UHGV-0173597 (vOTU-028693)

Viral Genome: UHGV-0173597

Genome Information

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Overview
UHGV ID	UHGV-0173597
vOTU ID	vOTU-028693
Representative Genome?	Yes
Source	GPD
Original Genome ID	uvig_590732
Associated Biosample	SAMN09781782
Viral Genome Confidence	Confident

Quality Assessment
CheckV Method	AAI-based
CheckV Completeness	60.09 (Medium-quality)
Trimmed?	No
CheckV Viral Markers	8
CheckV Host Markers	0
Recoded?	No

Viral Content
geNomad score	0.9804
Viral Hallmark Genes (geNomad)	6
Plasmid Hallmark Genes (geNomad)	0
ViralVerify Prediction	Virus
ViralVerify Score	21.1
Jumbo Phage?	No

Genome Content
Length (bps)	26,594
GC Content	61.74%
Genetic Code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS Genes	44
CDS Density	91%
Average CDS Length (bps)	548.05
Total tRNA Genes	0
Suppressor tRNA Genes	0

Genome Content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 60.09)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0173597_2	K22300	47.8	0.00000000000034	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
UniRef90	UHGV-0173597_2	UniRef90_A0A844DFR0	104.0	1.91e-26	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0173597_2	748224.HMPREF9436_01444	97.8	3.18e-24	N/A	N/A
Pfam	UHGV-0173597_2	PF13560	N/A	N/A	Helix-turn-helix domain	HTH_31
COG	UHGV-0173597_2	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0173597_2	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0173597_5	MF_00273	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0173597_12	PF07039	N/A	N/A	N/A	N/A
UniRef90	UHGV-0173597_14	UniRef90_A0A098GES5	95.9	7.89e-24	Putative phage associated protein	N/A
structural_annotation	UHGV-0173597_14	PF01423,MF_00257,NF001963,COG1958	N/A	N/A	N/A	N/A
PHROG	UHGV-0173597_16	phrog_23265	51.4	0.000000000000008	N/A	unknown function
COG	UHGV-0173597_16	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
structural_annotation	UHGV-0173597_16	NF007410	N/A	N/A	N/A	N/A
PHROG	UHGV-0173597_17	phrog_355	65.2	7.9e-19	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0173597_17	UniRef90_A0A2V2FSM6	80.9	2.28e-17	Nucleoside 2-deoxyribosyltransferase	N/A
eggNOG-mapper	UHGV-0173597_17	40631.O64365_BPN15	72.0	0.0000000000000103	N/A	N/A
Pfam	UHGV-0173597_17	PF14359	N/A	N/A	N/A	DUF4406
structural_annotation	UHGV-0173597_17	PF14359,MF_03036,TIGR02133,COG3613	N/A	N/A	N/A	N/A
KOfam	UHGV-0173597_18	K00571	82.2	6.5e-24	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-0173597_18	phrog_67	68.4	1.4e-26	DNA methyltransferase	other
UniRef90	UHGV-0173597_18	UniRef90_A0A8D9PDC5	282.0	0	Adenine specific DNA methyltransferase	N/A
eggNOG-mapper	UHGV-0173597_18	1268240.ATFI01000007_gene431	177.0	0	DNA methylase	N/A
PADLOC	UHGV-0173597_18	MTase_II_00172	124.5	1.1e-36	Type II methyltransferase	RM
Pfam	UHGV-0173597_18	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-0173597_18	COG0863	N/A	N/A	DNA modification methylase	N/A
PHROG	UHGV-0173597_19	phrog_918	122.5	1.3e-36	N/A	unknown function
UniRef90	UHGV-0173597_19	UniRef90_UPI00115A7D93	135.0	6.55001e-40	N/A	N/A
eggNOG-mapper	UHGV-0173597_19	469618.FVAG_01307	132.0	2.44e-39	N/A	N/A
Pfam	UHGV-0173597_19	PF19791	N/A	N/A	N/A	DUF6275
structural_annotation	UHGV-0173597_19	PF19791	N/A	N/A	N/A	N/A
PHROG	UHGV-0173597_20	phrog_9298	78.0	9.3e-23	radical SAM domain protein	other
UniRef90	UHGV-0173597_20	UniRef90_H1CCS3	258.0	0	Elp3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0173597_20	742817.HMPREF9449_01796	258.0	0	radical SAM domain protein	N/A
COG	UHGV-0173597_20	COG1032	N/A	N/A	Radical SAM superfamily enzyme YgiQ, UPF0313 family	N/A
structural_annotation	UHGV-0173597_20	PF04055,MF_01864,TIGR04072,COG0621	N/A	N/A	N/A	N/A
COG	UHGV-0173597_24	COG2944	N/A	N/A	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	N/A
PHROG	UHGV-0173597_26	phrog_3584	108.2	7.9e-32	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0173597_26	1226322.HMPREF1545_03841	126.0	2.76e-32	N/A	N/A
structural_annotation	UHGV-0173597_26	PF01446,NF041486	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0173597_27	1226322.HMPREF1545_00288	51.2	0.000000486	N/A	N/A
Pfam	UHGV-0173597_27	PF05225	N/A	N/A	helix-turn-helix, Psq domain	HTH_psq
PHROG	UHGV-0173597_28	phrog_606	57.1	1.4e-16	terminase small subunit	head and packaging
