UHGV-0172417 (vOTU-046452)

Viral Genome: UHGV-0172417

Genome Information

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Overview
UHGV ID	UHGV-0172417
vOTU ID	vOTU-046452
Representative Genome?	Yes
Source	GPD
Original Genome ID	uvig_566760
Associated Biosample	SAMN06233224
Viral Genome Confidence	Confident

Quality Assessment
CheckV Method	DTR
CheckV Completeness	100 (Complete)
Trimmed?	No
CheckV Viral Markers	13
CheckV Host Markers	0
Recoded?	No

Viral Content
geNomad score	0.9576
Viral Hallmark Genes (geNomad)	5
Plasmid Hallmark Genes (geNomad)	0
ViralVerify Prediction	Virus
ViralVerify Score	16.96
Jumbo Phage?	No

Genome Content
Length (bps)	55,279
GC Content	25.68%
Genetic Code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS Genes	80
CDS Density	93%
Average CDS Length (bps)	641.03
Total tRNA Genes	0
Suppressor tRNA Genes	0

Genome Content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0172417_6	phrog_3490	109.3	3.9e-32	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0172417_6	UniRef90_A0A3E5EK62	96.7	2.61e-22	ERCC4 domain-containing protein	N/A
eggNOG-mapper	UHGV-0172417_6	658655.HMPREF0988_02583	85.9	6.76e-19	ERCC4 domain	N/A
Pfam	UHGV-0172417_6	PF02732	N/A	N/A	ERCC4 domain	ERCC4
structural_annotation	UHGV-0172417_6	PF03834,NF040956,COG1948	N/A	N/A	N/A	N/A
KOfam	UHGV-0172417_7	K12574	60.1	2.5e-17	rnj; ribonuclease J [EC:3.1.-.-]	N/A
PHROG	UHGV-0172417_7	phrog_392	160.1	0	metal-dependent hydrolase	other
UniRef90	UHGV-0172417_7	UniRef90_A0A1I6SGB5	129.0	5.5e-33	Phosphoribosyl 1,2-cyclic phosphodiesterase	N/A
eggNOG-mapper	UHGV-0172417_7	1027292.HMPREF9372_3394	123.0	1.13e-31	Beta-lactamase superfamily domain	N/A
Pfam	UHGV-0172417_7	PF12706	N/A	N/A	Beta-lactamase superfamily domain	Lactamase_B_2
dbAPIS	UHGV-0172417_7	APIS058	N/A	N/A	N/A	N/A
COG	UHGV-0172417_7	COG1235	N/A	N/A	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	N/A
structural_annotation	UHGV-0172417_7	PF02112,MF_01818,NF041851,COG1234	N/A	N/A	N/A	N/A
PHROG	UHGV-0172417_8	phrog_561	173.1	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0172417_8	UniRef90_UPI001F3F277E	178.0	0	recombinase RecT	N/A
eggNOG-mapper	UHGV-0172417_8	537013.CLOSTMETH_01715	183.0	0	N/A	N/A
structural_annotation	UHGV-0172417_8	PF03837,TIGR01913,COG3723	N/A	N/A	N/A	N/A
KOfam	UHGV-0172417_10	K19171	54.9	0.0000000000000011	dndD; DNA sulfur modification protein DndD	N/A
PHROG	UHGV-0172417_10	phrog_77	105.3	5.3e-31	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
Pfam	UHGV-0172417_10	PF13476	N/A	N/A	AAA domain	AAA_23
COG	UHGV-0172417_10	COG3593	N/A	N/A	Predicted ATP-dependent endonuclease of the OLD family, contains P-loop ATPase and TOPRIM domains	N/A
structural_annotation	UHGV-0172417_10	PF02463,MF_00449,NF041034,COG0419	N/A	N/A	N/A	N/A
Pfam	UHGV-0172417_11	PF04014	N/A	N/A	Antidote-toxin recognition MazE, bacterial antitoxin	MazE_antitoxin
PHROG	UHGV-0172417_13	phrog_3754	51.1	0.0000000000000012	N/A	unknown function
eggNOG-mapper	UHGV-0172417_13	1226322.HMPREF1545_00073	67.0	0.00000000000126	N/A	N/A
UniRef90	UHGV-0172417_15	UniRef90_A0A345BNU6	180.0	0	Spore surface glycoprotein	N/A
structural_annotation	UHGV-0172417_15	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-0172417_16	phrog_16490	155.3	0	N/A	unknown function
eggNOG-mapper	UHGV-0172417_16	1408437.JNJN01000043_gene803	94.0	2.21e-20	N/A	N/A
PHROG	UHGV-0172417_18	phrog_21718	54.1	0.0000000000000021	N/A	unknown function
eggNOG-mapper	UHGV-0172417_18	397290.C810_05210	55.8	0.000000221	N/A	N/A
Pfam	UHGV-0172417_19	PF04647	N/A	N/A	Accessory gene regulator B	AgrB
PHROG	UHGV-0172417_25	phrog_38707	57.0	1.1e-16	N/A	unknown function
eggNOG-mapper	UHGV-0172417_25	552398.HMPREF0866_01593	69.7	0.000000000713	tail collar domain protein	N/A
COG	UHGV-0172417_25	COG4675	N/A	N/A	Phage tail collar domain	N/A
PHROG	UHGV-0172417_27	phrog_18725	40.2	0.000000000042	N/A	unknown function
