UHGV-0177722 (vOTU-004969)

Viral Genome: UHGV-0177722

Genome Information

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Overview
UHGV ID	UHGV-0177722
vOTU ID	vOTU-004969
Representative Genome?	Yes
Source	GPD
Original Genome ID	uvig_584261
Associated Biosample	N/A
Viral Genome Confidence	Confident

Quality Assessment
CheckV Method	DTR
CheckV Completeness	100 (Complete)
Trimmed?	No
CheckV Viral Markers	9
CheckV Host Markers	0
Recoded?	No

Viral Content
geNomad score	0.9826
Viral Hallmark Genes (geNomad)	6
Plasmid Hallmark Genes (geNomad)	0
ViralVerify Prediction	Virus
ViralVerify Score	23.53
Jumbo Phage?	No

Genome Content
Length (bps)	41,965
GC Content	58.87%
Genetic Code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS Genes	56
CDS Density	93%
Average CDS Length (bps)	697.55
Total tRNA Genes	0
Suppressor tRNA Genes	0

Genome Content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0177722_2	phrog_2245	84.9	9.2e-25	nucleoside triphosphate pyrophosphohydrolase	other
UniRef90	UHGV-0177722_2	UniRef90_A0A4U9RLZ8	63.9	0.000000000233	N/A	N/A
eggNOG-mapper	UHGV-0177722_2	428125.CLOLEP_01814	62.0	0.000000000607	COG NOG14118 non supervised orthologous group	N/A
structural_annotation	UHGV-0177722_2	PF08271	N/A	N/A	N/A	N/A
PHROG	UHGV-0177722_3	phrog_3584	112.7	2.7e-33	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0177722_3	642492.Clole_0725	65.1	0.00000000112	N/A	N/A
structural_annotation	UHGV-0177722_3	PF21578,MF_00360	N/A	N/A	N/A	N/A
PHROG	UHGV-0177722_4	phrog_606	69.0	8.1e-20	terminase small subunit	head and packaging
UniRef90	UHGV-0177722_4	UniRef90_UPI001F487344	128.0	3.54e-35	DNA-packaging protein	N/A
eggNOG-mapper	UHGV-0177722_4	397290.C810_05185	126.0	5.86e-35	DNA-packaging protein gp3	N/A
Pfam	UHGV-0177722_4	PF16677	N/A	N/A	DNA-packaging protein gp3	GP3_package
structural_annotation	UHGV-0177722_4	PF16677	N/A	N/A	N/A	N/A
KOfam	UHGV-0177722_5	K06909	150.3	1.54143e-44	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0177722_5	phrog_979	151.1	0	terminase large subunit	head and packaging
UniRef90	UHGV-0177722_5	UniRef90_UPI0006875436	634.0	0	phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0177722_5	1410650.JHWL01000003_gene2834	634.0	0	N/A	N/A
Pfam	UHGV-0177722_5	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
COG	UHGV-0177722_5	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0177722_5	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0177722_6	phrog_511	229.0	0	internal virion protein	head and packaging
eggNOG-mapper	UHGV-0177722_6	1410650.JHWL01000003_gene2827	317.0	0	N/A	N/A
structural_annotation	UHGV-0177722_6	PF11134,TIGR03300,NF038126,COG1520	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0177722_7	537007.BLAHAN_05255	60.8	0.000000424	N/A	N/A
PHROG	UHGV-0177722_8	phrog_37329	48.6	0.000000000000094	N/A	unknown function
Pfam	UHGV-0177722_8	PF00041	N/A	N/A	Fibronectin type III domain	fn3
COG	UHGV-0177722_8	COG4733	N/A	N/A	Phage-related protein, tail protein J	N/A
structural_annotation	UHGV-0177722_8	PF17744,PF16655,MF_01905,NF038116,COG3979,COG2033	N/A	N/A	N/A	N/A
PHROG	UHGV-0177722_10	phrog_156	301.6	0	portal protein	head and packaging
eggNOG-mapper	UHGV-0177722_10	1410650.JHWL01000003_gene2833	536.0	0	N/A	N/A
structural_annotation	UHGV-0177722_10	PF16510,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0177722_11	phrog_13908	152.1	2.8026e-45	N/A	unknown function
eggNOG-mapper	UHGV-0177722_11	1410650.JHWL01000003_gene2831	106.0	5.12e-24	N/A	N/A
PHROG	UHGV-0177722_12	phrog_1357	218.6	0	major head protein	head and packaging
UniRef90	UHGV-0177722_12	UniRef90_A0A2V2CFL5	407.0	0	N4-gp56 family major capsid protein	N/A
