein, TP901-1 family	N/A
eggNOG-mapper	UHGV-0138694_19	1000569.HMPREF1040_0191	211.0	0	Phage tail tube protein	N/A
Pfam	UHGV-0138694_19	PF06199	N/A	N/A	Phage tail tube protein	Phage_tail_2
NCBIFam	UHGV-0138694_19	TIGR02126.1	N/A	N/A	phage major tail protein, TP901-1 family	N/A
COG	UHGV-0138694_19	COG5437	N/A	N/A	Phage tail protein, TP901-1 family	N/A
structural_annotation	UHGV-0138694_19	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0138694_20	PF08873,COG5003	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0138694_21	1000569.HMPREF1040_0193	57.8	0.00000000693	N/A	N/A
UniRef90	UHGV-0138694_22	UniRef90_UPI0005090E80	59.3	0.0000000208	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0138694_22	983328.AFGH01000032_gene923	52.4	0.00000155	Phage virion morphogenesis	N/A
COG	UHGV-0138694_22	COG5005	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0138694_22	TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-0138694_23	phrog_212	284.6	0	major head protein	head and packaging
UniRef90	UHGV-0138694_23	UniRef90_A0A3B9DUZ1	585.0	0	Phage capsid protein	N/A
eggNOG-mapper	UHGV-0138694_23	1122918.KB907248_gene4499	375.0	0	N/A	N/A
structural_annotation	UHGV-0138694_23	PF05065,MF_04119,NF041162,COG4653	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0138694_24	706434.HMPREF9429_00526	133.0	3.28e-36	N/A	N/A
structural_annotation	UHGV-0138694_24	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0138694_25	phrog_29609	113.8	5.7e-34	N/A	unknown function
UniRef90	UHGV-0138694_25	UniRef90_R5BIR3	300.0	0	Ntox50 domain-containing protein	N/A
eggNOG-mapper	UHGV-0138694_25	706434.HMPREF9429_00528	286.0	0	N/A	N/A
Pfam	UHGV-0138694_25	PF18812	N/A	N/A	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease3	PBECR3
structural_annotation	UHGV-0138694_25	PF18451	N/A	N/A	N/A	N/A
PHROG	UHGV-0138694_26	phrog_145	202.0	0	portal protein	head and packaging
UniRef90	UHGV-0138694_26	UniRef90_F9MMJ7	302.0	0	Conserved domain protein	N/A
eggNOG-mapper	UHGV-0138694_26	706434.HMPREF9429_00529	456.0	0	N/A	N/A
structural_annotation	UHGV-0138694_26	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0138694_27	K06909	334.1	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0138694_27	phrog_3717	148.5	3.64338e-44	terminase large subunit	head and packaging
UniRef90	UHGV-0138694_27	UniRef90_A0A380NJL4	521.0	0	Phage terminase, large subunit, PBSX family	N/A
eggNOG-mapper	UHGV-0138694_27	742733.HMPREF9469_01827	429.0	0	Terminase RNAseH like domain	N/A
Pfam	UHGV-0138694_27	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-0138694_27	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
COG	UHGV-0138694_27	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0138694_27	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
KOfam	UHGV-0138694_29	K22226	88.6	8.5e-26	ahbC; Fe-coproporphyrin III synthase	N/A
PHROG	UHGV-0138694_29	phrog_21308	47.6	0.00000000000011	radical SAM domain-containing protein	other
UniRef90	UHGV-0138694_29	UniRef90_H3K6T6	343.0	0	Radical SAM core domain-containing protein	N/A
eggNOG-mapper	UHGV-0138694_29	411459.RUMOBE_01047	322.0	0	Radical SAM superfamily	N/A
Pfam	UHGV-0138694_29	PF04055	N/A	N/A	Radical SAM superfamily	Radical_SAM
COG	UHGV-0138694_29	COG0535	N/A	N/A	Radical SAM superfamily maturase, SkfB/NifB/PqqE family	N/A
structural_annotation	UHGV-0138694_29	PF00834,MF_00660,NF012164,COG0535	N/A	N/A	N/A	N/A
PHROG	UHGV-0138694_30	phrog_842	201.1	0	beta-glucosyl-HMC-alpha-glucosyltransferase	other
UniRef90	UHGV-0138694_30	UniRef90_A0A516LJ12	261.0	0	Putative beta-glucosyl-HMC-alpha-glucosyl-transferase	N/A
eggNOG-mapper	UHGV-0138694_30	508419.F8J156_9CAUD	218.0	0	N/A	N/A
Pfam	UHGV-0138694_30	PF20691	N/A	N/A	TET-Associated Glycosyltransferase	TAGT
structural_annotation	UHGV-0138694_30	PF20691,NF041865,COG1216	N/A	N/A	N/A	N/A
KOfam	UHGV-0138694_31	K03497	56.4	3.9e-16	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	N/A
PHROG	UHGV-0138694_31	phrog_620	162.8	0	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0138694_31	UniRef90_D6KP87	270.0	0	Prophage LambdaWp4, DNA methylase	N/A
eggNOG-mapper	UHGV-0138694_31	1416334.X2CXX2_9CAUD	257.0	0	N-methyltransferase activity	N/A
PADLOC	UHGV-0138694_31	MTase_II_00015	91.3	1.9e-26	Type II methyltransferase	RM
Pfam	UHGV-0138694_31	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
structural_annotation	UHGV-0138694_31	PF02195,TIGR00180,COG5119	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0138694_32	PF08281,TIGR01636,COG2739	N/A	N/A	N/A	N/A