PHROG	UHGV-0172417_28	phrog_13879	163.1	0	N/A	unknown function
eggNOG-mapper	UHGV-0172417_28	1232449.BAHV02000010_gene2725	86.7	0.00000000000000569	N/A	N/A
structural_annotation	UHGV-0172417_28	PF14594,PF03256,NF033848,COG4379,COG5156	N/A	N/A	N/A	N/A
PHROG	UHGV-0172417_29	phrog_1194	75.3	5.1e-22	N/A	unknown function
PHROG	UHGV-0172417_30	phrog_1535	69.2	3e-28	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0172417_30	428127.EUBDOL_01563	174.0	3.07024e-42	homoserine transmembrane transporter activity	N/A
COG	UHGV-0172417_30	COG1280	N/A	N/A	Threonine/homoserine/homoserine lactone efflux protein	N/A
structural_annotation	UHGV-0172417_33	PF16463,PF17892,MF_04116,TIGR02241,NF012211,COG5437	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0172417_34	PF08873,COG5003	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0172417_35	TIGR01725	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0172417_37	PF19586,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0172417_39	phrog_29	194.6	0	major head protein	head and packaging
UniRef90	UHGV-0172417_39	UniRef90_A0A1R1C563	224.0	0	Phage capsid protein	N/A
eggNOG-mapper	UHGV-0172417_39	1296659.S5MNB6_9CAUD	216.0	0	Phage major capsid protein E	N/A
Pfam	UHGV-0172417_39	PF03864	N/A	N/A	Phage major capsid protein E	Phage_cap_E
structural_annotation	UHGV-0172417_39	PF03864,MF_04133,NF041162,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0172417_40	phrog_909	65.6	8.2e-19	major head protein	head and packaging
UniRef90	UHGV-0172417_40	UniRef90_A0A098MDH2	71.2	0.000000000000227	N/A	N/A
eggNOG-mapper	UHGV-0172417_40	1158607.UAU_01759	77.8	1.38e-16	N/A	N/A
structural_annotation	UHGV-0172417_40	PF02924	N/A	N/A	N/A	N/A
PHROG	UHGV-0172417_41	phrog_172	48.5	0.00000000000018	head scaffolding protein	head and packaging
PHROG	UHGV-0172417_42	phrog_64	119.4	2.7e-35	portal protein	head and packaging
UniRef90	UHGV-0172417_42	UniRef90_UPI001BAAB616	184.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0172417_42	1232453.BAIF02000058_gene1625	164.0	7.12e-42	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0172417_42	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0172417_42	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0172417_43	phrog_38	102.6	3.5e-30	terminase large subunit	head and packaging
eggNOG-mapper	UHGV-0172417_43	428127.EUBDOL_01551	107.0	8.75e-23	chromosome segregation	N/A
COG	UHGV-0172417_43	COG5410	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0172417_43	PF17289,MF_04147,NF033889,COG5410,COG5362	N/A	N/A	N/A	N/A
KOfam	UHGV-0172417_51	K00571	114.1	1.8e-33	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-0172417_51	phrog_67	103.4	1.1e-31	DNA methyltransferase	other
UniRef90	UHGV-0172417_51	UniRef90_A0A123SP57	372.0	0	Methyltransferase	N/A
eggNOG-mapper	UHGV-0172417_51	1123315.AUIP01000014_gene1936	377.0	0	DNA modification methylase DNA replication, recombination, and repair	N/A
PADLOC	UHGV-0172417_51	MTase_II_00157	103.3	3.4e-31	Type II methyltransferase	RM
Pfam	UHGV-0172417_51	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-0172417_51	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-0172417_51	PF01555,MF_01872,NF010253,COG0863	N/A	N/A	N/A	N/A
UniRef90	UHGV-0172417_54	UniRef90_A0A349ETZ1	392.0	0	Restriction endonuclease subunit M (Fragment)	N/A
eggNOG-mapper	UHGV-0172417_54	1122981.AUME01000001_gene1820	341.0	0	restriction	N/A
PADLOC	UHGV-0172417_54	MTase_II_00176	390.8	0	Type II methyltransferase	RM
COG	UHGV-0172417_54	COG1002	N/A	N/A	Type II restriction/modification system, endonuclease and methylase domains	N/A
