UHGV-0175587 (vOTU-067445)

Viral Genome: UHGV-0175587

Genome Information

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Overview
UHGV ID	UHGV-0175587
vOTU ID	vOTU-067445
Representative Genome?	Yes
Source	GPD
Original Genome ID	uvig_582565
Associated Biosample	SAMN09781780
Viral Genome Confidence	Confident

Quality Assessment
CheckV Method	AAI-based
CheckV Completeness	97.34 (High-quality)
Trimmed?	No
CheckV Viral Markers	7
CheckV Host Markers	0
Recoded?	No

Viral Content
geNomad score	0.9801
Viral Hallmark Genes (geNomad)	4
Plasmid Hallmark Genes (geNomad)	0
ViralVerify Prediction	Uncertain - viral or bacterial
ViralVerify Score	0.6
Jumbo Phage?	No

Genome Content
Length (bps)	39,116
GC Content	50.16%
Genetic Code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS Genes	54
CDS Density	91%
Average CDS Length (bps)	662.06
Total tRNA Genes	3
Suppressor tRNA Genes	0

Genome Content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 97.34)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0175587_1	phrog_1770	51.4	0.00000000000002	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0175587_1	536233.CLO_1822	144.0	2.79993e-41	N/A	N/A
PHROG	UHGV-0175587_2	phrog_2245	88.2	9.4e-26	nucleoside triphosphate pyrophosphohydrolase	other
eggNOG-mapper	UHGV-0175587_2	706433.HMPREF9430_01279	72.0	0.00000000000000521	N/A	N/A
Pfam	UHGV-0175587_3	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
PHROG	UHGV-0175587_4	phrog_25567	52.1	0.0000000000000097	N/A	unknown function
UniRef90	UHGV-0175587_4	UniRef90_UPI00164AED9E	117.0	8.8e-32	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0175587_4	1384065.JAGS01000001_gene3265	52.0	0.000000185	sequence-specific DNA binding	N/A
COG	UHGV-0175587_4	COG2944	N/A	N/A	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	N/A
structural_annotation	UHGV-0175587_4	NF040522,COG2944	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0175587_5	TIGR03826	N/A	N/A	N/A	N/A
KOfam	UHGV-0175587_10	K06909	150.7	1.26117e-44	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0175587_10	phrog_979	132.0	1.3e-40	terminase large subunit	head and packaging
UniRef90	UHGV-0175587_10	UniRef90_A0A810QAS9	548.0	0	Phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0175587_10	693746.OBV_01690	538.0	0	phage Terminase large subunit	N/A
Pfam	UHGV-0175587_10	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
COG	UHGV-0175587_10	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0175587_10	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0175587_11	1519439.JPJG01000011_gene57	110.0	3.26e-29	N/A	N/A
structural_annotation	UHGV-0175587_11	PF11650	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0175587_12	PF18152	N/A	N/A	N/A	N/A
PHROG	UHGV-0175587_13	phrog_14606	45.4	0.00000000000096	N/A	unknown function
eggNOG-mapper	UHGV-0175587_13	755731.Clo1100_2435	82.0	0.00000000000000377	N/A	N/A
PHROG	UHGV-0175587_14	phrog_422	128.6	5e-38	major head protein	head and packaging
UniRef90	UHGV-0175587_14	UniRef90_A0A6A8VJ17	330.0	0	N4-gp56 family major capsid protein	N/A
eggNOG-mapper	UHGV-0175587_14	1408437.JNJN01000001_gene1710	224.0	0	N/A	N/A
Pfam	UHGV-0175587_14	PF13290	N/A	N/A	Chitobiase/beta-hexosaminidase C-terminal domain	CHB_HEX_C_1
structural_annotation	UHGV-0175587_14	PF19821,PF13287,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
UniRef90	UHGV-0175587_15	UniRef90_A0A4D7ASB8	504.0	0	N/A	N/A
eggNOG-mapper	UHGV-0175587_15	693746.OBV_01680	508.0	0	N/A	N/A
structural_annotation	UHGV-0175587_15	PF11134,MF_03027,NF010237,TIGR03511,COG2319	N/A	N/A	N/A	N/A
