UHGV-0169140 (vOTU-016049)

Viral Genome: UHGV-0169140

Genome Information

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Overview
UHGV ID	UHGV-0169140
vOTU ID	vOTU-016049
Representative Genome?	Yes
Source	GPD
Original Genome ID	uvig_540447
Associated Biosample	SAMN06328439
Viral Genome Confidence	Confident

Quality Assessment
CheckV Method	AAI-based
CheckV Completeness	82.3 (Medium-quality)
Trimmed?	No
CheckV Viral Markers	16
CheckV Host Markers	0
Recoded?	No

Viral Content
geNomad score	0.9803
Viral Hallmark Genes (geNomad)	7
Plasmid Hallmark Genes (geNomad)	0
ViralVerify Prediction	Virus
ViralVerify Score	62.33
Jumbo Phage?	No

Genome Content
Length (bps)	31,633
GC Content	48.64%
Genetic Code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS Genes	55
CDS Density	94%
Average CDS Length (bps)	540.06
Total tRNA Genes	0
Suppressor tRNA Genes	0

Genome Content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 82.3)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0169140_1	K14623	273.9	0	dinD; DNA-damage-inducible protein D	N/A
PHROG	UHGV-0169140_1	phrog_8036	259.1	0	N/A	unknown function
UniRef90	UHGV-0169140_1	UniRef90_R5A7E7	422.0	0	Bro-N domain-containing protein	N/A
eggNOG-mapper	UHGV-0169140_1	1514668.JOOA01000001_gene65	262.0	0	BRO family, N-terminal domain	N/A
AcrCatalog	UHGV-0169140_1	cluster_17589	124.0	2.08e-36	NA	N/A
PADLOC	UHGV-0169140_1	Specificity_I_00032	222.2	0	Type I specificity subunit	RM
Pfam	UHGV-0169140_1	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
NCBIFam	UHGV-0169140_1	NF008573.0	N/A	N/A	DNA damage-inducible protein D	N/A
COG	UHGV-0169140_1	COG3645	N/A	N/A	Phage antirepressor protein YoqD, KilAC domain	N/A
PHROG	UHGV-0169140_2	phrog_20886	41.0	0.000000000022	N/A	unknown function
UniRef90	UHGV-0169140_2	UniRef90_UPI0007E1B082	57.4	0.00000000207	ImmA/IrrE family metallo-endopeptidase	N/A
PHROG	UHGV-0169140_3	phrog_8	58.7	1.5e-16	transcriptional regulator	transcription regulation
UniRef90	UHGV-0169140_3	UniRef90_R5ADP7	247.0	0	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0169140_3	1536772.R70723_06535	84.0	3.89e-19	addiction module antidote protein HigA	N/A
Pfam	UHGV-0169140_3	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
COG	UHGV-0169140_3	COG3093	N/A	N/A	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	N/A
structural_annotation	UHGV-0169140_3	PF12844,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0169140_4	phrog_8	54.4	0.0000000000000032	transcriptional regulator	transcription regulation
UniRef90	UHGV-0169140_4	UniRef90_R5A8W1	127.0	2.25e-37	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0169140_4	476272.RUMHYD_02827	99.8	5.54e-27	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	N/A
Pfam	UHGV-0169140_4	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0169140_4	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-0169140_4	PF01381,NF041951,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-0169140_6	phrog_585	55.0	0.0000000000000017	N/A	unknown function
UniRef90	UHGV-0169140_6	UniRef90_UPI000F79CF5C	58.2	0.0000000215	N/A	N/A
eggNOG-mapper	UHGV-0169140_6	411460.RUMTOR_02060	74.3	0.00000000000000173	N/A	N/A
Pfam	UHGV-0169140_6	PF10711	N/A	N/A	N/A	DUF2513
UniRef90	UHGV-0169140_9	UniRef90_R5A8W4	157.0	0	HTH cro/C1-type domain-containing protein	N/A
Pfam	UHGV-0169140_9	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
PHROG	UHGV-0169140_13	phrog_7838	126.3	2.7e-37	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0169140_13	UniRef90_A0A8D9UGW3	175.0	0	DNA repair protein RAD52-like protein	N/A
eggNOG-mapper	UHGV-0169140_13	742767.HMPREF9456_02052	177.0	0	N/A	N/A
