UHGV-0184490 (vOTU-010914)

Viral Genome: UHGV-0184490

Genome Information

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Overview
UHGV ID	UHGV-0184490
vOTU ID	vOTU-010914
Representative Genome?	Yes
Source	CHVD
Original Genome ID	SAMEA2737833_a1_ct6419_vs1@Myoviridae__sp._ctPdw1
Associated Biosample	SAMEA2737833
Viral Genome Confidence	Confident

Quality Assessment
CheckV Method	Provirus
CheckV Completeness	99.9 (High-quality)
Trimmed?	Yes
CheckV Viral Markers	17
CheckV Host Markers	4
Recoded?	No

Viral Content
geNomad score	0.9748
Viral Hallmark Genes (geNomad)	7
Plasmid Hallmark Genes (geNomad)	0
ViralVerify Prediction	Virus
ViralVerify Score	64.79
Jumbo Phage?	No

Genome Content
Length (bps)	31,932
GC Content	50.32%
Genetic Code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS Genes	53
CDS Density	95%
Average CDS Length (bps)	574.42
Total tRNA Genes	0
Suppressor tRNA Genes	0

Genome Content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-0184490_2	UniRef90_R6J3S0	585.0	0	Peptidase_C39_2 domain-containing protein	N/A
Pfam	UHGV-0184490_2	PF13529	N/A	N/A	Peptidase_C39 like family	Peptidase_C39_2
structural_annotation	UHGV-0184490_2	PF11814,NF033920,COG4990	N/A	N/A	N/A	N/A
PHROG	UHGV-0184490_3	phrog_263	90.0	1.4e-26	holin	lysis
UniRef90	UHGV-0184490_3	UniRef90_R6JQI4	150.0	0	Holin SPP1 family	N/A
eggNOG-mapper	UHGV-0184490_3	1297617.JPJD01000099_gene2175	73.6	4.05e-16	SPP1 phage holin	N/A
Pfam	UHGV-0184490_3	PF04688	N/A	N/A	SPP1 phage holin	Holin_SPP1
NCBIFam	UHGV-0184490_3	TIGR01592.1	N/A	N/A	phage holin	N/A
structural_annotation	UHGV-0184490_3	PF04688	N/A	N/A	N/A	N/A
PHROG	UHGV-0184490_4	phrog_1863	62.9	9.9e-19	N/A	unknown function
UniRef90	UHGV-0184490_4	UniRef90_UPI001E345E1F	63.2	0.0000000000236	hemolysin XhlA family protein	N/A
eggNOG-mapper	UHGV-0184490_4	1226322.HMPREF1545_04027	69.3	0.000000000000013	N/A	N/A
UniRef90	UHGV-0184490_5	UniRef90_R6J123	103.0	8.14e-28	ATP synthase B chain	N/A
KOfam	UHGV-0184490_6	K24213	65.3	6.2e-19	C1QTNF9; complement C1q and tumor necrosis factor-related protein 9	N/A
PHROG	UHGV-0184490_6	phrog_5073	78.7	4e-23	tail fiber protein	tail
eggNOG-mapper	UHGV-0184490_6	1519439.JPJG01000060_gene1892	60.1	0.00000156	Collagen triple helix repeat (20 copies)	N/A
Pfam	UHGV-0184490_6	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
COG	UHGV-0184490_6	COG3064	N/A	N/A	Membrane protein TolA involved in colicin uptake	N/A
structural_annotation	UHGV-0184490_6	PF10651	N/A	N/A	N/A	N/A
KOfam	UHGV-0184490_8	K07741	153.6	2.8026e-45	antB; anti-repressor protein	N/A
PHROG	UHGV-0184490_8	phrog_63	117.4	1.4e-34	anti-repressor Ant	transcription regulation
UniRef90	UHGV-0184490_8	UniRef90_A0A1C5P786	331.0	0	Phage anti-repressor protein	N/A
eggNOG-mapper	UHGV-0184490_8	1540257.JQMW01000004_gene443	300.0	0	Phage antirepressor protein KilAC domain	N/A
Pfam	UHGV-0184490_8	PF08346	N/A	N/A	AntA/AntB antirepressor	AntA
Pfam	UHGV-0184490_8	PF03374	N/A	N/A	Phage antirepressor protein KilAC domain	ANT
COG	UHGV-0184490_8	COG3561	N/A	N/A	Phage anti-repressor protein Ant	N/A
structural_annotation	UHGV-0184490_8	PF03374,PF08346,TIGR02681,COG3645,COG3561	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0184490_9	742738.HMPREF9460_00730	55.1	0.0000000015	N/A	N/A
structural_annotation	UHGV-0184490_9	PF13560,COG3423	N/A	N/A	N/A	N/A
PHROG	UHGV-0184490_10	phrog_8	42.4	0.000000000011	transcriptional regulator	transcription regulation