PHROG	UHGV-0175587_17	phrog_156	131.3	5.2e-39	portal protein	head and packaging
eggNOG-mapper	UHGV-0175587_17	693746.OBV_01670	613.0	0	N/A	N/A
structural_annotation	UHGV-0175587_17	PF16510,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0175587_18	1408437.JNJN01000087_gene969	60.5	0.0000000368	N/A	N/A
eggNOG-mapper	UHGV-0175587_20	693746.OBV_01600	69.3	0.000000000871	N/A	N/A
UniRef90	UHGV-0175587_21	UniRef90_A0A845QMU2	248.0	0	PBECR3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0175587_21	1408437.JNJN01000060_gene452	376.0	0	heme binding	N/A
Pfam	UHGV-0175587_21	PF18812	N/A	N/A	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease3	PBECR3
COG	UHGV-0175587_21	COG0503	N/A	N/A	Adenine/guanine phosphoribosyltransferase or related PRPP-binding protein	N/A
eggNOG-mapper	UHGV-0175587_22	1121866.AUGK01000006_gene893	83.6	0.0000000000000322	N/A	N/A
PHROG	UHGV-0175587_23	phrog_37900	300.1	0	N/A	unknown function
UniRef90	UHGV-0175587_23	UniRef90_UPI001C3EA4DF	392.0	0	N/A	N/A
eggNOG-mapper	UHGV-0175587_23	552398.HMPREF0866_03098	230.0	0	N/A	N/A
Pfam	UHGV-0175587_23	PF19789	N/A	N/A	N/A	DUF6273
COG	UHGV-0175587_23	COG3827	N/A	N/A	Cell pole-organizing protein PopZ	N/A
structural_annotation	UHGV-0175587_23	PF19789	N/A	N/A	N/A	N/A
PHROG	UHGV-0175587_24	phrog_29409	43.0	0.0000000000057	N/A	unknown function
UniRef90	UHGV-0175587_28	UniRef90_A0A1Y4UW55	120.0	1.08e-33	Branched-chain amino acid ABC transporter permease	N/A
eggNOG-mapper	UHGV-0175587_28	742765.HMPREF9457_03364	94.0	5.64e-24	N/A	N/A
PHROG	UHGV-0175587_30	phrog_13256	59.9	2.8e-17	N/A	unknown function
eggNOG-mapper	UHGV-0175587_30	428125.CLOLEP_01907	73.2	2.92e-16	N/A	N/A
UniRef90	UHGV-0175587_31	UniRef90_A0A358M2Y7	229.0	0	PG_binding_1 domain-containing protein	N/A
eggNOG-mapper	UHGV-0175587_31	525254.HMPREF0072_1273	226.0	0	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	N/A
COG	UHGV-0175587_31	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
structural_annotation	UHGV-0175587_31	NF033743	N/A	N/A	N/A	N/A
UniRef90	UHGV-0175587_32	UniRef90_A0A1C6JAI6	66.2	0.00000000000144	RNA polymerase sigma factor, sigma-70 family	N/A
structural_annotation	UHGV-0175587_32	PF16509,MF_00245,NF001066,COG2739	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0175587_35	PF18573,NF033147	N/A	N/A	N/A	N/A
UniRef90	UHGV-0175587_36	UniRef90_A0A8F0WD75	75.1	0.0000000000000929	RNA polymerase sigma factor/Ubiquitin-like protein	N/A
eggNOG-mapper	UHGV-0175587_36	1408437.JNJN01000043_gene801	81.3	7.57e-17	N/A	N/A
KOfam	UHGV-0175587_37	K14059	125.0	1.1e-36	int; integrase	N/A
PHROG	UHGV-0175587_37	phrog_1	144.0	1.3004e-42	integrase	integration and excision
UniRef90	UHGV-0175587_37	UniRef90_A0A2Z4QB94	313.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-0175587_37	641112.ACOK01000111_gene1860	117.0	3.04e-27	Phage integrase family	N/A
Pfam	UHGV-0175587_37	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0175587_37	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0175587_37	PF00589,PF12167,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A
Pfam	UHGV-0175587_38	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-0175587_38	PF01381,MF_02017,TIGR03070,COG3655	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0175587_39	1408323.JQKK01000014_gene78	90.5	4.34e-19	DNA/RNA non-specific endonuclease	N/A
COG	UHGV-0175587_39	COG2169	N/A	N/A	Methylphosphotriester-DNA--protein-cysteine methyltransferase (N-terminal fragment of Ada), contains Zn-binding and two AraC-type DNA-binding domains	N/A
structural_annotation	UHGV-0175587_39	PF02805	N/A	N/A	N/A	N/A