structural_annotation	UHGV-0169140_13	PF04098,TIGR00607,COG4380	N/A	N/A	N/A	N/A
PHROG	UHGV-0169140_14	phrog_72	76.2	4.3e-22	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0169140_14	UniRef90_A0A8D9PDS2	144.0	2.15e-40	NinB protein	N/A
eggNOG-mapper	UHGV-0169140_14	1507.HMPREF0262_00432	119.0	1.43e-31	N/A	N/A
structural_annotation	UHGV-0169140_14	PF05772,NF007281	N/A	N/A	N/A	N/A
PHROG	UHGV-0169140_15	phrog_244	76.6	4.3e-22	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0169140_15	33035.JPJF01000122_gene2460	161.0	0	N/A	N/A
PHROG	UHGV-0169140_16	phrog_10469	110.9	1.1e-32	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0169140_16	UniRef90_A0A350TWM2	395.0	0	N/A	N/A
eggNOG-mapper	UHGV-0169140_16	742740.HMPREF9474_03492	95.5	1.3e-20	DnaD domain protein	N/A
Pfam	UHGV-0169140_16	PF19808	N/A	N/A	N/A	DUF6291
COG	UHGV-0169140_16	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
KOfam	UHGV-0169140_17	K02315	112.4	5e-33	dnaC; DNA replication protein DnaC	N/A
PHROG	UHGV-0169140_17	phrog_50	127.6	1.1e-37	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0169140_17	UniRef90_A0A396NX04	520.0	0	IstB_IS21 domain-containing protein	N/A
eggNOG-mapper	UHGV-0169140_17	445972.ANACOL_01829	230.0	0	N/A	N/A
Pfam	UHGV-0169140_17	PF01695	N/A	N/A	IstB-like ATP binding protein	IstB_IS21
COG	UHGV-0169140_17	COG1484	N/A	N/A	DNA replication protein DnaC	N/A
structural_annotation	UHGV-0169140_17	PF01695,MF_01158,NF005378,COG1484	N/A	N/A	N/A	N/A
KOfam	UHGV-0169140_18	K03111	136.4	3.20001e-40	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0169140_18	phrog_44	133.1	1.9e-39	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0169140_18	UniRef90_R5ADK0	273.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0169140_18	97138.C820_02339	206.0	0	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-0169140_18	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0169140_18	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0169140_18	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0169140_18	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0169140_18	PF00436,MF_00984,NF005579,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0169140_19	phrog_10714	54.9	0.0000000000000016	N/A	unknown function
UniRef90	UHGV-0169140_19	UniRef90_R5R2P7	83.2	1.27e-18	DNA polymerase II large subunit	N/A
eggNOG-mapper	UHGV-0169140_19	428127.EUBDOL_01238	98.6	1.45e-25	N/A	N/A
eggNOG-mapper	UHGV-0169140_20	397290.C810_01492	53.5	0.000000506	N/A	N/A
structural_annotation	UHGV-0169140_21	PF04448,NF041588	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0169140_22	1235799.C818_02666	80.5	3.01e-16	N/A	N/A
structural_annotation	UHGV-0169140_23	NF007260	N/A	N/A	N/A	N/A
PHROG	UHGV-0169140_24	phrog_2245	40.8	0.000000000037	nucleoside triphosphate pyrophosphohydrolase	other
UniRef90	UHGV-0169140_24	UniRef90_A0A1I0VIB3	75.1	0.00000000000000146	MazG nucleotide pyrophosphohydrolase domain-containing protein	N/A
structural_annotation	UHGV-0169140_24	PF11998,COG5420	N/A	N/A	N/A	N/A
PHROG	UHGV-0169140_25	phrog_36	75.9	5.8e-22	transcriptional regulator	transcription regulation
UniRef90	UHGV-0169140_25	UniRef90_A0A396PTA3	108.0	2.16e-27	N/A	N/A
eggNOG-mapper	UHGV-0169140_25	1235799.C818_04213	118.0	5.42e-32	sigma factor activity	N/A
COG	UHGV-0169140_25	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-0169140_25	PF07374,MF_00674,NF007227,COG1342	N/A	N/A	N/A	N/A
KOfam	UHGV-0169140_26	K00571	124.1	1.6e-36	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-0169140_26	phrog_498	445.2	0	DNA methyltransferase	other
UniRef90	UHGV-0169140_26	UniRef90_R5AIZ8	819.0	0	Methyltransferase	N/A