Pfam	UHGV-0184490_10	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
COG	UHGV-0184490_10	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
PHROG	UHGV-0184490_12	phrog_7121	47.3	0.000000000000096	tail fiber protein	tail
UniRef90	UHGV-0184490_12	UniRef90_R6J0A2	1025.0	0	Peptidase S74 domain-containing protein	N/A
eggNOG-mapper	UHGV-0184490_12	469596.HMPREF9488_01322	94.0	1.43e-17	cellulose 1,4-beta-cellobiosidase activity	N/A
Pfam	UHGV-0184490_12	PF13884	N/A	N/A	Chaperone of endosialidase	Peptidase_S74
COG	UHGV-0184490_12	COG5301	N/A	N/A	Phage-related tail fiber protein	N/A
PHROG	UHGV-0184490_13	phrog_1194	84.6	9e-25	N/A	unknown function
eggNOG-mapper	UHGV-0184490_13	877414.ATWA01000001_gene917	77.0	1.7e-16	N/A	N/A
PHROG	UHGV-0184490_14	phrog_1535	238.2	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0184490_14	97139.C824_02812	77.4	0.0000000000213	phage tail tape measure protein	N/A
COG	UHGV-0184490_14	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-0184490_16	PF11836	N/A	N/A	N/A	N/A
PHROG	UHGV-0184490_17	phrog_158	46.3	0.00000000000066	major tail protein	tail
UniRef90	UHGV-0184490_17	UniRef90_A0A358AW13	59.3	0.0000000221	Phage tail protein	N/A
eggNOG-mapper	UHGV-0184490_17	1280689.AUJC01000003_gene972	61.2	0.000000000656	Phage tail tube protein, TTP	N/A
Pfam	UHGV-0184490_17	PF08813	N/A	N/A	Phage tail tube protein, TTP	Phage_tail_3
structural_annotation	UHGV-0184490_17	PF16463,TIGR02241,COG5437	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0184490_18	PF05657	N/A	N/A	N/A	N/A
PHROG	UHGV-0184490_19	phrog_5	55.5	0.0000000000000014	tail completion or Neck1 protein	connector
UniRef90	UHGV-0184490_19	UniRef90_R6IVT6	77.4	0.00000000000000506	Bacteriophage protein PF04883 family	N/A
eggNOG-mapper	UHGV-0184490_19	1499683.CCFF01000014_gene3905	67.8	0.00000000000391	Bacteriophage HK97-gp10, putative tail-component	N/A
Pfam	UHGV-0184490_19	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
NCBIFam	UHGV-0184490_19	TIGR01725.1	N/A	N/A	HK97-gp10 family putative phage morphogenesis protein	N/A
structural_annotation	UHGV-0184490_19	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-0184490_23	phrog_283	258.8	0	major head protein	head and packaging
UniRef90	UHGV-0184490_23	UniRef90_A0A316RCU2	669.0	0	P22 coat protein	N/A
eggNOG-mapper	UHGV-0184490_23	1297617.JPJD01000059_gene2633	397.0	0	P22 coat protein - gene protein 5	N/A
Pfam	UHGV-0184490_23	PF11651	N/A	N/A	P22 coat protein - gene protein 5	P22_CoatProtein
structural_annotation	UHGV-0184490_23	PF11651,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0184490_24	phrog_172	129.5	2.4e-38	head scaffolding protein	head and packaging
UniRef90	UHGV-0184490_24	UniRef90_A0A316RQZ9	374.0	0	Phage capsid protein	N/A
eggNOG-mapper	UHGV-0184490_24	1499683.CCFF01000014_gene3909	89.7	3.98e-19	N/A	N/A
Pfam	UHGV-0184490_24	PF14265	N/A	N/A	N/A	DUF4355
structural_annotation	UHGV-0184490_24	PF14265	N/A	N/A	N/A	N/A
PHROG	UHGV-0184490_26	phrog_115	317.2	0	minor head protein	head and packaging
UniRef90	UHGV-0184490_26	UniRef90_R6J0C1	884.0	0	Phage_Mu_F domain-containing protein	N/A
eggNOG-mapper	UHGV-0184490_26	1294142.CINTURNW_1685	213.0	0	Phage Mu protein F like protein	N/A
Pfam	UHGV-0184490_26	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
NCBIFam	UHGV-0184490_26	TIGR01641.1	N/A	N/A	minor capsid protein	N/A
COG	UHGV-0184490_26	COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-0184490_27	phrog_64	383.8	0	portal protein	head and packaging
