UHGV-0142409 (vOTU-019031)

Viral Genome: UHGV-0142409

Genome Information

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Overview
UHGV ID	UHGV-0142409
vOTU ID	vOTU-019031
Representative Genome?	Yes
Source	GPD
Original Genome ID	uvig_440503
Associated Biosample	N/A
Viral Genome Confidence	Confident

Quality Assessment
CheckV Method	AAI-based
CheckV Completeness	84.53 (Medium-quality)
Trimmed?	No
CheckV Viral Markers	18
CheckV Host Markers	0
Recoded?	No

Viral Content
geNomad score	0.9817
Viral Hallmark Genes (geNomad)	11
Plasmid Hallmark Genes (geNomad)	0
ViralVerify Prediction	Virus
ViralVerify Score	51.6
Jumbo Phage?	No

Genome Content
Length (bps)	37,334
GC Content	52.50%
Genetic Code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS Genes	63
CDS Density	94%
Average CDS Length (bps)	554.29
Total tRNA Genes	0
Suppressor tRNA Genes	0

Genome Content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 84.53)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
structural_annotation	UHGV-0142409_1	PF09943	N/A	N/A	N/A	N/A
PHROG	UHGV-0142409_3	phrog_2872	211.1	0	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0142409_3	UniRef90_UPI00058FD242	293.0	0	AAA family ATPase	N/A
eggNOG-mapper	UHGV-0142409_3	1345695.CLSA_c30180	291.0	0	AAA domain	N/A
structural_annotation	UHGV-0142409_3	PF13479,MF_00350,TIGR01618,COG0468	N/A	N/A	N/A	N/A
PHROG	UHGV-0142409_4	phrog_18107	46.1	0.00000000000032	N/A	unknown function
UniRef90	UHGV-0142409_4	UniRef90_R6I207	75.9	0.0000000000000898	PF05037 family protein	N/A
eggNOG-mapper	UHGV-0142409_4	903814.ELI_1274	137.0	1.04e-38	N/A	N/A
structural_annotation	UHGV-0142409_4	PF05037	N/A	N/A	N/A	N/A
PHROG	UHGV-0142409_5	phrog_15768	59.7	7e-17	N/A	unknown function
eggNOG-mapper	UHGV-0142409_5	1121344.JHZO01000003_gene982	61.2	0.0000000136	N/A	N/A
Pfam	UHGV-0142409_5	PF19808	N/A	N/A	N/A	DUF6291
structural_annotation	UHGV-0142409_5	PF19808	N/A	N/A	N/A	N/A
PHROG	UHGV-0142409_6	phrog_9804	152.2	2.8026e-45	N/A	unknown function
UniRef90	UHGV-0142409_6	UniRef90_UPI0018976F94	340.0	0	replicative helicase loader/inhibitor	N/A
eggNOG-mapper	UHGV-0142409_6	1121344.JHZO01000003_gene981	180.0	0	Loader and inhibitor of phage G40P	N/A
Pfam	UHGV-0142409_6	PF11417	N/A	N/A	Loader and inhibitor of phage G40P	Inhibitor_G39P
structural_annotation	UHGV-0142409_6	PF11417	N/A	N/A	N/A	N/A
KOfam	UHGV-0142409_7	K01160	46.7	0.00000000000084	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0142409_7	phrog_4632	52.9	0.0000000000000014	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0142409_7	UniRef90_A0A1V5ZUM0	119.0	4.81e-32	Endodeoxyribonuclease RusA	N/A
eggNOG-mapper	UHGV-0142409_7	469604.HMPREF0946_00819	60.1	0.000000000645	N/A	N/A
structural_annotation	UHGV-0142409_7	PF19595,NF007305,COG4570	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0142409_8	PF12759	N/A	N/A	N/A	N/A
KOfam	UHGV-0142409_9	K00571	176.3	0	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-0142409_9	phrog_67	163.3	0	DNA methyltransferase	other
UniRef90	UHGV-0142409_9	UniRef90_A0A174E7S0	571.0	0	Methyltransferase	N/A
eggNOG-mapper	UHGV-0142409_9	479437.Elen_2608	276.0	0	Belongs to the N(4) N(6)-methyltransferase family	N/A
PADLOC	UHGV-0142409_9	MTase_II_00107	195.5	0	Type II methyltransferase	RM
Pfam	UHGV-0142409_9	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-0142409_9	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-0142409_9	PF01555,MF_01872,NF010253,COG0863	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0142409_10	742738.HMPREF9460_04055	134.0	2.36e-39	N/A	N/A
structural_annotation	UHGV-0142409_12	NF011227	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0142409_13	NF000937	N/A	N/A	N/A	N/A
PHROG	UHGV-0142409_14	phrog_38832	46.3	0.00000000000071	N/A	unknown function
