UHGV-0181234 (vOTU-138115)

Viral Genome: UHGV-0181234

Genome Information

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Overview
UHGV ID	UHGV-0181234
vOTU ID	vOTU-138115
Representative Genome?	Yes
Source	CHVD
Original Genome ID	SAMEA2580300_a1_ct179665_vs1@Siphoviridae__sp._ctjnR1
Associated Biosample	SAMEA2580300
Viral Genome Confidence	Confident

Quality Assessment
CheckV Method	AAI-based
CheckV Completeness	68.66 (Medium-quality)
Trimmed?	No
CheckV Viral Markers	18
CheckV Host Markers	0
Recoded?	No

Viral Content
geNomad score	0.9708
Viral Hallmark Genes (geNomad)	6
Plasmid Hallmark Genes (geNomad)	0
ViralVerify Prediction	Virus
ViralVerify Score	35.3
Jumbo Phage?	No

Genome Content
Length (bps)	24,604
GC Content	62.07%
Genetic Code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS Genes	49
CDS Density	93%
Average CDS Length (bps)	468.61
Total tRNA Genes	0
Suppressor tRNA Genes	0

Genome Content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 68.66)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0181234_1	K22409	70.3	3.6e-20	sle1; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0181234_1	phrog_4602	61.5	2e-17	transglycosylase	other
UniRef90	UHGV-0181234_1	UniRef90_UPI0013ED940E	73.9	7.28e-16	LysM peptidoglycan-binding domain-containing protein	N/A
eggNOG-mapper	UHGV-0181234_1	742722.HMPREF9463_00268	107.0	6.07e-27	CW_7 repeat	N/A
Pfam	UHGV-0181234_1	PF01476	N/A	N/A	LysM domain	LysM
COG	UHGV-0181234_1	COG1388	N/A	N/A	LysM repeat	N/A
KOfam	UHGV-0181234_2	K06400	296.6	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0181234_2	phrog_95	297.9	0	integrase	integration and excision
UniRef90	UHGV-0181234_2	UniRef90_UPI0015C51E3A	736.0	0	recombinase family protein	N/A
eggNOG-mapper	UHGV-0181234_2	742722.HMPREF9463_00190	778.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-0181234_2	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0181234_2	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-0181234_2	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-0181234_2	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0181234_2	PF00239,PF07508,NF041201,COG1961	N/A	N/A	N/A	N/A
PHROG	UHGV-0181234_4	phrog_8	46.0	0.0000000000011	transcriptional regulator	transcription regulation
UniRef90	UHGV-0181234_4	UniRef90_UPI001E3ADF6A	153.0	0	helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-0181234_4	1443125.Z962_p0007	51.6	0.000000285	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0181234_4	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0181234_4	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
PHROG	UHGV-0181234_5	phrog_8	44.4	0.0000000000038	transcriptional regulator	transcription regulation
UniRef90	UHGV-0181234_5	UniRef90_UPI00189B0E5A	128.0	1.19e-37	helix-turn-helix transcriptional regulator	N/A
Pfam	UHGV-0181234_5	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0181234_5	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
eggNOG-mapper	UHGV-0181234_8	1111121.HMPREF1247_0049	52.8	0.00000018	N/A	N/A
KOfam	UHGV-0181234_9	K01160	51.8	0.000000000000024	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0181234_9	phrog_140	87.1	2.2e-25	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0181234_9	UniRef90_UPI00189AF018	324.0	0	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0181234_9	742722.HMPREF9463_00198	248.0	0	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-0181234_9	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0181234_9	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0181234_9	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-0181234_12	phrog_674	129.1	3.4e-38	N/A	unknown function