UniRef90	UHGV-0184490_27	UniRef90_R6ISE3	943.0	0	Phage portal protein SPP1 family	N/A
eggNOG-mapper	UHGV-0184490_27	877414.ATWA01000001_gene907	379.0	0	Phage portal protein, SPP1 family	N/A
Pfam	UHGV-0184490_27	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
NCBIFam	UHGV-0184490_27	TIGR01538.1	N/A	N/A	phage portal protein	N/A
structural_annotation	UHGV-0184490_27	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0184490_28	K06909	148.0	8.12753e-44	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0184490_28	phrog_10250	193.3	0	N/A	unknown function
UniRef90	UHGV-0184490_28	UniRef90_R6J366	862.0	0	Phage terminase large subunit PBSX family	N/A
eggNOG-mapper	UHGV-0184490_28	411490.ANACAC_00783	533.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0184490_28	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
NCBIFam	UHGV-0184490_28	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0184490_28	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0184490_28	PF03237,PF17289,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
KOfam	UHGV-0184490_29	K07474	91.9	1.4e-26	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-0184490_29	phrog_51	82.4	1.1e-24	terminase small subunit	head and packaging
UniRef90	UHGV-0184490_29	UniRef90_R6JPZ5	276.0	0	Phage Terminase Small Subunit	N/A
eggNOG-mapper	UHGV-0184490_29	1203606.HMPREF1526_00319	66.2	0.00000000000664	Terminase small subunit	N/A
Pfam	UHGV-0184490_29	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-0184490_29	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
PHROG	UHGV-0184490_31	phrog_36	66.1	6.3e-19	transcriptional regulator	transcription regulation
UniRef90	UHGV-0184490_31	UniRef90_A0A3D3FGT2	81.3	6.24e-17	Sigma70_r4 domain-containing protein	N/A
eggNOG-mapper	UHGV-0184490_31	903814.ELI_1292	65.5	0.0000000000108	N/A	N/A
KOfam	UHGV-0184490_32	K01520	135.5	4.00001e-40	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	N/A
PHROG	UHGV-0184490_32	phrog_135	111.0	8.6e-33	dUTPase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0184490_32	UniRef90_R6ILQ3	236.0	0	Deoxyuridine 5'-triphosphate nucleotidohydrolase	N/A
eggNOG-mapper	UHGV-0184490_32	1282887.AUJG01000016_gene1113	138.0	2.3e-39	N/A	N/A
Pfam	UHGV-0184490_32	PF00692	N/A	N/A	dUTPase	dUTPase
NCBIFam	UHGV-0184490_32	TIGR00576.1	N/A	N/A	dUTP diphosphatase	N/A
COG	UHGV-0184490_32	COG0756	N/A	N/A	dUTP pyrophosphatase (dUTPase)	N/A
structural_annotation	UHGV-0184490_32	PF00692,MF_00116,TIGR00576,COG0756	N/A	N/A	N/A	N/A
PHROG	UHGV-0184490_33	phrog_355	68.6	7.5e-20	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0184490_33	UniRef90_A0A396KGT7	182.0	0	N/A	N/A
eggNOG-mapper	UHGV-0184490_33	97138.C820_00250	128.0	5.59e-37	N/A	N/A
Pfam	UHGV-0184490_33	PF14359	N/A	N/A	N/A	DUF4406
structural_annotation	UHGV-0184490_33	PF14359,COG3613	N/A	N/A	N/A	N/A
PHROG	UHGV-0184490_34	phrog_10714	48.2	0.00000000000016	N/A	unknown function
UniRef90	UHGV-0184490_34	UniRef90_R5R2P7	68.2	0.000000000000682	DNA polymerase II large subunit	N/A
eggNOG-mapper	UHGV-0184490_34	428127.EUBDOL_01238	97.1	3.87e-25	N/A	N/A
UniRef90	UHGV-0184490_37	UniRef90_R5GX78	53.1	0.000000476	DNA polymerase II large subunit	N/A
KOfam	UHGV-0184490_38	K00390	45.0	1.1e-18	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	N/A