eggNOG-mapper	UHGV-0142409_14	665956.HMPREF1032_00143	53.1	0.00000026	N/A	N/A
PHROG	UHGV-0142409_19	phrog_8684	87.6	8.3e-27	N/A	unknown function
UniRef90	UHGV-0142409_19	UniRef90_UPI001D00D0A2	206.0	0	YopX family protein	N/A
eggNOG-mapper	UHGV-0142409_19	1095737.HMPREF1110_1215	107.0	4.93e-28	YopX protein	N/A
Pfam	UHGV-0142409_19	PF09643	N/A	N/A	YopX protein	YopX
structural_annotation	UHGV-0142409_19	PF09643,TIGR01671	N/A	N/A	N/A	N/A
PHROG	UHGV-0142409_20	phrog_924	47.6	0.00000000000038	N/A	unknown function
UniRef90	UHGV-0142409_20	UniRef90_UPI0019214AF7	152.0	0	N/A	N/A
eggNOG-mapper	UHGV-0142409_20	155864.EDL933_3275	51.2	0.000000281	N/A	N/A
Pfam	UHGV-0142409_20	PF04448	N/A	N/A	N/A	DUF551
COG	UHGV-0142409_20	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-0142409_20	NF041588	N/A	N/A	N/A	N/A
KOfam	UHGV-0142409_21	K22300	49.8	0.000000000000054	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0142409_21	phrog_4836	40.8	0.000000000026	CII-like regulator	transcription regulation
UniRef90	UHGV-0142409_21	UniRef90_U2R0P8	295.0	0	DNA-binding helix-turn-helix protein	N/A
eggNOG-mapper	UHGV-0142409_21	1226322.HMPREF1545_02890	295.0	0	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0142409_21	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0142409_21	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0142409_23	K07741	204.3	0	antB; anti-repressor protein	N/A
PHROG	UHGV-0142409_23	phrog_63	162.6	0	anti-repressor Ant	transcription regulation
UniRef90	UHGV-0142409_23	UniRef90_A0A7I8D1Y4	330.0	0	Putative P1-type antirepressor - phage associated	N/A
eggNOG-mapper	UHGV-0142409_23	1232443.BAIA02000079_gene53	328.0	0	AntA/AntB antirepressor	N/A
Pfam	UHGV-0142409_23	PF08346	N/A	N/A	AntA/AntB antirepressor	AntA
Pfam	UHGV-0142409_23	PF03374	N/A	N/A	Phage antirepressor protein KilAC domain	ANT
COG	UHGV-0142409_23	COG3561	N/A	N/A	Phage anti-repressor protein Ant	N/A
structural_annotation	UHGV-0142409_23	PF03374,PF08346,TIGR02681,COG3645,COG3561	N/A	N/A	N/A	N/A
KOfam	UHGV-0142409_24	K07474	110.0	4.4e-32	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-0142409_24	phrog_51	100.5	1.2e-29	terminase small subunit	head and packaging
UniRef90	UHGV-0142409_24	UniRef90_UPI001D05F697	232.0	0	terminase small subunit	N/A
eggNOG-mapper	UHGV-0142409_24	1316932.MHH_c17910	90.1	7.33e-21	Terminase small subunit	N/A
Pfam	UHGV-0142409_24	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-0142409_24	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0142409_24	PF03592,COG3728	N/A	N/A	N/A	N/A
KOfam	UHGV-0142409_25	K06909	385.3	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0142409_25	phrog_5653	158.9	0	terminase large subunit	head and packaging
UniRef90	UHGV-0142409_25	UniRef90_A0A2U1BEH4	808.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0142409_25	33035.JPJF01000106_gene3136	459.0	0	Terminase small subunit	N/A
Pfam	UHGV-0142409_25	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-0142409_25	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-0142409_25	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0142409_25	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0142409_25	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0142409_27	phrog_533	410.3	0	portal protein	head and packaging
UniRef90	UHGV-0142409_27	UniRef90_UPI001D078D46	911.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0142409_27	1226322.HMPREF1545_00044	777.0	0	N/A	N/A
Pfam	UHGV-0142409_27	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0142409_27	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0142409_28	phrog_581	282.6	0	minor head protein	head and packaging
UniRef90	UHGV-0142409_28	UniRef90_UPI001D080D49	881.0	0	phage minor capsid protein	N/A
