UHGV-0202105 (vOTU-017511)

Viral Genome: UHGV-0202105

Genome Information

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Overview
UHGV ID	UHGV-0202105
vOTU ID	vOTU-017511
Representative Genome?	Yes
Source	CHVD
Original Genome ID	SAMN09781741_a1_ct56002_vs1@Myoviridae__sp._ctY0S1
Associated Biosample	SAMN09781741
Viral Genome Confidence	Confident

Quality Assessment
CheckV Method	HMM-based
CheckV Completeness	51.87 (Medium-quality)
Trimmed?	No
CheckV Viral Markers	14
CheckV Host Markers	0
Recoded?	No

Viral Content
geNomad score	0.9764
Viral Hallmark Genes (geNomad)	8
Plasmid Hallmark Genes (geNomad)	0
ViralVerify Prediction	Virus
ViralVerify Score	48.68
Jumbo Phage?	No

Genome Content
Length (bps)	43,532
GC Content	51.36%
Genetic Code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS Genes	74
CDS Density	92%
Average CDS Length (bps)	539.27
Total tRNA Genes	0
Suppressor tRNA Genes	0

Genome Content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 51.87)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0202105_1	phrog_2538	43.6	0.0000000000041	terminase small subunit	head and packaging
KOfam	UHGV-0202105_2	K06909	253.7	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0202105_2	phrog_5653	111.0	7.7e-33	terminase large subunit	head and packaging
UniRef90	UHGV-0202105_2	UniRef90_UPI001C1240DD	233.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0202105_2	1567012.A0A0A7RTE7_9VIRU	230.0	0	Pfam:Terminase_3C	N/A
Pfam	UHGV-0202105_2	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-0202105_2	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
structural_annotation	UHGV-0202105_2	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0202105_3	phrog_64	175.4	0	portal protein	head and packaging
UniRef90	UHGV-0202105_3	UniRef90_G5FCB2	101.0	2.36e-19	Phage portal protein, SPP1 Gp6	N/A
eggNOG-mapper	UHGV-0202105_3	411902.CLOBOL_06311	103.0	1.13e-20	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0202105_3	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
eggNOG-mapper	UHGV-0202105_4	1121451.DESAM_10288	52.4	0.00000231	head morphogenesis protein, SPP1 gp7	N/A
Pfam	UHGV-0202105_4	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
COG	UHGV-0202105_4	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0202105_4	PF04233,TIGR01641,COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0202105_5	PF14265	N/A	N/A	N/A	N/A
PHROG	UHGV-0202105_6	phrog_1328	170.9	0	major head protein	head and packaging
UniRef90	UHGV-0202105_6	UniRef90_UPI001D096CC5	288.0	0	N/A	N/A
eggNOG-mapper	UHGV-0202105_6	398512.JQKC01000052_gene2672	223.0	0	N/A	N/A
Pfam	UHGV-0202105_6	PF17236	N/A	N/A	N/A	DUF5309
structural_annotation	UHGV-0202105_6	PF17236,MF_04119,NF041162,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0202105_9	phrog_5	42.9	0.00000000001	tail completion or Neck1 protein	connector
UniRef90	UHGV-0202105_9	UniRef90_UPI00122EE3AF	55.8	0.000000785	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0202105_9	445972.ANACOL_01849	52.0	0.00000613	N/A	N/A
structural_annotation	UHGV-0202105_9	PF20039,TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-0202105_14	phrog_1535	96.0	2.5e-28	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0202105_14	1121866.AUGK01000003_gene1437	77.0	0.0000000000225	phage tail tape measure protein	N/A
COG	UHGV-0202105_14	COG1280	N/A	N/A	Threonine/homoserine/homoserine lactone efflux protein	N/A
