UHGV-0141958 (vOTU-038352)

Viral Genome: UHGV-0141958

Genome Information

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Overview
UHGV ID	UHGV-0141958
vOTU ID	vOTU-038352
Representative Genome?	Yes
Source	GPD
Original Genome ID	uvig_406833
Associated Biosample	N/A
Viral Genome Confidence	Confident

Quality Assessment
CheckV Method	AAI-based
CheckV Completeness	65.6 (Medium-quality)
Trimmed?	No
CheckV Viral Markers	11
CheckV Host Markers	0
Recoded?	No

Viral Content
geNomad score	0.9831
Viral Hallmark Genes (geNomad)	5
Plasmid Hallmark Genes (geNomad)	0
ViralVerify Prediction	Virus
ViralVerify Score	31.22
Jumbo Phage?	No

Genome Content
Length (bps)	27,993
GC Content	58.13%
Genetic Code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS Genes	45
CDS Density	96%
Average CDS Length (bps)	594.40
Total tRNA Genes	0
Suppressor tRNA Genes	0

Genome Content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 65.6)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
eggNOG-mapper	UHGV-0141958_1	693746.OBV_23800	177.0	3.96567e-43	N/A	N/A
eggNOG-mapper	UHGV-0141958_2	1410650.JHWL01000003_gene2815	72.0	0.0000000000443	N/A	N/A
UniRef90	UHGV-0141958_3	UniRef90_A0A8D9UGT1	107.0	1.28e-27	Sigma C capsid protein	N/A
PHROG	UHGV-0141958_4	phrog_511	226.5	0	internal virion protein	head and packaging
UniRef90	UHGV-0141958_4	UniRef90_A0A8D9UH72	807.0	0	Stabilization protein (Fragment)	N/A
eggNOG-mapper	UHGV-0141958_4	1226322.HMPREF1545_00785	311.0	0	N/A	N/A
structural_annotation	UHGV-0141958_4	PF11134,TIGR03300,NF038126,COG1520	N/A	N/A	N/A	N/A
PHROG	UHGV-0141958_5	phrog_12105	84.5	4e-25	N/A	unknown function
eggNOG-mapper	UHGV-0141958_5	1519439.JPJG01000060_gene1891	63.5	0.0000000000251	N/A	N/A
KOfam	UHGV-0141958_6	K01448	49.8	0.000000000000051	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0141958_6	phrog_1493	69.6	5.7e-20	endolysin	lysis
UniRef90	UHGV-0141958_6	UniRef90_A0A810PUG7	213.0	0	SPOR domain-containing protein	N/A
eggNOG-mapper	UHGV-0141958_6	411473.RUMCAL_02267	103.0	2.62e-23	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-0141958_6	PF01520	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_3
Pfam	UHGV-0141958_6	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-0141958_6	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0141958_6	PF01520,PF01471,MF_00562,TIGR02883,COG0860,COG3409	N/A	N/A	N/A	N/A
PHROG	UHGV-0141958_7	phrog_881	89.1	2.4e-26	holin	lysis
UniRef90	UHGV-0141958_7	UniRef90_UPI00189D3A4F	85.9	1.82e-20	phage holin	N/A
eggNOG-mapper	UHGV-0141958_7	742740.HMPREF9474_02251	82.8	5.61e-20	Putative phage holin Dp-1	N/A
Pfam	UHGV-0141958_7	PF16938	N/A	N/A	Putative phage holin Dp-1	Phage_holin_Dp1
structural_annotation	UHGV-0141958_7	PF16938,COG3237	N/A	N/A	N/A	N/A
PHROG	UHGV-0141958_8	phrog_4105	96.6	1.8e-28	N/A	unknown function
UniRef90	UHGV-0141958_8	UniRef90_A0A8D9UHA9	138.0	1.84999e-40	Holin protein	N/A
eggNOG-mapper	UHGV-0141958_8	742740.HMPREF9474_02252	122.0	1.01e-34	N/A	N/A
KOfam	UHGV-0141958_9	K10062	53.6	0.0000000000000017	COLEC12; collectin sub-family member 12	N/A
PHROG	UHGV-0141958_9	phrog_5073	49.1	0.000000000000067	tail fiber protein	tail
Pfam	UHGV-0141958_9	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
structural_annotation	UHGV-0141958_9	PF04862,NF033675	N/A	N/A	N/A	N/A
KOfam	UHGV-0141958_10	K16628	53.4	8.8e-16	COL7A; collagen type VII alpha	N/A
PHROG	UHGV-0141958_10	phrog_6320	43.1	0.0000000000062	tail fiber protein	tail