eggNOG-mapper	UHGV-0169140_26	1423758.BN55_01455	442.0	0	DNA methylase	N/A
PADLOC	UHGV-0169140_26	MTase_II_00015	372.7	0	Type II methyltransferase	RM
Pfam	UHGV-0169140_26	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
Pfam	UHGV-0169140_26	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-0169140_26	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-0169140_26	PF01555,PF02195,MF_02015,MF_01872,NF010253,TIGR04285,COG0863,COG1475	N/A	N/A	N/A	N/A
KOfam	UHGV-0169140_29	K06909	409.3	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0169140_29	phrog_3717	154.8	0	terminase large subunit	head and packaging
UniRef90	UHGV-0169140_29	UniRef90_R5AG08	837.0	0	Phage terminase	N/A
eggNOG-mapper	UHGV-0169140_29	411471.SUBVAR_06507	526.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0169140_29	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-0169140_29	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-0169140_29	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0169140_29	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0169140_29	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0169140_30	phrog_533	344.4	0	portal protein	head and packaging
UniRef90	UHGV-0169140_30	UniRef90_R5ADJ4	864.0	0	Phage minor capsid protein	N/A
eggNOG-mapper	UHGV-0169140_30	411490.ANACAC_00782	426.0	0	N/A	N/A
Pfam	UHGV-0169140_30	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0169140_30	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0169140_31	phrog_581	334.1	0	minor head protein	head and packaging
UniRef90	UHGV-0169140_31	UniRef90_R5AIZ3	1015.0	0	Minor capsid 2 protein	N/A
eggNOG-mapper	UHGV-0169140_31	645991.Sgly_0338	451.0	0	N/A	N/A
Pfam	UHGV-0169140_31	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0169140_31	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0169140_31	PF06152	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0169140_32	PF11344	N/A	N/A	N/A	N/A
PHROG	UHGV-0169140_33	phrog_15041	43.5	0.0000000000041	N/A	unknown function
eggNOG-mapper	UHGV-0169140_33	478749.BRYFOR_07608	48.9	0.00000396	N/A	N/A
PHROG	UHGV-0169140_35	phrog_422	249.4	0	major head protein	head and packaging
UniRef90	UHGV-0169140_35	UniRef90_W0U896	422.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0169140_35	1160721.RBI_II00538	422.0	0	N/A	N/A
structural_annotation	UHGV-0169140_35	PF21703,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
PHROG	UHGV-0169140_37	phrog_541	103.0	2.2e-30	head-tail adaptor	connector
eggNOG-mapper	UHGV-0169140_37	1120998.AUFC01000030_gene2237	105.0	4.46e-28	N/A	N/A
PHROG	UHGV-0169140_38	phrog_3366	58.8	6.9e-17	N/A	unknown function
Pfam	UHGV-0169140_38	PF20536	N/A	N/A	N/A	DUF6751
structural_annotation	UHGV-0169140_38	PF20536,COG1853	N/A	N/A	N/A	N/A
PHROG	UHGV-0169140_39	phrog_556	63.0	5.1e-18	minor head protein	head and packaging
UniRef90	UHGV-0169140_39	UniRef90_UPI000F63A4E5	127.0	3.01e-35	minor capsid protein	N/A
eggNOG-mapper	UHGV-0169140_39	903814.ELI_3205	59.3	0.000000000744	Minor capsid protein	N/A
Pfam	UHGV-0169140_39	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0169140_39	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-0169140_40	phrog_3266	126.9	9.2e-38	tail completion	connector
UniRef90	UHGV-0169140_40	UniRef90_A0A353IZQ8	179.0	0	Chloramphenicol resistance protein	N/A
eggNOG-mapper	UHGV-0169140_40	1280692.AUJL01000004_gene841	124.0	1.49e-34	N/A	N/A
structural_annotation	UHGV-0169140_40	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-0169140_41	phrog_3099	213.8	0	N/A	unknown function
UniRef90	UHGV-0169140_41	UniRef90_A0A0A8WE72	197.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0169140_41	903814.ELI_3202	194.0	0	N/A	N/A