PHROG	UHGV-0202105_15	phrog_1194	71.2	1.2e-20	N/A	unknown function
eggNOG-mapper	UHGV-0202105_15	257314.LJ_0323	68.2	0.000000000000499	N/A	N/A
Pfam	UHGV-0202105_15	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-0202105_15	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0202105_16	phrog_6616	137.8	7.09996e-41	tail protein	tail
UniRef90	UHGV-0202105_16	UniRef90_A0A6P1TP45	94.4	1.44e-16	Peptidase S74 domain-containing protein	N/A
eggNOG-mapper	UHGV-0202105_16	1449050.JNLE01000003_gene3879	85.5	0.0000000000000141	N/A	N/A
structural_annotation	UHGV-0202105_16	PF14594,NF033848,COG4379	N/A	N/A	N/A	N/A
PHROG	UHGV-0202105_17	phrog_372	156.2	0	tail protein	tail
UniRef90	UHGV-0202105_17	UniRef90_UPI00195FD9F2	97.1	2.99e-17	N/A	N/A
eggNOG-mapper	UHGV-0202105_17	428127.EUBDOL_01566	124.0	2.82e-26	domain, Protein	N/A
Pfam	UHGV-0202105_17	PF05895	N/A	N/A	N/A	DUF859
COG	UHGV-0202105_17	COG3210	N/A	N/A	Large exoprotein involved in heme utilization or adhesion	N/A
structural_annotation	UHGV-0202105_17	PF05895,MF_04116,NF010681,COG1361	N/A	N/A	N/A	N/A
KOfam	UHGV-0202105_19	K21471	73.9	3.8e-21	cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]	N/A
PHROG	UHGV-0202105_19	phrog_329	48.1	0.0000000000000077	minor tail protein	tail
UniRef90	UHGV-0202105_19	UniRef90_A0A316PD96	87.8	1.53e-17	NlpC/P60 domain-containing protein	N/A
eggNOG-mapper	UHGV-0202105_19	1449353.JQMQ01000005_gene4103	63.9	0.00000000676	PFAM NLP P60 protein	N/A
Pfam	UHGV-0202105_19	PF00877	N/A	N/A	NlpC/P60 family	NLPC_P60
Pfam	UHGV-0202105_19	PF08239	N/A	N/A	Bacterial SH3 domain	SH3_3
COG	UHGV-0202105_19	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
structural_annotation	UHGV-0202105_19	PF00877,PF18342,NF033742,NF041850,COG0791,COG4991	N/A	N/A	N/A	N/A
PHROG	UHGV-0202105_20	phrog_37604	85.4	4.6e-25	N/A	unknown function
eggNOG-mapper	UHGV-0202105_20	457412.RSAG_01109	72.0	0.0000000000000458	N/A	N/A
PHROG	UHGV-0202105_21	phrog_881	85.0	4.1e-25	holin	lysis
UniRef90	UHGV-0202105_21	UniRef90_A0A8D9PDR9	79.3	5.37e-18	Holin	N/A
eggNOG-mapper	UHGV-0202105_21	476272.RUMHYD_01966	78.2	2.79e-18	Putative phage holin Dp-1	N/A
Pfam	UHGV-0202105_21	PF16938	N/A	N/A	Putative phage holin Dp-1	Phage_holin_Dp1
structural_annotation	UHGV-0202105_21	PF16938,COG3237	N/A	N/A	N/A	N/A
PHROG	UHGV-0202105_22	phrog_7339	91.8	6.4e-27	DNA repair exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0202105_22	UniRef90_A0A7C6W8G9	114.0	6.03e-27	Metallophos domain-containing protein	N/A
eggNOG-mapper	UHGV-0202105_22	1150474.JQJI01000006_gene784	79.3	0.0000000000000114	metallophosphoesterase	N/A
COG	UHGV-0202105_22	COG1408	N/A	N/A	Predicted phosphohydrolase, MPP superfamily	N/A
structural_annotation	UHGV-0202105_22	PF12850,MF_00325,NF003118,COG1311	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0202105_28	658655.HMPREF0988_00916	132.0	4.19e-38	N/A	N/A
PHROG	UHGV-0202105_32	phrog_6721	311.8	0	N/A	unknown function
eggNOG-mapper	UHGV-0202105_32	428125.CLOLEP_01387	301.0	0	N/A	N/A
structural_annotation	UHGV-0202105_32	PF02511,MF_01408,TIGR02170,COG1351	N/A	N/A	N/A	N/A
PHROG	UHGV-0202105_33	phrog_236	97.7	2.2e-28	nucleotide kinase	other
UniRef90	UHGV-0202105_33	UniRef90_X4ZUY3	84.0	1.17e-19	Gp62 protein	N/A
eggNOG-mapper	UHGV-0202105_33	1268072.PSAB_05960	84.0	1.96e-20	N/A	N/A
Pfam	UHGV-0202105_33	PF11753	N/A	N/A	N/A	DUF3310
structural_annotation	UHGV-0202105_34	PF08962	N/A	N/A	N/A	N/A