eggNOG-mapper	UHGV-0142409_28	1226322.HMPREF1545_00046	399.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-0142409_28	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0142409_28	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0142409_28	PF06152,PF15542,TIGR01641,COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-0142409_30	phrog_2303	63.1	5.5e-18	head scaffolding protein	head and packaging
eggNOG-mapper	UHGV-0142409_30	1226322.HMPREF1545_00049	265.0	0	N/A	N/A
PHROG	UHGV-0142409_31	phrog_10	176.6	0	major head protein	head and packaging
UniRef90	UHGV-0142409_31	UniRef90_U2SBS0	629.0	0	Phage capsid family protein	N/A
eggNOG-mapper	UHGV-0142409_31	1226322.HMPREF1545_00050	629.0	0	Phage capsid family	N/A
Pfam	UHGV-0142409_31	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0142409_31	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0142409_31	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0142409_31	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0142409_32	1226322.HMPREF1545_00051	199.0	0	N/A	N/A
PHROG	UHGV-0142409_33	phrog_541	110.6	8.5e-33	head-tail adaptor	connector
eggNOG-mapper	UHGV-0142409_33	1120998.AUFC01000030_gene2237	59.7	0.00000000169	N/A	N/A
PHROG	UHGV-0142409_34	phrog_3366	111.8	4.9e-33	N/A	unknown function
eggNOG-mapper	UHGV-0142409_34	1226322.HMPREF1545_00053	204.0	0	N/A	N/A
structural_annotation	UHGV-0142409_34	PF20536,TIGR01563	N/A	N/A	N/A	N/A
PHROG	UHGV-0142409_35	phrog_556	70.8	1.7e-20	minor head protein	head and packaging
UniRef90	UHGV-0142409_35	UniRef90_UPI00195E1497	258.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-0142409_35	1226322.HMPREF1545_00054	173.0	0	Minor capsid protein	N/A
Pfam	UHGV-0142409_35	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0142409_35	PF11114,TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-0142409_36	phrog_3266	58.7	9.2e-17	tail completion	connector
UniRef90	UHGV-0142409_36	UniRef90_A0A2Z4QA01	109.0	4.66e-28	Minor capsid protein	N/A
eggNOG-mapper	UHGV-0142409_36	1232443.BAIA02000078_gene24	248.0	0	N/A	N/A
structural_annotation	UHGV-0142409_36	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-0142409_37	phrog_3099	90.2	2.6e-26	N/A	unknown function
eggNOG-mapper	UHGV-0142409_37	1232443.BAIA02000078_gene23	317.0	0	N/A	N/A
structural_annotation	UHGV-0142409_37	PF10772,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0142409_38	phrog_11299	86.8	2.9e-25	N/A	unknown function
eggNOG-mapper	UHGV-0142409_38	693746.OBV_18160	196.0	0	N/A	N/A
structural_annotation	UHGV-0142409_38	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-0142409_39	phrog_706	89.1	4.7e-26	N/A	unknown function
UniRef90	UHGV-0142409_39	UniRef90_UPI001D069FB9	384.0	0	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-0142409_39	693746.OBV_18170	191.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0142409_39	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0142409_39	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0142409_40	phrog_8545	49.2	0.000000000000085	superinfection exclusion Sie-like	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0142409_40	UniRef90_UPI001D05CE4F	75.5	0.000000000000542	OB-fold putative lipoprotein	N/A
eggNOG-mapper	UHGV-0142409_40	1203606.HMPREF1526_01637	69.7	0.0000000000104	tRNA_anti-like	N/A
Pfam	UHGV-0142409_40	PF12869	N/A	N/A	tRNA_anti-like	tRNA_anti-like
PHROG	UHGV-0142409_41	phrog_1535	97.7	1.3e-32	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0142409_41	693746.OBV_18190	185.0	1.4013e-45	domain protein	N/A
COG	UHGV-0142409_41	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0142409_41	PF05546,TIGR02559	N/A	N/A	N/A	N/A
PHROG	UHGV-0142409_42	phrog_1194	63.4	3.5e-18	N/A	unknown function