PHROG	UHGV-0175587_41	phrog_8	43.9	0.0000000000052	transcriptional regulator	transcription regulation
UniRef90	UHGV-0175587_41	UniRef90_R5HIC1	81.3	1.13e-16	Helix-turn-helix domain protein	N/A
eggNOG-mapper	UHGV-0175587_41	1378168.N510_01712	73.2	0.0000000000000373	N/A	N/A
Pfam	UHGV-0175587_41	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0175587_41	PF08667,NF041951,COG3655	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0175587_42	PF21291,TIGR03070,COG3655	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0175587_44	PF09943	N/A	N/A	N/A	N/A
PHROG	UHGV-0175587_45	phrog_434	320.3	0	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0175587_45	UniRef90_A0A1Y4W4B5	417.0	0	YqaJ domain-containing protein	N/A
eggNOG-mapper	UHGV-0175587_45	428125.CLOLEP_01823	331.0	0	YqaJ viral recombinase family	N/A
Pfam	UHGV-0175587_45	PF09588	N/A	N/A	YqaJ-like viral recombinase domain	YqaJ
NCBIFam	UHGV-0175587_45	TIGR03033.1	N/A	N/A	putative phage-type endonuclease	N/A
COG	UHGV-0175587_45	COG5377	N/A	N/A	Phage-related protein, predicted endonuclease	N/A
structural_annotation	UHGV-0175587_45	PF09588,MF_03030,TIGR03033,COG5377	N/A	N/A	N/A	N/A
PHROG	UHGV-0175587_46	phrog_374	203.2	0	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0175587_46	UniRef90_A0A0M2NHZ6	178.0	0	N/A	N/A
eggNOG-mapper	UHGV-0175587_46	411462.DORLON_00791	172.0	0	N/A	N/A
structural_annotation	UHGV-0175587_46	PF17375	N/A	N/A	N/A	N/A
KOfam	UHGV-0175587_47	K07455	172.0	0	recT; recombination protein RecT	N/A
PHROG	UHGV-0175587_47	phrog_148	174.5	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0175587_47	UniRef90_UPI0018C50A8E	325.0	0	recombinase RecT	N/A
eggNOG-mapper	UHGV-0175587_47	1196028.ALEF01000043_gene487	213.0	0	RecT family	N/A
Pfam	UHGV-0175587_47	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-0175587_47	TIGR00616.1	N/A	N/A	recombinase, phage RecT family	N/A
COG	UHGV-0175587_47	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
structural_annotation	UHGV-0175587_47	PF03837,TIGR00616,COG3723	N/A	N/A	N/A	N/A
KOfam	UHGV-0175587_48	K03111	127.6	1.6e-37	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0175587_48	phrog_44	133.6	1.5e-39	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0175587_48	UniRef90_R6LVK0	174.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0175587_48	1226322.HMPREF1545_04080	163.0	0	Single-strand binding protein family	N/A
Pfam	UHGV-0175587_48	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0175587_48	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0175587_48	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0175587_48	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0175587_48	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0175587_49	phrog_15768	58.7	2.5e-17	N/A	unknown function
eggNOG-mapper	UHGV-0175587_49	1121344.JHZO01000003_gene982	66.2	0.00000000034	N/A	N/A
Pfam	UHGV-0175587_49	PF19808	N/A	N/A	N/A	DUF6291
structural_annotation	UHGV-0175587_49	PF19808	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0175587_51	1232449.BAHV02000018_gene1537	123.0	2.55e-34	N/A	N/A
PHROG	UHGV-0175587_52	phrog_3136	122.5	1.9e-36	N/A	unknown function
UniRef90	UHGV-0175587_52	UniRef90_A0A329TS47	108.0	3.16e-26	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-0175587_52	1235793.C809_02645	55.8	0.000000819	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	N/A
COG	UHGV-0175587_52	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
structural_annotation	UHGV-0175587_52	PF08819,MF_00684,NF008917,COG4933	N/A	N/A	N/A	N/A