KOfam	UHGV-0202105_35	K01491	149.8	1.4013e-45	folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9]	N/A
PHROG	UHGV-0202105_35	phrog_7320	128.0	5.30001e-40	tetrahydrofolate dehydrogenase and cyclohydrolase	other
UniRef90	UHGV-0202105_35	UniRef90_A0A1Q6DZY7	132.0	5.35e-34	Bifunctional protein FolD	N/A
eggNOG-mapper	UHGV-0202105_35	1206729.BAFZ01000068_gene4191	127.0	8.18e-33	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate	N/A
Pfam	UHGV-0202105_35	PF02882	N/A	N/A	Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain	THF_DHG_CYH_C
COG	UHGV-0202105_35	COG0190	N/A	N/A	5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase	N/A
structural_annotation	UHGV-0202105_35	PF02882,MF_01576,NF010769,COG0190	N/A	N/A	N/A	N/A
PHROG	UHGV-0202105_37	phrog_24658	118.5	3e-35	N/A	unknown function
UniRef90	UHGV-0202105_37	UniRef90_R6HTM1	190.0	0	Gp50	N/A
PHROG	UHGV-0202105_39	phrog_924	47.7	0.00000000000027	N/A	unknown function
UniRef90	UHGV-0202105_39	UniRef90_A0A3D4EH17	53.5	0.000000883	N/A	N/A
Pfam	UHGV-0202105_39	PF04448	N/A	N/A	N/A	DUF551
COG	UHGV-0202105_39	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-0202105_44	PF14354,TIGR03655	N/A	N/A	N/A	N/A
PHROG	UHGV-0202105_45	phrog_2245	80.7	1.9e-23	nucleoside triphosphate pyrophosphohydrolase	other
UniRef90	UHGV-0202105_45	UniRef90_A0A4U9RLZ8	54.3	0.000000147	N/A	N/A
eggNOG-mapper	UHGV-0202105_45	1567010.A0A0A7RU90_9VIRU	58.5	0.00000000145	protein disulfide oxidoreductase activity	N/A
structural_annotation	UHGV-0202105_45	PF12643,MF_01020,TIGR03188	N/A	N/A	N/A	N/A
Pfam	UHGV-0202105_48	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
KOfam	UHGV-0202105_49	K02315	177.0	0	dnaC; DNA replication protein DnaC	N/A
PHROG	UHGV-0202105_49	phrog_50	148.5	4.62428e-44	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0202105_49	UniRef90_UPI0016236263	245.0	0	ATP-binding protein	N/A
eggNOG-mapper	UHGV-0202105_49	1280698.AUJS01000037_gene120	177.0	0	IstB-like ATP binding protein	N/A
Pfam	UHGV-0202105_49	PF01695	N/A	N/A	IstB-like ATP binding protein	IstB_IS21
NCBIFam	UHGV-0202105_49	NF005992.0	N/A	N/A	hypothetical protein	N/A
COG	UHGV-0202105_49	COG1484	N/A	N/A	DNA replication protein DnaC	N/A
structural_annotation	UHGV-0202105_49	PF01695,MF_01919,NF005992,COG1484	N/A	N/A	N/A	N/A
PHROG	UHGV-0202105_50	phrog_428	156.2	0	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0202105_50	UniRef90_A0A7I0ACT8	141.0	1.51e-37	Replication protein	N/A
eggNOG-mapper	UHGV-0202105_50	1298920.KI911353_gene2714	140.0	6.55e-38	DnaD domain protein	N/A
Pfam	UHGV-0202105_50	PF09524	N/A	N/A	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
NCBIFam	UHGV-0202105_50	TIGR02220.1	N/A	N/A	phage conserved hypothetical protein, C-terminal domain	N/A
COG	UHGV-0202105_50	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0202105_50	PF09524,PF08679,MF_01909,TIGR02220,NF040939,COG1675	N/A	N/A	N/A	N/A
PHROG	UHGV-0202105_51	phrog_3490	118.9	3.4e-35	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0202105_51	UniRef90_A0A6N2R581	155.0	2.8026e-45	ERCC4 domain-containing protein	N/A
eggNOG-mapper	UHGV-0202105_51	1304866.K413DRAFT_0825	146.0	1.91978e-42	resolution of meiotic recombination intermediates	N/A
Pfam	UHGV-0202105_51	PF02732	N/A	N/A	ERCC4 domain	ERCC4
COG	UHGV-0202105_51	COG1948	N/A	N/A	ERCC4-type crossover junction endonuclease	N/A
structural_annotation	UHGV-0202105_51	PF02732,NF040956,COG1948	N/A	N/A	N/A	N/A
