UHGV-0198868 (vOTU-047427)

Viral Genome: UHGV-0198868

Genome Information

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Overview
UHGV ID	UHGV-0198868
vOTU ID	vOTU-047427
Representative Genome?	Yes
Source	CHVD
Original Genome ID	SAMN00792089_a1_ct619@circular@Siphoviridae__sp._ctfJl619
Associated Biosample	SAMN00792089
Viral Genome Confidence	Confident

Quality Assessment
CheckV Method	DTR
CheckV Completeness	100 (Complete)
Trimmed?	No
CheckV Viral Markers	21
CheckV Host Markers	0
Recoded?	No

Viral Content
geNomad score	0.98
Viral Hallmark Genes (geNomad)	9
Plasmid Hallmark Genes (geNomad)	0
ViralVerify Prediction	Virus
ViralVerify Score	39.45
Jumbo Phage?	No

Genome Content
Length (bps)	41,514
GC Content	50.20%
Genetic Code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS Genes	71
CDS Density	93%
Average CDS Length (bps)	542.07
Total tRNA Genes	2
Suppressor tRNA Genes	0

Genome Content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
eggNOG-mapper	UHGV-0198868_2	1226322.HMPREF1545_00079	71.2	0.0000000000000202	N/A	N/A
PHROG	UHGV-0198868_3	phrog_28802	47.7	0.0000000000000034	N/A	unknown function
structural_annotation	UHGV-0198868_3	PF12510	N/A	N/A	N/A	N/A
PHROG	UHGV-0198868_4	phrog_20016	195.3	0	N/A	unknown function
UniRef90	UHGV-0198868_4	UniRef90_A0A285PT46	197.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-0198868_4	1226322.HMPREF1545_00077	175.0	0	N/A	N/A
structural_annotation	UHGV-0198868_4	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-0198868_5	phrog_16490	168.1	0	N/A	unknown function
eggNOG-mapper	UHGV-0198868_5	1408437.JNJN01000043_gene803	74.7	0.000000000000392	N/A	N/A
PHROG	UHGV-0198868_6	phrog_22984	79.2	1.5e-24	N/A	unknown function
PHROG	UHGV-0198868_7	phrog_21718	121.5	4.8e-36	N/A	unknown function
eggNOG-mapper	UHGV-0198868_7	397290.C810_05210	100.0	1.95e-24	N/A	N/A
PHROG	UHGV-0198868_8	phrog_3754	88.7	6e-26	N/A	unknown function
eggNOG-mapper	UHGV-0198868_8	476272.RUMHYD_01764	163.0	0	N/A	N/A
eggNOG-mapper	UHGV-0198868_10	742740.HMPREF9474_00056	102.0	1.43e-24	N/A	N/A
Pfam	UHGV-0198868_10	PF18912	N/A	N/A	Double zinc ribbon domain	DZR_2
structural_annotation	UHGV-0198868_10	COG4068	N/A	N/A	N/A	N/A
KOfam	UHGV-0198868_11	K23779	55.1	0.0000000000000019	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	N/A
PHROG	UHGV-0198868_11	phrog_5823	47.8	0.00000000000018	transcriptional regulator	transcription regulation
UniRef90	UHGV-0198868_11	UniRef90_A0A3E2XUS7	58.2	0.0000000061	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0198868_11	1304866.K413DRAFT_0803	52.8	0.00000036	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-0198868_11	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0198868_11	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
KOfam	UHGV-0198868_12	K07684	42.9	0.0000000000082	narL; two-component system, NarL family, nitrate/nitrite response regulator NarL	N/A
Pfam	UHGV-0198868_12	PF00196	N/A	N/A	Bacterial regulatory proteins, luxR family	GerE
COG	UHGV-0198868_12	COG2909	N/A	N/A	ATP-, maltotriose- and DNA-dependent transcriptional regulator MalT	N/A
structural_annotation	UHGV-0198868_12	PF04545,MF_00245,NF001067,COG2771	N/A	N/A	N/A	N/A
PHROG	UHGV-0198868_13	phrog_1129	84.3	7.8e-25	holin	lysis
UniRef90	UHGV-0198868_13	UniRef90_A0A3R5ZDU6	132.0	1.2e-38	Holin	N/A
eggNOG-mapper	UHGV-0198868_13	1256908.HMPREF0373_00463	128.0	1.36e-37	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-0198868_13	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0198868_13	PF06946	N/A	N/A	N/A	N/A
UniRef90	UHGV-0198868_14	UniRef90_UPI00102F4BEE	52.4	0.00000156	CTP synthase	N/A
eggNOG-mapper	UHGV-0198868_14	1042156.CXIVA_01580	67.0	0.00000000000108	N/A	N/A
KOfam	UHGV-0198868_15	K02395	80.0	4.8e-23	flgJ; peptidoglycan hydrolase FlgJ	N/A
PHROG	UHGV-0198868_15	phrog_7698	164.0	0	endolysin	lysis
UniRef90	UHGV-0198868_15	UniRef90_E5DTQ2	244.0	0	Putative muramidase	N/A