KOfam	UHGV-0138694_35	K01160	61.4	2.4e-17	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0138694_35	phrog_140	111.7	5.4e-33	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0138694_35	UniRef90_R6AUC5	148.0	3.36031e-42	Crossover junction endodeoxyribonuclease RusA	N/A
eggNOG-mapper	UHGV-0138694_35	742823.HMPREF9465_00230	110.0	4.28e-28	Holliday junction resolvase	N/A
Pfam	UHGV-0138694_35	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0138694_35	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
KOfam	UHGV-0138694_38	K03111	134.8	1e-39	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0138694_38	phrog_44	118.5	1.2e-36	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0138694_38	UniRef90_R7CMF9	149.0	2.07953e-42	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0138694_38	592028.GCWU000321_00485	145.0	1.10002e-41	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-0138694_38	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0138694_38	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0138694_38	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0138694_38	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0138694_38	PF00436,MF_00984,TIGR00621,COG0629	N/A	N/A	N/A	N/A
KOfam	UHGV-0138694_40	K02315	152.1	4.2039e-45	dnaC; DNA replication protein DnaC	N/A
PHROG	UHGV-0138694_40	phrog_50	150.5	1.26117e-44	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0138694_40	UniRef90_A0A517DS75	149.0	3.08005e-42	IstB-like ATP binding protein	N/A
eggNOG-mapper	UHGV-0138694_40	1401067.HMPREF0872_03455	147.0	3.64001e-41	DNA-dependent DNA replication	N/A
Pfam	UHGV-0138694_40	PF01695	N/A	N/A	IstB-like ATP binding protein	IstB_IS21
COG	UHGV-0138694_40	COG1484	N/A	N/A	DNA replication protein DnaC	N/A
structural_annotation	UHGV-0138694_40	PF01695,MF_00377,NF005992,COG1484	N/A	N/A	N/A	N/A
PHROG	UHGV-0138694_41	phrog_5968	130.5	1.1e-38	replisome organizer	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0138694_41	UniRef90_R9KLZ4	122.0	1.94e-29	Phage_rep_org_N domain-containing protein	N/A
eggNOG-mapper	UHGV-0138694_41	1235793.C809_02194	122.0	3.25e-30	Phage replisome organizer, N-terminal domain protein	N/A
Pfam	UHGV-0138694_41	PF09681	N/A	N/A	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
NCBIFam	UHGV-0138694_41	TIGR01714.1	N/A	N/A	phage replisome organizer, putative, N-terminal region	N/A
COG	UHGV-0138694_41	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0138694_41	PF09681,TIGR01714,COG3355	N/A	N/A	N/A	N/A
KOfam	UHGV-0138694_42	K07451	41.7	0.000000000021	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	N/A
PHROG	UHGV-0138694_42	phrog_22514	42.5	0.000000000013	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0138694_42	UniRef90_UPI0018C6C2FD	68.2	0.000000000000685	HNH endonuclease	N/A
Pfam	UHGV-0138694_42	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0138694_42	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-0138694_42	PF01844,COG1403	N/A	N/A	N/A	N/A
PHROG	UHGV-0138694_43	phrog_72	57.0	1.9e-16	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0138694_43	445972.ANACOL_01825	96.7	8.81e-23	N/A	N/A
structural_annotation	UHGV-0138694_43	PF05772	N/A	N/A	N/A	N/A
PHROG	UHGV-0138694_44	phrog_14970	240.0	0	N/A	unknown function
UniRef90	UHGV-0138694_44	UniRef90_A0A1C5NV07	200.0	0	DNA damage response protein A	N/A
eggNOG-mapper	UHGV-0138694_44	411476.BACOVA_03882	193.0	0	double-strand break repair protein	N/A
Pfam	UHGV-0138694_44	PF04098	N/A	N/A	Rad52/22 family double-strand break repair protein	Rad52_Rad22
COG	UHGV-0138694_44	COG4712	N/A	N/A	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	N/A
structural_annotation	UHGV-0138694_44	PF04098,TIGR00607,COG4712	N/A	N/A	N/A	N/A
PHROG	UHGV-0138694_45	phrog_674	71.2	5.7e-21	N/A	unknown function
UniRef90	UHGV-0138694_45	UniRef90_A0A2S0M9A8	160.0	1.03976e-42	N/A	N/A
eggNOG-mapper	UHGV-0138694_45	318464.IO99_00465	64.7	0.00000000774	N/A	N/A
Pfam	UHGV-0138694_45	PF07083	N/A	N/A	N/A	DUF1351
KOfam	UHGV-0138694_51	K22300	56.4	6.2e-16	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0138694_51	phrog_3	51.7	0.000000000000041	transcriptional repressor	transcription regulation
UniRef90	UHGV-0138694_51	UniRef90_A0A7X9GM97	52.8	0.000000107	Helix-turn-helix transcriptional regulator (Fragment)	N/A
eggNOG-mapper	UHGV-0138694_51	411461.DORFOR_01990	55.5	0.0000000381	Helix-turn-helix domain	N/A
Pfam	UHGV-0138694_51	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0138694_51	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0138694_51	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0138694_52	1200567.JNKD01000011_gene667	57.0	0.0000000257	N/A	N/A
structural_annotation	UHGV-0138694_52	PF04232,MF_01122,NF003088	N/A	N/A	N/A	N/A