structural_annotation	UHGV-0169140_41	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0169140_42	PF20378	N/A	N/A	N/A	N/A
PHROG	UHGV-0169140_43	phrog_706	155.6	0	N/A	unknown function
UniRef90	UHGV-0169140_43	UniRef90_UPI001D122605	164.0	0	bacteriophage Gp15 family protein	N/A
eggNOG-mapper	UHGV-0169140_43	642492.Clole_0828	129.0	7.76e-35	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0169140_43	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0169140_43	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0169140_44	phrog_6900	266.3	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0169140_44	536233.CLO_1577	331.0	0	tape measure	N/A
COG	UHGV-0169140_44	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
PHROG	UHGV-0169140_45	phrog_33	105.3	9.8e-31	distal tail protein Dit	tail
UniRef90	UHGV-0169140_45	UniRef90_R5ADI0	436.0	0	Putative phage tail component	N/A
eggNOG-mapper	UHGV-0169140_45	272562.CA_C0062	178.0	0	tail component	N/A
NCBIFam	UHGV-0169140_45	TIGR01633.1	N/A	N/A	distal tail protein Dit	N/A
COG	UHGV-0169140_45	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0169140_45	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0169140_46	phrog_863	91.4	1.8e-26	tail fiber assembly	tail
UniRef90	UHGV-0169140_46	UniRef90_A0A136WFR9	171.0	0	BppU_N domain-containing protein	N/A
eggNOG-mapper	UHGV-0169140_46	1321778.HMPREF1982_03560	69.7	0.000000000678	N/A	N/A
Pfam	UHGV-0169140_46	PF10651	N/A	N/A	BppU N-terminal domain	BppU_N
Pfam	UHGV-0169140_46	PF21722	N/A	N/A	Glycine-rich domain	Gly_rich_2
COG	UHGV-0169140_46	COG2755	N/A	N/A	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	N/A
structural_annotation	UHGV-0169140_46	PF10651,PF21722,NF032891,COG2372	N/A	N/A	N/A	N/A
PHROG	UHGV-0169140_48	phrog_2310	64.3	1e-18	N/A	unknown function
eggNOG-mapper	UHGV-0169140_48	1460635.JCM19038_2823	48.5	0.000000287	N/A	N/A
PHROG	UHGV-0169140_49	phrog_1067	276.3	0	minor head protein	head and packaging
UniRef90	UHGV-0169140_49	UniRef90_A0A396NSB6	700.0	0	Prophage_tail domain-containing protein	N/A
eggNOG-mapper	UHGV-0169140_49	1443125.Z962_07985	214.0	0	Prophage endopeptidase tail	N/A
Pfam	UHGV-0169140_49	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0169140_49	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0169140_49	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0169140_49	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0169140_50	phrog_937	54.7	0.000000000000002	hemolysin	other
eggNOG-mapper	UHGV-0169140_50	1519439.JPJG01000023_gene533	67.0	0.000000000000308	N/A	N/A
PHROG	UHGV-0169140_52	phrog_36029	131.4	4.9e-39	N/A	unknown function
UniRef90	UHGV-0169140_52	UniRef90_A0A318KD97	108.0	3.12e-28	Superfamily 6 holin (LLH)	N/A
eggNOG-mapper	UHGV-0169140_52	411468.CLOSCI_01511	127.0	1.18e-36	N/A	N/A
KOfam	UHGV-0169140_53	K21471	50.6	0.000000000000053	cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]	N/A
UniRef90	UHGV-0169140_53	UniRef90_A0A0X8VCT6	268.0	0	NlpC/P60 domain-containing protein	N/A
eggNOG-mapper	UHGV-0169140_53	411902.CLOBOL_04837	103.0	5.27e-23	Phage lysozyme	N/A
COG	UHGV-0169140_53	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
structural_annotation	UHGV-0169140_53	PF00877,PF01471,NF033743,COG0791	N/A	N/A	N/A	N/A
PHROG	UHGV-0169140_54	phrog_355	57.1	3.1e-16	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0169140_54	UniRef90_A0A415G5B2	145.0	2.56438e-43	N/A	N/A
eggNOG-mapper	UHGV-0169140_54	397290.C810_05229	139.0	9.0706e-42	N/A	N/A
Pfam	UHGV-0169140_54	PF14359	N/A	N/A	N/A	DUF4406
structural_annotation	UHGV-0169140_54	PF14359	N/A	N/A	N/A	N/A