UniRef90	UHGV-0181234_12	UniRef90_UPI0018999756	506.0	0	N/A	N/A
eggNOG-mapper	UHGV-0181234_12	742722.HMPREF9463_00201	317.0	0	N/A	N/A
Pfam	UHGV-0181234_12	PF07083	N/A	N/A	N/A	DUF1351
structural_annotation	UHGV-0181234_12	PF07083	N/A	N/A	N/A	N/A
PHROG	UHGV-0181234_13	phrog_155	103.9	1.8e-30	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0181234_13	UniRef90_UPI00189706C6	386.0	0	ERF family protein	N/A
eggNOG-mapper	UHGV-0181234_13	742722.HMPREF9463_00202	287.0	0	Erf family	N/A
Pfam	UHGV-0181234_13	PF04404	N/A	N/A	ERF superfamily	ERF
structural_annotation	UHGV-0181234_13	PF04404,TIGR00607,COG4712	N/A	N/A	N/A	N/A
PHROG	UHGV-0181234_14	phrog_1389	67.5	1.9e-19	N/A	unknown function
eggNOG-mapper	UHGV-0181234_14	1347392.CCEZ01000060_gene3269	70.9	0.0000000000000258	N/A	N/A
structural_annotation	UHGV-0181234_14	PF11056,TIGR04376,COG1842	N/A	N/A	N/A	N/A
KOfam	UHGV-0181234_15	K03111	135.1	7.1e-40	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0181234_15	phrog_44	115.8	5.5e-37	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0181234_15	UniRef90_UPI001E58976C	268.0	0	single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0181234_15	742722.HMPREF9463_00204	189.0	0	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-0181234_15	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0181234_15	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0181234_15	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0181234_15	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
PHROG	UHGV-0181234_16	phrog_15768	113.4	2.6e-33	N/A	unknown function
eggNOG-mapper	UHGV-0181234_16	742722.HMPREF9463_00205	105.0	2.1e-25	N/A	N/A
structural_annotation	UHGV-0181234_16	PF19808	N/A	N/A	N/A	N/A
KOfam	UHGV-0181234_17	K02315	115.9	4e-34	dnaC; DNA replication protein DnaC	N/A
PHROG	UHGV-0181234_17	phrog_50	97.2	1.8e-28	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0181234_17	UniRef90_UPI001107227E	438.0	0	ATP-binding protein	N/A
eggNOG-mapper	UHGV-0181234_17	742722.HMPREF9463_00206	304.0	0	IstB-like ATP binding protein	N/A
Pfam	UHGV-0181234_17	PF01695	N/A	N/A	IstB-like ATP binding protein	IstB_IS21
COG	UHGV-0181234_17	COG1484	N/A	N/A	DNA replication protein DnaC	N/A
structural_annotation	UHGV-0181234_17	PF01695,MF_01919,NF005992,COG1484	N/A	N/A	N/A	N/A
PHROG	UHGV-0181234_23	phrog_355	61.7	1.1e-17	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0181234_23	UniRef90_UPI001E585BFA	245.0	0	N/A	N/A
eggNOG-mapper	UHGV-0181234_23	97138.C820_00250	127.0	1.42e-36	N/A	N/A
Pfam	UHGV-0181234_23	PF14359	N/A	N/A	N/A	DUF4406
structural_annotation	UHGV-0181234_23	PF14359,COG3613	N/A	N/A	N/A	N/A
PHROG	UHGV-0181234_25	phrog_3392	138.6	4.49999e-41	N/A	unknown function
eggNOG-mapper	UHGV-0181234_25	1217710.F969_00044	122.0	2.58e-31	N/A	N/A
structural_annotation	UHGV-0181234_31	PF01503,NF001613,COG0140	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0181234_34	1348663.KCH_49450	60.1	0.000000000346	N/A	N/A
PHROG	UHGV-0181234_35	phrog_2412	49.3	0.000000000000091	N/A	unknown function
PHROG	UHGV-0181234_36	phrog_38	153.2	1.4013e-45	terminase large subunit	head and packaging
UniRef90	UHGV-0181234_36	UniRef90_UPI00166CA12B	453.0	0	terminase family protein	N/A