eggNOG-mapper	UHGV-0198868_15	471875.RUMLAC_02257	234.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-0198868_15	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
Pfam	UHGV-0198868_15	PF01832	N/A	N/A	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	Glucosaminidase
COG	UHGV-0198868_15	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0198868_15	PF01510,PF18342,MF_04111,NF008758,COG3023,COG4991	N/A	N/A	N/A	N/A
UniRef90	UHGV-0198868_18	UniRef90_UPI0018835F0C	273.0	0	collagen-like protein	N/A
eggNOG-mapper	UHGV-0198868_18	476272.RUMHYD_00002	116.0	7.38e-24	N/A	N/A
structural_annotation	UHGV-0198868_18	PF10651	N/A	N/A	N/A	N/A
PHROG	UHGV-0198868_20	phrog_18444	76.8	1.6e-22	N/A	unknown function
UniRef90	UHGV-0198868_20	UniRef90_A0A7X5CHF3	49.7	0.0000016	Peptide chain release factor 2	N/A
eggNOG-mapper	UHGV-0198868_20	1294142.CINTURNW_1707	57.4	0.000000000243	N/A	N/A
PHROG	UHGV-0198868_21	phrog_1067	404.9	0	minor head protein	head and packaging
UniRef90	UHGV-0198868_21	UniRef90_R6GLF8	387.0	0	Phage minor structural protein region	N/A
eggNOG-mapper	UHGV-0198868_21	1123263.AUKY01000068_gene489	407.0	0	Phage minor structural protein	N/A
Pfam	UHGV-0198868_21	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0198868_21	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0198868_21	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0198868_21	PF14594,PF00629,PF03424,TIGR01665,NF033675,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0198868_22	phrog_33	69.2	9.7e-20	distal tail protein Dit	tail
UniRef90	UHGV-0198868_22	UniRef90_A0A173Z1X4	132.0	1.47e-34	Phage-related protein	N/A
eggNOG-mapper	UHGV-0198868_22	1444306.JFZC01000034_gene2623	107.0	1.06e-25	tail component	N/A
COG	UHGV-0198868_22	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0198868_22	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0198868_23	phrog_6900	253.3	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0198868_23	536233.CLO_1577	286.0	0	tape measure	N/A
COG	UHGV-0198868_23	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-0198868_23	PF20155	N/A	N/A	N/A	N/A
PHROG	UHGV-0198868_25	phrog_18646	51.6	0.000000000000015	N/A	unknown function
PHROG	UHGV-0198868_26	phrog_885	63.1	2.7e-18	major tail protein	tail
UniRef90	UHGV-0198868_26	UniRef90_A0A843J9F0	181.0	0	Ig-like domain-containing protein	N/A
eggNOG-mapper	UHGV-0198868_26	1504822.CCNO01000012_gene492	204.0	0	N/A	N/A
structural_annotation	UHGV-0198868_26	PF06488,TIGR01603,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0198868_27	phrog_17405	41.0	0.000000000028	head protein	head and packaging
structural_annotation	UHGV-0198868_27	PF11367	N/A	N/A	N/A	N/A
PHROG	UHGV-0198868_28	phrog_17977	85.6	3.5e-25	N/A	unknown function
UniRef90	UHGV-0198868_28	UniRef90_UPI00141211AB	93.6	2.63e-22	head-tail adaptor protein	N/A
structural_annotation	UHGV-0198868_28	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0198868_30	phrog_544	119.3	3.2e-35	major head protein	head and packaging
UniRef90	UHGV-0198868_30	UniRef90_A0A1C6B5R0	336.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0198868_30	476272.RUMHYD_01776	314.0	0	N/A	N/A
structural_annotation	UHGV-0198868_30	PF03864,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
UniRef90	UHGV-0198868_31	UniRef90_A0A6B9SU02	94.7	1.48e-20	Fibronectin autolysin	N/A
structural_annotation	UHGV-0198868_31	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0198868_32	phrog_478	125.6	2e-37	site-specific recombination directionality factor RDF	integration and excision
UniRef90	UHGV-0198868_32	UniRef90_R6E548	169.0	0	Prophage pi1 protein 29	N/A
eggNOG-mapper	UHGV-0198868_32	1111121.HMPREF1247_0834	99.0	7.42e-25	N/A	N/A
PHROG	UHGV-0198868_33	phrog_5	72.9	6.4e-21	tail completion or Neck1 protein	connector
UniRef90	UHGV-0198868_33	UniRef90_A0A7X5E1T2	164.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0198868_33	1280685.AUKC01000004_gene1630	108.0	2.43e-28	N/A	N/A