KOfam	UHGV-0172417_57	K03111	85.0	1.7e-24	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0172417_57	phrog_44	94.0	2.4e-27	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0172417_57	UniRef90_W7KN38	92.8	1.82e-21	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0172417_57	1307436.PBF_22013	92.8	3.05e-22	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-0172417_57	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0172417_57	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0172417_57	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0172417_57	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0172417_58	phrog_8470	75.6	1.5e-23	N/A	unknown function
UniRef90	UHGV-0172417_58	UniRef90_A0A1H9B2X1	190.0	0	PcfJ-like protein	N/A
eggNOG-mapper	UHGV-0172417_58	1395513.P343_08070	67.8	0.00000000227	PcfJ-like protein	N/A
Pfam	UHGV-0172417_58	PF14284	N/A	N/A	PcfJ-like protein	PcfJ
structural_annotation	UHGV-0172417_58	PF14284	N/A	N/A	N/A	N/A
PHROG	UHGV-0172417_59	phrog_7445	47.6	0.00000000000036	N/A	unknown function
UniRef90	UHGV-0172417_59	UniRef90_A0A1T4KJD9	87.4	1.42e-19	PcfK-like protein	N/A
eggNOG-mapper	UHGV-0172417_59	742727.HMPREF9447_04085	78.6	9.99e-17	PcfK-like protein	N/A
Pfam	UHGV-0172417_59	PF14058	N/A	N/A	PcfK-like protein	PcfK
structural_annotation	UHGV-0172417_59	PF14058	N/A	N/A	N/A	N/A
KOfam	UHGV-0172417_60	K14060	96.1	5.1e-28	pinR; putative DNA-invertase from lambdoid prophage Rac	N/A
PHROG	UHGV-0172417_60	phrog_125	154.0	0	DNA invertase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0172417_60	UniRef90_A0A7X9A543	179.0	0	Recombinase family protein	N/A
eggNOG-mapper	UHGV-0172417_60	1278311.AUAL01000011_gene747	168.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-0172417_60	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
COG	UHGV-0172417_60	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
KOfam	UHGV-0172417_63	K02315	90.5	2.2e-26	dnaC; DNA replication protein DnaC	N/A
PHROG	UHGV-0172417_63	phrog_50	93.1	4.2e-27	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0172417_63	UniRef90_A0A374UPV4	118.0	5.45e-28	Bac_DnaA domain-containing protein	N/A
eggNOG-mapper	UHGV-0172417_63	1232446.BAIE02000011_gene1611	104.0	5.9e-24	N/A	N/A
Pfam	UHGV-0172417_63	PF00308	N/A	N/A	Bacterial dnaA protein	Bac_DnaA
COG	UHGV-0172417_63	COG1484	N/A	N/A	DNA replication protein DnaC	N/A
structural_annotation	UHGV-0172417_63	PF01695,MF_01158,NF005378,COG1484	N/A	N/A	N/A	N/A
PHROG	UHGV-0172417_68	phrog_2044	87.9	6.7e-26	RNA polymerase beta subunit	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0172417_68	UniRef90_A0A2X0YZP6	68.9	0.000000000000153	N/A	N/A
eggNOG-mapper	UHGV-0172417_68	552396.HMPREF0863_00288	74.7	1.43e-16	N/A	N/A
structural_annotation	UHGV-0172417_68	MF_00337,NF010671,COG1722	N/A	N/A	N/A	N/A
PHROG	UHGV-0172417_69	phrog_1891	116.3	2.4e-39	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0172417_69	UniRef90_UPI00164BEE6F	109.0	3.32e-25	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0172417_69	1321779.HMPREF1984_01330	103.0	6.37e-24	HNH endonuclease	N/A
Pfam	UHGV-0172417_69	PF13392	N/A	N/A	HNH endonuclease	HNH_3
structural_annotation	UHGV-0172417_69	PF13392	N/A	N/A	N/A	N/A
PADLOC	UHGV-0172417_70	pVip-lone	48.4	0.00000000000024	Viperins not associated with kinases	Viperin
Pfam	UHGV-0172417_70	PF04055	N/A	N/A	Radical SAM superfamily	Radical_SAM
COG	UHGV-0172417_70	COG1180	N/A	N/A	Pyruvate-formate lyase-activating enzyme	N/A
eggNOG-mapper	UHGV-0172417_74	1118057.CAGX01000020_gene1638	63.9	0.0000000000225	N/A	N/A
UniRef90	UHGV-0172417_77	UniRef90_A0A843GST0	54.7	0.00000652	ASCH domain-containing protein	N/A
KOfam	UHGV-0172417_78	K21919	100.4	1.8e-29	KCTD9; BTB/POZ domain-containing protein KCTD9	N/A
PHROG	UHGV-0172417_78	phrog_923	101.1	5.7e-30	N/A	unknown function
Pfam	UHGV-0172417_78	PF00805	N/A	N/A	Pentapeptide repeats (8 copies)	Pentapeptide
Pfam	UHGV-0172417_78	PF19062	N/A	N/A	N/A	DUF5758
structural_annotation	UHGV-0172417_78	PF19062,PF13599,NF011744,COG1357	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0172417_79	242527.Q6V7R6_9CAUD	72.8	0.00000000000539	calcium ion binding	N/A
KOfam	UHGV-0172417_80	K02338	42.6	0.000000000009	dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]	N/A