eggNOG-mapper	UHGV-0142409_42	1226322.HMPREF1545_00060	235.0	0	N/A	N/A
structural_annotation	UHGV-0142409_42	PF20458,TIGR01633,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0142409_43	phrog_32744	636.9	0	N/A	unknown function
eggNOG-mapper	UHGV-0142409_43	1120998.AUFC01000030_gene2247	273.0	0	N/A	N/A
structural_annotation	UHGV-0142409_43	PF14594,PF21722,NF033848,COG4379	N/A	N/A	N/A	N/A
UniRef90	UHGV-0142409_45	UniRef90_UPI001C1090AB	101.0	3.31e-23	collagen-like protein	N/A
eggNOG-mapper	UHGV-0142409_45	1297617.JPJD01000099_gene2171	103.0	4.69e-23	Collagen triple helix repeat protein	N/A
COG	UHGV-0142409_45	COG3266	N/A	N/A	Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain	N/A
structural_annotation	UHGV-0142409_45	PF10651,COG5456	N/A	N/A	N/A	N/A
PHROG	UHGV-0142409_47	phrog_10898	258.3	0	N/A	unknown function
UniRef90	UHGV-0142409_47	UniRef90_A0A7U3NJT3	185.0	0	Putative Ig-like domain-containing protein	N/A
eggNOG-mapper	UHGV-0142409_47	935837.JAEK01000059_gene4869	68.2	0.000000000193	O-Glycosyl hydrolase family 30	N/A
COG	UHGV-0142409_47	COG3401	N/A	N/A	Fibronectin type 3 domain	N/A
structural_annotation	UHGV-0142409_47	PF19081,PF15418,MF_01905,NF032891,COG3291	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0142409_48	PF16408,NF033510	N/A	N/A	N/A	N/A
PHROG	UHGV-0142409_49	phrog_863	48.3	0.00000000000025	tail fiber assembly	tail
PHROG	UHGV-0142409_50	phrog_27545	245.6	0	N/A	unknown function
UniRef90	UHGV-0142409_50	UniRef90_C6LG78	56.2	0.00000114	Carbohydrate binding domain protein	N/A
eggNOG-mapper	UHGV-0142409_50	742738.HMPREF9460_00363	277.0	0	N/A	N/A
PHROG	UHGV-0142409_52	phrog_22773	204.8	0	N/A	unknown function
UniRef90	UHGV-0142409_52	UniRef90_UPI001958116B	183.0	0	toxin-antitoxin system toxin subunit	N/A
eggNOG-mapper	UHGV-0142409_52	742738.HMPREF9460_03965	180.0	0	N/A	N/A
PHROG	UHGV-0142409_53	phrog_2310	61.2	9.6e-18	N/A	unknown function
KOfam	UHGV-0142409_54	K01448	179.1	0	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0142409_54	phrog_18955	380.8	0	N/A	unknown function
UniRef90	UHGV-0142409_54	UniRef90_A0A1C7FQI4	776.0	0	MurNAc-LAA domain-containing protein	N/A
eggNOG-mapper	UHGV-0142409_54	1121344.JHZO01000003_gene744	259.0	0	Ami_3	N/A
Pfam	UHGV-0142409_54	PF09992	N/A	N/A	Phosphodiester glycosidase	NAGPA
Pfam	UHGV-0142409_54	PF01520	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_3
COG	UHGV-0142409_54	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0142409_54	PF01520,PF09992,MF_00417,TIGR02883,COG0860,COG4632	N/A	N/A	N/A	N/A
PHROG	UHGV-0142409_55	phrog_1129	76.7	1.9e-22	holin	lysis
UniRef90	UHGV-0142409_55	UniRef90_A0A1C7FPV3	164.0	0	Enolase	N/A
eggNOG-mapper	UHGV-0142409_55	1226322.HMPREF1545_00069	140.0	1.80067e-42	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-0142409_55	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0142409_55	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-0142409_56	phrog_4105	83.1	2.4e-24	N/A	unknown function
eggNOG-mapper	UHGV-0142409_56	537013.CLOSTMETH_01753	84.0	1.25e-19	N/A	N/A
UniRef90	UHGV-0142409_57	UniRef90_A0A1C6JAI6	71.2	0.0000000000000178	RNA polymerase sigma factor, sigma-70 family	N/A
structural_annotation	UHGV-0142409_57	PF16509,MF_00245,NF001066,COG2739	N/A	N/A	N/A	N/A
PHROG	UHGV-0142409_60	phrog_3754	97.8	1.1e-28	N/A	unknown function
eggNOG-mapper	UHGV-0142409_60	476272.RUMHYD_01764	174.0	0	N/A	N/A
PHROG	UHGV-0142409_61	phrog_21718	112.0	4.6e-33	N/A	unknown function
eggNOG-mapper	UHGV-0142409_61	397290.C810_05210	72.8	0.0000000000000572	N/A	N/A
PHROG	UHGV-0142409_62	phrog_22984	114.1	5.6e-34	N/A	unknown function
PHROG	UHGV-0142409_63	phrog_16490	283.8	0	N/A	unknown function
eggNOG-mapper	UHGV-0142409_63	1226322.HMPREF1545_00076	223.0	0	N/A	N/A