Pfam	UHGV-0198868_33	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
NCBIFam	UHGV-0198868_33	TIGR01725.1	N/A	N/A	HK97-gp10 family putative phage morphogenesis protein	N/A
structural_annotation	UHGV-0198868_33	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-0198868_34	phrog_2468	114.1	2.8e-35	head morphogenesis	head and packaging
UniRef90	UHGV-0198868_34	UniRef90_A0A7X5E1T7	426.0	0	Phage_Mu_F domain-containing protein	N/A
eggNOG-mapper	UHGV-0198868_34	1504822.CCNO01000013_gene286	185.0	0	cell adhesion	N/A
Pfam	UHGV-0198868_34	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
COG	UHGV-0198868_34	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0198868_34	PF04233,TIGR01641,COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-0198868_36	phrog_64	168.4	0	portal protein	head and packaging
UniRef90	UHGV-0198868_36	UniRef90_UPI0018A8A301	603.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0198868_36	673376.F2VHW1_9CAUD	211.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0198868_36	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0198868_36	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
KOfam	UHGV-0198868_37	K06909	399.2	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0198868_37	phrog_3717	157.8	0	terminase large subunit	head and packaging
UniRef90	UHGV-0198868_37	UniRef90_UPI001C3B9235	622.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0198868_37	411471.SUBVAR_06507	579.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0198868_37	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-0198868_37	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-0198868_37	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0198868_37	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0198868_37	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
KOfam	UHGV-0198868_40	K07319	119.7	6.6e-36	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	N/A
PHROG	UHGV-0198868_40	phrog_498	455.3	0	DNA methyltransferase	other
UniRef90	UHGV-0198868_40	UniRef90_A0A101WI32	486.0	0	Methyltransferase	N/A
eggNOG-mapper	UHGV-0198868_40	226185.EF_2114	439.0	0	DNA methylase	N/A
PADLOC	UHGV-0198868_40	MTase_II_00015	376.6	0	Type II methyltransferase	RM
Pfam	UHGV-0198868_40	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
Pfam	UHGV-0198868_40	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-0198868_40	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-0198868_40	PF01555,PF02195,MF_02015,MF_01872,NF010253,TIGR04285,COG0863,COG1475	N/A	N/A	N/A	N/A
PHROG	UHGV-0198868_41	phrog_36	64.5	1.9e-18	transcriptional regulator	transcription regulation
eggNOG-mapper	UHGV-0198868_41	658655.HMPREF0988_02569	50.4	0.00000754	sigma factor activity	N/A
COG	UHGV-0198868_41	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-0198868_41	PF04545,PF18323,MF_00674,NF009172,COG1191	N/A	N/A	N/A	N/A
PHROG	UHGV-0198868_47	phrog_16244	41.1	0.000000000028	N/A	unknown function
PHROG	UHGV-0198868_48	phrog_2245	41.3	0.000000000021	nucleoside triphosphate pyrophosphohydrolase	other
PHROG	UHGV-0198868_49	phrog_9958	128.9	2.4e-38	N/A	unknown function
UniRef90	UHGV-0198868_49	UniRef90_UPI001D08A241	160.0	0	N/A	N/A
eggNOG-mapper	UHGV-0198868_49	1160721.RBI_I01591	132.0	3.22e-36	N/A	N/A
structural_annotation	UHGV-0198868_49	PF19789	N/A	N/A	N/A	N/A
PHROG	UHGV-0198868_53	phrog_824	138.5	2.29995e-41	N/A	unknown function
UniRef90	UHGV-0198868_53	UniRef90_UPI00189BCDD7	147.0	3.26503e-43	VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-0198868_53	665956.HMPREF1032_00132	134.0	1.2e-38	VRR_NUC	N/A
Pfam	UHGV-0198868_53	PF08774	N/A	N/A	VRR-NUC domain	VRR_NUC
PHROG	UHGV-0198868_55	phrog_16304	67.8	1.7e-19	N/A	unknown function
UniRef90	UHGV-0198868_55	UniRef90_UPI001E560709	72.0	0.0000000000113	N/A	N/A
eggNOG-mapper	UHGV-0198868_55	1226322.HMPREF1545_00016	58.9	0.0000000995	HNH endonuclease	N/A