Pfam	UHGV-0141958_10	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
structural_annotation	UHGV-0141958_10	PF10651	N/A	N/A	N/A	N/A
PHROG	UHGV-0141958_11	phrog_15239	89.1	2.1e-26	N/A	unknown function
eggNOG-mapper	UHGV-0141958_11	1449126.JQKL01000003_gene1694	50.1	0.00000738	N/A	N/A
PHROG	UHGV-0141958_12	phrog_1357	259.3	0	major head protein	head and packaging
UniRef90	UHGV-0141958_12	UniRef90_A0A8D9UH64	708.0	0	Major capsid protein	N/A
eggNOG-mapper	UHGV-0141958_12	1449126.JQKL01000003_gene1695	421.0	0	N/A	N/A
Pfam	UHGV-0141958_12	PF13252	N/A	N/A	N/A	DUF4043
NCBIFam	UHGV-0141958_12	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-0141958_12	PF13252,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0141958_13	phrog_13908	298.5	0	N/A	unknown function
UniRef90	UHGV-0141958_13	UniRef90_A0A844DRV7	110.0	1.41e-23	Ribosomal-processing cysteine protease Prp	N/A
eggNOG-mapper	UHGV-0141958_13	1410650.JHWL01000003_gene2831	115.0	2.79e-27	N/A	N/A
UniRef90	UHGV-0141958_14	UniRef90_A0A8D9PDR6	166.0	0	YsxB-like protein	N/A
Pfam	UHGV-0141958_14	PF04327	N/A	N/A	Cysteine protease Prp	Peptidase_Prp
structural_annotation	UHGV-0141958_14	NF011128,COG2868	N/A	N/A	N/A	N/A
PHROG	UHGV-0141958_15	phrog_156	334.1	0	portal protein	head and packaging
UniRef90	UHGV-0141958_15	UniRef90_A0A8D9UH10	1135.0	0	Portal protein	N/A
eggNOG-mapper	UHGV-0141958_15	748224.HMPREF9436_01396	534.0	0	N/A	N/A
structural_annotation	UHGV-0141958_15	PF16510,MF_04120,TIGR01538,COG4383	N/A	N/A	N/A	N/A
KOfam	UHGV-0141958_16	K06909	120.9	1.3e-35	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0141958_16	phrog_979	197.8	0	terminase large subunit	head and packaging
UniRef90	UHGV-0141958_16	UniRef90_A0A8D9PDR5	951.0	0	Large subunit terminase	N/A
eggNOG-mapper	UHGV-0141958_16	657322.FPR_02290	610.0	0	Terminase-like family	N/A
Pfam	UHGV-0141958_16	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0141958_16	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0141958_16	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
UniRef90	UHGV-0141958_17	UniRef90_A0A8D9PDT2	178.0	0	Brinker DNA-binding domain protein	N/A
eggNOG-mapper	UHGV-0141958_17	1226322.HMPREF1545_00042	139.0	1.76e-40	N/A	N/A
structural_annotation	UHGV-0141958_17	PF04218,COG3677	N/A	N/A	N/A	N/A
UniRef90	UHGV-0141958_20	UniRef90_A0A8D9PDK2	120.0	9.57e-34	Zinc-ribbon containing domain	N/A
UniRef90	UHGV-0141958_22	UniRef90_A0A8D9PDK2	62.0	0.0000000005	Zinc-ribbon containing domain	N/A
PHROG	UHGV-0141958_23	phrog_599	46.6	0.00000000000071	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0141958_23	UniRef90_A0A315Y4I9	107.0	2.23e-28	Lar family restriction alleviation protein	N/A
Pfam	UHGV-0141958_23	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
NCBIFam	UHGV-0141958_23	TIGR03655.1	N/A	N/A	Lar family restriction alleviation protein	N/A
structural_annotation	UHGV-0141958_23	TIGR03655	N/A	N/A	N/A	N/A
PHROG	UHGV-0141958_24	phrog_38832	45.2	0.0000000000011	N/A	unknown function
Pfam	UHGV-0141958_24	PF04448	N/A	N/A	N/A	DUF551
PHROG	UHGV-0141958_28	phrog_16528	82.2	8.1e-29	DNA methyltransferase	other
UniRef90	UHGV-0141958_28	UniRef90_A0A6L5TDR3	221.0	0	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-0141958_28	657322.FPR_26610	196.0	0	DNA (cytosine-5-)-methyltransferase activity	N/A
Pfam	UHGV-0141958_28	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
COG	UHGV-0141958_28	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