eggNOG-mapper	UHGV-0181234_36	742722.HMPREF9463_00238	875.0	0	N/A	N/A
structural_annotation	UHGV-0181234_36	PF17289,PF05876,MF_04147,NF033889,COG5323	N/A	N/A	N/A	N/A
PHROG	UHGV-0181234_37	phrog_64	352.9	0	portal protein	head and packaging
UniRef90	UHGV-0181234_37	UniRef90_A0A096LKL8	941.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0181234_37	742722.HMPREF9463_00239	941.0	0	Phage portal protein, SPP1 family	N/A
Pfam	UHGV-0181234_37	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
NCBIFam	UHGV-0181234_37	TIGR01538.1	N/A	N/A	phage portal protein	N/A
structural_annotation	UHGV-0181234_37	PF05133,MF_04120,TIGR01538,COG5518	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0181234_38	PF06347,PF12949,NF040675,COG4991	N/A	N/A	N/A	N/A
PHROG	UHGV-0181234_39	phrog_115	209.4	0	minor head protein	head and packaging
UniRef90	UHGV-0181234_39	UniRef90_A0A096KKG4	974.0	0	Phage_Mu_F domain-containing protein	N/A
eggNOG-mapper	UHGV-0181234_39	742722.HMPREF9463_00241	974.0	0	domain, Protein	N/A
Pfam	UHGV-0181234_39	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
NCBIFam	UHGV-0181234_39	TIGR01641.1	N/A	N/A	minor capsid protein	N/A
COG	UHGV-0181234_39	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0181234_39	PF04233,TIGR01641	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0181234_41	PF00085,MF_01319,TIGR01068,COG0526	N/A	N/A	N/A	N/A
PHROG	UHGV-0181234_42	phrog_172	117.2	1.4e-34	head scaffolding protein	head and packaging
UniRef90	UHGV-0181234_42	UniRef90_UPI00189A45A9	264.0	0	N/A	N/A
eggNOG-mapper	UHGV-0181234_42	742722.HMPREF9463_00244	411.0	0	N/A	N/A
Pfam	UHGV-0181234_42	PF14265	N/A	N/A	N/A	DUF4355
structural_annotation	UHGV-0181234_42	PF14265	N/A	N/A	N/A	N/A
PHROG	UHGV-0181234_44	phrog_29	183.6	0	major head protein	head and packaging
UniRef90	UHGV-0181234_44	UniRef90_UPI00189BFF8B	616.0	0	major capsid protein	N/A
eggNOG-mapper	UHGV-0181234_44	742722.HMPREF9463_00246	715.0	0	Phage major capsid protein E	N/A
Pfam	UHGV-0181234_44	PF03864	N/A	N/A	Phage major capsid protein E	Phage_cap_E
structural_annotation	UHGV-0181234_44	PF03864,MF_04133,NF041162,COG4653	N/A	N/A	N/A	N/A
UniRef90	UHGV-0181234_45	UniRef90_X8HX34	87.8	3.71e-20	Phage gp6-like head-tail connector protein	N/A
eggNOG-mapper	UHGV-0181234_45	742722.HMPREF9463_00247	207.0	0	N/A	N/A
structural_annotation	UHGV-0181234_45	PF05135	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0181234_46	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0181234_47	phrog_5	44.1	0.0000000000051	tail completion or Neck1 protein	connector
UniRef90	UHGV-0181234_47	UniRef90_UPI00189A8F38	209.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0181234_47	742722.HMPREF9463_00249	239.0	0	N/A	N/A
structural_annotation	UHGV-0181234_47	PF17395,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-0181234_48	phrog_176	47.8	0.00000000000025	tail terminator	connector
UniRef90	UHGV-0181234_48	UniRef90_UPI00189AA88D	249.0	0	N/A	N/A
eggNOG-mapper	UHGV-0181234_48	1347392.CCEZ01000005_gene1240	104.0	5.81e-27	N/A	N/A
Pfam	UHGV-0181234_48	PF16807	N/A	N/A	N/A	DUF5072
structural_annotation	UHGV-0181234_48	PF16807,COG5003	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0181234_49	742722.HMPREF9463_00251	133.0	1.1e-38	Phage tail tube protein	N/A
Pfam	UHGV-0181234_49	PF06199	N/A	N/A	Phage tail tube protein	Phage_tail_2
COG	UHGV-0181234_49	COG5437	N/A	N/A	Phage tail protein, TP901-1 family	N/A