eggNOG-mapper	UHGV-0177722_12	1410650.JHWL01000003_gene2830	277.0	0	N/A	N/A
Pfam	UHGV-0177722_12	PF13252	N/A	N/A	N/A	DUF4043
NCBIFam	UHGV-0177722_12	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-0177722_12	PF13252,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0177722_14	phrog_12105	124.9	4.2e-37	N/A	unknown function
eggNOG-mapper	UHGV-0177722_14	1519439.JPJG01000060_gene1891	68.6	0.000000000000392	N/A	N/A
UniRef90	UHGV-0177722_15	UniRef90_R5DCX9	189.0	0	PG_binding_1 domain-containing protein	N/A
eggNOG-mapper	UHGV-0177722_15	1410650.JHWL01000003_gene2815	137.0	7.52e-34	N/A	N/A
PHROG	UHGV-0177722_16	phrog_22978	128.1	1.1e-39	N/A	unknown function
eggNOG-mapper	UHGV-0177722_16	1232449.BAHV02000016_gene1805	424.0	0	N/A	N/A
Pfam	UHGV-0177722_16	PF18819	N/A	N/A	Phage MuF-C-terminal domain	MuF_C
Pfam	UHGV-0177722_16	PF18760	N/A	N/A	ADP-Ribosyltransferase in polyvalent proteins	ART-PolyVal
PHROG	UHGV-0177722_17	phrog_33872	58.9	1e-16	N/A	unknown function
eggNOG-mapper	UHGV-0177722_17	693746.OBV_19740	54.7	0.0000000177	N/A	N/A
structural_annotation	UHGV-0177722_18	PF18962,NF011773	N/A	N/A	N/A	N/A
KOfam	UHGV-0177722_19	K19719	169.8	0	COL2A; collagen type II alpha	N/A
PHROG	UHGV-0177722_19	phrog_819	153.8	0	tail protein	tail
eggNOG-mapper	UHGV-0177722_19	1232443.BAIA02000078_gene14	84.0	0.0000000000000357	nuclear chromosome segregation	N/A
Pfam	UHGV-0177722_19	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
COG	UHGV-0177722_19	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
PHROG	UHGV-0177722_20	phrog_10993	76.8	2.5e-22	Hoc-like head decoration	head and packaging
eggNOG-mapper	UHGV-0177722_20	742738.HMPREF9460_02534	67.0	0.000000000714	N/A	N/A
Pfam	UHGV-0177722_20	PF19789	N/A	N/A	N/A	DUF6273
structural_annotation	UHGV-0177722_20	PF19789	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0177722_22	1519439.JPJG01000060_gene1895	132.0	1.73e-36	N/A	N/A
structural_annotation	UHGV-0177722_22	PF10618	N/A	N/A	N/A	N/A
PHROG	UHGV-0177722_26	phrog_6918	95.2	4.5e-28	holin	lysis
UniRef90	UHGV-0177722_26	UniRef90_A0A316QCY7	102.0	3.48e-26	Holin	N/A
eggNOG-mapper	UHGV-0177722_26	1297617.JPJD01000020_gene301	100.0	2.43e-26	Bacteriophage holin of superfamily 6 (Holin_LLH)	N/A
Pfam	UHGV-0177722_26	PF09682	N/A	N/A	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
structural_annotation	UHGV-0177722_26	PF09682,TIGR01673	N/A	N/A	N/A	N/A
PHROG	UHGV-0177722_27	phrog_14030	141.4	5.89947e-42	N/A	unknown function
UniRef90	UHGV-0177722_27	UniRef90_R6LL81	241.0	0	SLH domain-containing protein	N/A
eggNOG-mapper	UHGV-0177722_27	1121866.AUGK01000003_gene1444	96.7	3.09e-20	amidase activity	N/A
COG	UHGV-0177722_27	COG1705	N/A	N/A	Flagellum-specific peptidoglycan hydrolase FlgJ	N/A
eggNOG-mapper	UHGV-0177722_28	1160721.RBI_I00206	52.0	0.0000000396	N/A	N/A
structural_annotation	UHGV-0177722_28	PF10723	N/A	N/A	N/A	N/A
UniRef90	UHGV-0177722_32	UniRef90_A0A8F0WD75	80.5	7.5e-16	RNA polymerase sigma factor/Ubiquitin-like protein	N/A
eggNOG-mapper	UHGV-0177722_32	1378168.N510_03079	71.6	0.000000000000794	N/A	N/A
KOfam	UHGV-0177722_33	K14059	205.3	0	int; integrase	N/A
PHROG	UHGV-0177722_33	phrog_1	197.4	0	integrase	integration and excision
UniRef90	UHGV-0177722_33	UniRef90_A0A212JT52	254.0	0	Putative Integrase family protein	N/A
eggNOG-mapper	UHGV-0177722_33	1507.HMPREF0262_00307	203.0	0	Phage integrase family	N/A
Pfam	UHGV-0177722_33	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-0177722_33	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0177722_33	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0177722_33	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