PHROG	UHGV-0202105_52	phrog_378	57.8	2.8e-16	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
Pfam	UHGV-0202105_52	PF05037	N/A	N/A	N/A	DUF669
structural_annotation	UHGV-0202105_52	PF05037,NF004948	N/A	N/A	N/A	N/A
UniRef90	UHGV-0202105_53	UniRef90_A0A2Z4QA33	157.0	4.2039e-45	PD-(D/E)XK nuclease	N/A
eggNOG-mapper	UHGV-0202105_53	718252.FP2_01050	125.0	1.5e-33	N/A	N/A
structural_annotation	UHGV-0202105_53	PF10926,MF_03030,TIGR04328,COG4343	N/A	N/A	N/A	N/A
PHROG	UHGV-0202105_54	phrog_124	100.0	2.4e-29	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0202105_54	UniRef90_A0A2Z4QBI4	311.0	0	AAA domain protein	N/A
eggNOG-mapper	UHGV-0202105_54	718252.FP2_01060	216.0	0	AAA domain	N/A
Pfam	UHGV-0202105_54	PF13479	N/A	N/A	AAA domain	AAA_24
COG	UHGV-0202105_54	COG1100	N/A	N/A	GTPase SAR1 family domain	N/A
structural_annotation	UHGV-0202105_54	PF13479,MF_00350,TIGR01618,COG0468	N/A	N/A	N/A	N/A
Pfam	UHGV-0202105_56	PF12728	N/A	N/A	Helix-turn-helix domain	HTH_17
PHROG	UHGV-0202105_58	phrog_4433	129.6	5.00264e-43	N/A	unknown function
eggNOG-mapper	UHGV-0202105_58	665950.HMPREF1025_01373	115.0	4.32e-28	regulation of DNA-templated transcription, elongation	N/A
COG	UHGV-0202105_58	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
structural_annotation	UHGV-0202105_58	NF007410	N/A	N/A	N/A	N/A
UniRef90	UHGV-0202105_61	UniRef90_UPI000AE2A0E6	53.1	0.0000000473	Arc family DNA-binding protein	N/A
eggNOG-mapper	UHGV-0202105_61	1378168.N510_00491	70.5	0.00000000000000115	N/A	N/A
structural_annotation	UHGV-0202105_61	PF03869,NF008671,COG4877	N/A	N/A	N/A	N/A
UniRef90	UHGV-0202105_64	UniRef90_R5AMB2	86.3	4.23e-21	Arc domain-containing protein	N/A
eggNOG-mapper	UHGV-0202105_64	877414.ATWA01000045_gene1861	68.6	0.00000000000000776	Arc-like DNA binding domain	N/A
Pfam	UHGV-0202105_64	PF03869	N/A	N/A	Arc-like DNA binding domain	Arc
Pfam	UHGV-0202105_68	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-0202105_68	PF21291,NF041951,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-0202105_69	K22300	64.2	2.8e-18	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0202105_69	phrog_8	67.7	2.3e-19	transcriptional regulator	transcription regulation
UniRef90	UHGV-0202105_69	UniRef90_G7MD04	77.8	2.24e-16	Helix-turn-helix domain protein	N/A
eggNOG-mapper	UHGV-0202105_69	561177.ANHYDRO_01377	79.0	1.46e-16	Peptidase S24-like	N/A
Pfam	UHGV-0202105_69	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0202105_69	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-0202105_69	PF13560,MF_00535,NF007257,COG3655	N/A	N/A	N/A	N/A
Pfam	UHGV-0202105_70	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0202105_70	COG1426	N/A	N/A	N/A	N/A
KOfam	UHGV-0202105_72	K14059	208.0	0	int; integrase	N/A
PHROG	UHGV-0202105_72	phrog_1	198.6	0	integrase	integration and excision
UniRef90	UHGV-0202105_72	UniRef90_A0A1V5YD17	152.0	4.13e-39	Transposase	N/A
eggNOG-mapper	UHGV-0202105_72	1408437.JNJN01000039_gene380	130.0	1.77e-31	Phage integrase, N-terminal SAM-like domain	N/A
Pfam	UHGV-0202105_72	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0202105_72	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0202105_72	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
UniRef90	UHGV-0202105_74	UniRef90_A0A7I6N3F5	60.8	0.0000000421	YagA-like protein	N/A
eggNOG-mapper	UHGV-0202105_74	391735.Veis_5035	62.8	0.00000000492	N/A	N/A