PHROG	UHGV-0184490_38	phrog_424	119.3	2.3e-35	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0184490_38	UniRef90_R6RCD0	488.0	0	Putative phosphoadenosine phosphosulfate reductase	N/A
eggNOG-mapper	UHGV-0184490_38	397291.C804_05723	256.0	0	Phosphoadenosine phosphosulfate reductase family	N/A
Pfam	UHGV-0184490_38	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-0184490_38	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-0184490_38	PF01507,MF_00063,NF010369,COG0175	N/A	N/A	N/A	N/A
PHROG	UHGV-0184490_40	phrog_6721	297.1	0	N/A	unknown function
eggNOG-mapper	UHGV-0184490_40	665956.HMPREF1032_00655	319.0	0	N/A	N/A
structural_annotation	UHGV-0184490_40	PF02511,MF_01408,TIGR02170,COG1351	N/A	N/A	N/A	N/A
KOfam	UHGV-0184490_43	K01160	57.9	2.8e-16	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0184490_43	phrog_140	130.6	7.8e-39	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0184490_43	UniRef90_A0A0L0WED4	128.0	1.77e-35	Holliday junction resolvase	N/A
eggNOG-mapper	UHGV-0184490_43	12348.Q8SDG7_BPLLH	121.0	1.84e-33	magnesium ion binding	N/A
Pfam	UHGV-0184490_43	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
structural_annotation	UHGV-0184490_43	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-0184490_45	phrog_2514	103.3	2.3e-30	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0184490_45	1461580.CCAS010000067_gene4022	120.0	2.18e-30	DnaD domain protein	N/A
COG	UHGV-0184490_45	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0184490_45	PF12793,NF033788,COG0640	N/A	N/A	N/A	N/A
KOfam	UHGV-0184490_46	K03111	148.1	8.26766e-44	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0184490_46	phrog_44	153.3	1.4013e-45	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0184490_46	UniRef90_R6JMM3	246.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0184490_46	718252.FP2_06770	158.0	0	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-0184490_46	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0184490_46	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0184490_46	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0184490_46	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0184490_46	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0184490_47	phrog_7566	121.1	3.1e-36	N/A	unknown function
UniRef90	UHGV-0184490_47	UniRef90_A0A8D9UHC0	71.6	0.0000000000000224	Recombination enhancement function protein nuclease	N/A
eggNOG-mapper	UHGV-0184490_47	1007096.BAGW01000031_gene114	85.5	2.29e-20	N/A	N/A
PHROG	UHGV-0184490_48	phrog_72	77.6	1.3e-22	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0184490_48	UniRef90_UPI001F3F3E5C	119.0	4.1e-31	recombination protein NinB	N/A
eggNOG-mapper	UHGV-0184490_48	1399942.U3PCT8_9CAUD	98.2	2.17e-23	N/A	N/A
structural_annotation	UHGV-0184490_48	PF05772	N/A	N/A	N/A	N/A
PHROG	UHGV-0184490_49	phrog_7838	226.2	0	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0184490_49	UniRef90_A0A8D9UGW3	198.0	0	DNA repair protein RAD52-like protein	N/A
eggNOG-mapper	UHGV-0184490_49	742767.HMPREF9456_02052	167.0	0	N/A	N/A
structural_annotation	UHGV-0184490_49	PF04098,TIGR00607,COG5055	N/A	N/A	N/A	N/A
PHROG	UHGV-0184490_50	phrog_253	128.8	3.3e-38	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0184490_50	UniRef90_R6J0Q7	287.0	0	N/A	N/A
eggNOG-mapper	UHGV-0184490_50	1227360.C176_12583	88.2	6.03e-20	Siphovirus Gp157	N/A
Pfam	UHGV-0184490_50	PF05565	N/A	N/A	Siphovirus Gp157	Sipho_Gp157
structural_annotation	UHGV-0184490_50	PF05565,NF002139	N/A	N/A	N/A	N/A