KOfam	UHGV-0177722_34	K22299	48.4	0.00000000000019	rghR; HTH-type transcriptional regulator, competence development regulator	N/A
Pfam	UHGV-0177722_34	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0177722_34	COG1813	N/A	N/A	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	N/A
structural_annotation	UHGV-0177722_34	PF13560,MF_00535,TIGR03070,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0177722_38	K18830	56.9	5.8e-16	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-0177722_38	phrog_8	46.8	0.00000000000069	transcriptional regulator	transcription regulation
UniRef90	UHGV-0177722_38	UniRef90_UPI001C02DD29	90.5	5.43e-21	helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-0177722_38	1095749.HMPREF1052_2047	54.3	0.000000507	Peptidase S24-like	N/A
Pfam	UHGV-0177722_38	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0177722_38	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0177722_38	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0177722_41	PF10548	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0177722_43	NF041247	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0177722_44	PF05082	N/A	N/A	N/A	N/A
KOfam	UHGV-0177722_47	K00558	158.2	0	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-0177722_47	phrog_363	246.9	0	DNA methyltransferase	other
UniRef90	UHGV-0177722_47	UniRef90_G4KRB8	338.0	0	Cytosine-specific methyltransferase	N/A
eggNOG-mapper	UHGV-0177722_47	693746.OBV_01900	338.0	0	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	N/A
PADLOC	UHGV-0177722_47	MTase_II_00058	121.6	9.8e-36	Type II methyltransferase	RM
Pfam	UHGV-0177722_47	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
NCBIFam	UHGV-0177722_47	TIGR00675.1	N/A	N/A	DNA (cytosine-5-)-methyltransferase	N/A
COG	UHGV-0177722_47	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0177722_47	PF00145,MF_00351,TIGR00675,COG0270	N/A	N/A	N/A	N/A
PHROG	UHGV-0177722_48	phrog_9298	62.6	5.5e-18	radical SAM domain protein	other
UniRef90	UHGV-0177722_48	UniRef90_A0A841L4D7	314.0	0	Radical SAM superfamily enzyme YgiQ (UPF0313 family)	N/A
eggNOG-mapper	UHGV-0177722_48	742738.HMPREF9460_03770	293.0	0	radical SAM domain protein	N/A
COG	UHGV-0177722_48	COG1032	N/A	N/A	Radical SAM superfamily enzyme YgiQ, UPF0313 family	N/A
structural_annotation	UHGV-0177722_48	PF04055,MF_01864,TIGR04072,COG0621	N/A	N/A	N/A	N/A
PHROG	UHGV-0177722_50	phrog_1384	122.9	2.4e-36	Mom-like DNA modification protein	other
eggNOG-mapper	UHGV-0177722_50	665956.HMPREF1032_03086	275.0	0	COG NOG12663 non supervised orthologous group	N/A
structural_annotation	UHGV-0177722_50	PF11124,MF_02210,NF040502,COG3818	N/A	N/A	N/A	N/A
PHROG	UHGV-0177722_51	phrog_3136	130.3	7.4e-39	N/A	unknown function
UniRef90	UHGV-0177722_51	UniRef90_A0A843H9M8	101.0	2.11e-23	ASCH domain-containing protein	N/A
COG	UHGV-0177722_51	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
structural_annotation	UHGV-0177722_51	PF08819,MF_00684,NF008917,COG4933	N/A	N/A	N/A	N/A
PHROG	UHGV-0177722_52	phrog_38832	47.9	0.00000000000014	N/A	unknown function
PHROG	UHGV-0177722_55	phrog_190	103.3	2.5e-30	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0177722_55	UniRef90_UPI0006C2AC63	124.0	2e-33	N/A	N/A
eggNOG-mapper	UHGV-0177722_55	1226322.HMPREF1545_00295	117.0	3.8e-31	N/A	N/A
Pfam	UHGV-0177722_55	PF06356	N/A	N/A	N/A	DUF1064
structural_annotation	UHGV-0177722_55	PF06356	N/A	N/A	N/A	N/A
PHROG	UHGV-0177722_56	phrog_374	53.5	0.0000000000000047	HNH endonuclease	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0177722_56	1423807.BACO01000037_gene1103	68.6	0.000000000000817	N/A	N/A