PHROG	UHGV-0141958_31	phrog_190	112.5	3.2e-33	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0141958_31	UniRef90_A0A8D9PDD6	260.0	0	Endonuclease	N/A
eggNOG-mapper	UHGV-0141958_31	1226322.HMPREF1545_00295	119.0	2.26e-32	N/A	N/A
Pfam	UHGV-0141958_31	PF06356	N/A	N/A	N/A	DUF1064
structural_annotation	UHGV-0141958_31	PF06356	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0141958_33	PF11417	N/A	N/A	N/A	N/A
PHROG	UHGV-0141958_34	phrog_15768	45.0	0.0000000000021	N/A	unknown function
UniRef90	UHGV-0141958_34	UniRef90_UPI0019563B2C	77.8	9.37e-17	N/A	N/A
eggNOG-mapper	UHGV-0141958_34	1121344.JHZO01000003_gene982	58.2	0.00000000419	N/A	N/A
Pfam	UHGV-0141958_34	PF19808	N/A	N/A	N/A	DUF6291
structural_annotation	UHGV-0141958_34	PF19808	N/A	N/A	N/A	N/A
KOfam	UHGV-0141958_37	K03111	148.0	9.24857e-44	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0141958_37	phrog_44	148.9	2.66247e-44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0141958_37	UniRef90_A0A810QFR8	197.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0141958_37	1007096.BAGW01000023_gene151	195.0	0	Single-strand binding protein family	N/A
Pfam	UHGV-0141958_37	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0141958_37	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0141958_37	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0141958_37	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0141958_37	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0141958_38	PF12844,MF_00535,NF041951,COG5499	N/A	N/A	N/A	N/A
PHROG	UHGV-0141958_39	phrog_7566	95.5	3.3e-28	N/A	unknown function
UniRef90	UHGV-0141958_39	UniRef90_A0A8D9UHC0	179.0	0	Recombination enhancement function protein nuclease	N/A
eggNOG-mapper	UHGV-0141958_39	693746.OBV_24070	119.0	9.01e-34	N/A	N/A
PHROG	UHGV-0141958_40	phrog_72	41.2	0.000000000012	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0141958_40	UniRef90_A0A8D9PDS2	306.0	0	NinB protein	N/A
eggNOG-mapper	UHGV-0141958_40	445972.ANACOL_01825	123.0	2.94e-33	N/A	N/A
structural_annotation	UHGV-0141958_40	PF05772	N/A	N/A	N/A	N/A
PHROG	UHGV-0141958_41	phrog_155	152.5	2.8026e-45	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0141958_41	UniRef90_UPI00130EB09C	198.0	0	ERF family protein	N/A
eggNOG-mapper	UHGV-0141958_41	97138.C820_00777	180.0	0	ERF superfamily	N/A
Pfam	UHGV-0141958_41	PF04404	N/A	N/A	ERF superfamily	ERF
structural_annotation	UHGV-0141958_41	PF04404,COG4712	N/A	N/A	N/A	N/A
PHROG	UHGV-0141958_42	phrog_253	85.6	6.3e-25	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0141958_42	UniRef90_A0A8D9PDS3	207.0	0	Resistance protein	N/A
eggNOG-mapper	UHGV-0141958_42	748224.HMPREF9436_03356	96.7	3.68e-23	Siphovirus Gp157	N/A
Pfam	UHGV-0141958_42	PF05565	N/A	N/A	Siphovirus Gp157	Sipho_Gp157
structural_annotation	UHGV-0141958_42	PF05565	N/A	N/A	N/A	N/A
UniRef90	UHGV-0141958_44	UniRef90_A0A8D9UH91	274.0	0	HTH cro/C1-type domain-containing protein	N/A
Pfam	UHGV-0141958_44	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0141958_44	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0141958_44	PF01381,PF21715,NF041951,TIGR04176,COG1476,COG1654	N/A	N/A	N/A	N/A
PHROG	UHGV-0141958_45	phrog_27197	67.7	1.8e-19	N/A	unknown function
eggNOG-mapper	UHGV-0141958_45	767434.Fraau_1460	50.1	0.00000723	regulation of DNA-templated transcription, elongation	N/A
COG	UHGV-0141958_45	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A