Pfam	UHGV-0198868_55	PF19808	N/A	N/A	N/A	DUF6291
COG	UHGV-0198868_55	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-0198868_55	PF19808	N/A	N/A	N/A	N/A
PHROG	UHGV-0198868_56	phrog_392	111.3	1.1e-32	metal-dependent hydrolase	other
UniRef90	UHGV-0198868_56	UniRef90_A0A329URB3	264.0	0	Lactamase_B domain-containing protein	N/A
eggNOG-mapper	UHGV-0198868_56	665956.HMPREF1032_03101	202.0	0	May be involved in the transport of PQQ or its precursor to the periplasm	N/A
Pfam	UHGV-0198868_56	PF12706	N/A	N/A	Beta-lactamase superfamily domain	Lactamase_B_2
COG	UHGV-0198868_56	COG1235	N/A	N/A	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	N/A
structural_annotation	UHGV-0198868_56	PF12706,MF_01818,TIGR03307,COG1234	N/A	N/A	N/A	N/A
KOfam	UHGV-0198868_57	K07455	188.3	0	recT; recombination protein RecT	N/A
PHROG	UHGV-0198868_57	phrog_148	218.0	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0198868_57	UniRef90_UPI0012DD5B14	391.0	0	recombinase RecT	N/A
eggNOG-mapper	UHGV-0198868_57	1408437.JNJN01000039_gene372	326.0	0	RecT family	N/A
Pfam	UHGV-0198868_57	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-0198868_57	TIGR00616.1	N/A	N/A	recombinase, phage RecT family	N/A
COG	UHGV-0198868_57	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
structural_annotation	UHGV-0198868_57	PF03837,TIGR00616,COG3723	N/A	N/A	N/A	N/A
PHROG	UHGV-0198868_58	phrog_674	142.0	3.59994e-42	N/A	unknown function
UniRef90	UHGV-0198868_58	UniRef90_UPI000553F60F	170.0	0	N/A	N/A
eggNOG-mapper	UHGV-0198868_58	1408437.JNJN01000039_gene373	170.0	0	N/A	N/A
Pfam	UHGV-0198868_58	PF07083	N/A	N/A	N/A	DUF1351
structural_annotation	UHGV-0198868_58	PF07083	N/A	N/A	N/A	N/A
PHROG	UHGV-0198868_59	phrog_7964	146.6	0	N/A	unknown function
UniRef90	UHGV-0198868_59	UniRef90_C6L9Y5	125.0	5.94e-33	Bacterial transferase hexapeptide repeat protein	N/A
eggNOG-mapper	UHGV-0198868_59	478749.BRYFOR_05427	125.0	9.96e-34	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell	N/A
Pfam	UHGV-0198868_59	PF18836	N/A	N/A	YdcK Beta solenoid repeat	B_solenoid_ydck
COG	UHGV-0198868_59	COG1044	N/A	N/A	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	N/A
structural_annotation	UHGV-0198868_60	PF17259	N/A	N/A	N/A	N/A
UniRef90	UHGV-0198868_61	UniRef90_A0A367GIH6	117.0	2.9e-32	HTH cro/C1-type domain-containing protein	N/A
Pfam	UHGV-0198868_61	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
COG	UHGV-0198868_61	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0198868_61	PF05339,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-0198868_63	phrog_8	53.4	0.0000000000000061	transcriptional regulator	transcription regulation
UniRef90	UHGV-0198868_63	UniRef90_UPI001C009F10	84.0	5.32e-20	helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-0198868_63	665950.HMPREF1025_02561	59.7	0.0000000000278	sequence-specific DNA binding	N/A
Pfam	UHGV-0198868_63	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0198868_63	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0198868_63	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0198868_64	PF12844,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0198868_68	500635.MITSMUL_05163	75.1	0.0000000000022	N/A	N/A
Pfam	UHGV-0198868_70	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0198868_70	PF13560,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0198868_71	K14059	150.7	1.68156e-44	int; integrase	N/A
PHROG	UHGV-0198868_71	phrog_1	147.0	1.49939e-43	integrase	integration and excision
UniRef90	UHGV-0198868_71	UniRef90_A0A1Y4T0F9	330.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-0198868_71	748224.HMPREF9436_03382	244.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0198868_71	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0198868_71	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0198868_71	PF00589,PF14659,MF_01808,NF007246,COG4973	N/A	N/A	N/A	N/A