eggNOG-mapper	UHGV-0173597_28	1226322.HMPREF1545_03842	88.6	2.51e-19	DNA-packaging protein gp3	N/A
Pfam	UHGV-0173597_28	PF16677	N/A	N/A	DNA-packaging protein gp3	GP3_package
structural_annotation	UHGV-0173597_28	PF16677	N/A	N/A	N/A	N/A
KOfam	UHGV-0173597_29	K16628	87.5	5.4e-26	COL7A; collagen type VII alpha	N/A
PHROG	UHGV-0173597_29	phrog_5073	159.6	0	tail fiber protein	tail
Pfam	UHGV-0173597_29	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
PHROG	UHGV-0173597_30	phrog_30034	113.6	2.3e-33	N/A	unknown function
UniRef90	UHGV-0173597_30	UniRef90_A0A3D1XGA4	223.0	0	Chitin-binding type-3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0173597_30	1235796.C815_00903	63.2	0.000000000858	N/A	N/A
Pfam	UHGV-0173597_30	PF02839	N/A	N/A	Carbohydrate-binding module family 5/12	CBM_5_12
PHROG	UHGV-0173597_32	phrog_355	59.2	7.7e-17	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0173597_32	UniRef90_A0A3R6IMQ7	111.0	1.09e-29	N/A	N/A
eggNOG-mapper	UHGV-0173597_32	97138.C820_00250	102.0	7.65e-27	N/A	N/A
Pfam	UHGV-0173597_32	PF14359	N/A	N/A	N/A	DUF4406
structural_annotation	UHGV-0173597_32	PF14359,COG3613	N/A	N/A	N/A	N/A
KOfam	UHGV-0173597_33	K01447	57.1	3.9e-16	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0173597_33	phrog_15001	161.6	0	endolysin	lysis
UniRef90	UHGV-0173597_33	UniRef90_A0A7X7U879	201.0	0	LysM peptidoglycan-binding domain-containing protein	N/A
eggNOG-mapper	UHGV-0173597_33	1235835.C814_01292	209.0	0	Ami_2	N/A
Pfam	UHGV-0173597_33	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
Pfam	UHGV-0173597_33	PF08239	N/A	N/A	Bacterial SH3 domain	SH3_3
COG	UHGV-0173597_33	COG1388	N/A	N/A	LysM repeat	N/A
structural_annotation	UHGV-0173597_33	PF18342,PF01510,NF041850,COG5632	N/A	N/A	N/A	N/A
PHROG	UHGV-0173597_34	phrog_937	54.0	0.0000000000000038	hemolysin	other
eggNOG-mapper	UHGV-0173597_34	1519439.JPJG01000023_gene533	67.4	0.000000000000308	N/A	N/A
PHROG	UHGV-0173597_35	phrog_443	58.7	1.8e-16	holin	lysis
UniRef90	UHGV-0173597_35	UniRef90_UPI0002E2AC7F	96.7	4.69e-25	holin	N/A
eggNOG-mapper	UHGV-0173597_35	1235800.C819_01425	87.8	4.45e-22	Putative lactococcus lactis phage r1t holin	N/A
Pfam	UHGV-0173597_35	PF16945	N/A	N/A	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
structural_annotation	UHGV-0173597_35	PF16945	N/A	N/A	N/A	N/A
PHROG	UHGV-0173597_37	phrog_35275	170.6	0	N/A	unknown function
eggNOG-mapper	UHGV-0173597_37	1226322.HMPREF1545_03846	136.0	9.47e-35	N/A	N/A
PHROG	UHGV-0173597_38	phrog_24113	103.0	1.9e-30	N/A	unknown function
eggNOG-mapper	UHGV-0173597_38	1226322.HMPREF1545_03847	88.6	1.54e-20	N/A	N/A
structural_annotation	UHGV-0173597_38	PF11133,COG5471	N/A	N/A	N/A	N/A
PHROG	UHGV-0173597_39	phrog_371	99.4	4.1e-29	major head protein	head and packaging
UniRef90	UHGV-0173597_39	UniRef90_A0A8F2JBL2	228.0	0	Mu-like prophage major head subunit gpT family protein	N/A
eggNOG-mapper	UHGV-0173597_39	1226322.HMPREF1545_03848	268.0	0	N/A	N/A
Pfam	UHGV-0173597_39	PF10124	N/A	N/A	Mu-like prophage major head subunit gpT	Mu-like_gpT
structural_annotation	UHGV-0173597_39	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-0173597_40	K06909	210.1	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0173597_40	phrog_3717	186.8	0	terminase large subunit	head and packaging
UniRef90	UHGV-0173597_40	UniRef90_UPI001105ADB4	590.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0173597_40	1226322.HMPREF1545_03843	563.0	0	phage Terminase large subunit	N/A
Pfam	UHGV-0173597_40	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
NCBIFam	UHGV-0173597_40	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0173597_40	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0173597_40	PF04466,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0173597_42	phrog_511	140.9	7.79963e-42	internal virion protein	head and packaging
eggNOG-mapper	UHGV-0173597_42	1519439.JPJG01000060_gene1903	306.0	0	N/A	N/A
structural_annotation	UHGV-0173597_42	PF11134,TIGR03300,NF038126,COG1520	N/A	N/A	N/A	N/A
PHROG	UHGV-0173597_43	phrog_156	192.6	0	portal protein	head and packaging
eggNOG-mapper	UHGV-0173597_43	1519439.JPJG01000060_gene1886	504.0	0	N/A	N/A
structural_annotation	UHGV-0173597_43	PF16510,MF_04120,TIGR01542,COG4695	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0173597_44	1203606.HMPREF1526_02741	55.8	0.000000204	N/A	N/A