UHGV-0202332 (vOTU-047558)

Viral Genome: UHGV-0202332

Genome Information

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Overview
UHGV ID	UHGV-0202332
vOTU ID	vOTU-047558
Representative Genome?	Yes
Source	CHVD
Original Genome ID	SAMN09781740_a1_ct28081@circular@Podoviridae__sp._ct8el081
Associated Biosample	N/A
Viral Genome Confidence	Confident

Quality Assessment
CheckV Method	DTR
CheckV Completeness	100 (Complete)
Trimmed?	No
CheckV Viral Markers	14
CheckV Host Markers	0
Recoded?	No

Viral Content
geNomad score	0.9798
Viral Hallmark Genes (geNomad)	5
Plasmid Hallmark Genes (geNomad)	0
ViralVerify Prediction	Virus
ViralVerify Score	24.61
Jumbo Phage?	No

Genome Content
Length (bps)	38,363
GC Content	52.81%
Genetic Code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS Genes	54
CDS Density	96%
Average CDS Length (bps)	680.67
Total tRNA Genes	1
Suppressor tRNA Genes	0

Genome Content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-0202332_2	UniRef90_A0A372V3V8	69.7	0.0000000000000233	XRE family transcriptional regulator	N/A
structural_annotation	UHGV-0202332_2	PF13560,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0202332_3	phrog_8	41.6	0.000000000024	transcriptional regulator	transcription regulation
UniRef90	UHGV-0202332_3	UniRef90_UPI0018AC325F	98.6	2.01e-24	helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-0202332_3	411483.FAEPRAA2165_00756	81.6	1.08e-17	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	N/A
COG	UHGV-0202332_3	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
KOfam	UHGV-0202332_6	K14059	211.5	0	int; integrase	N/A
PHROG	UHGV-0202332_6	phrog_1	185.7	0	integrase	integration and excision
UniRef90	UHGV-0202332_6	UniRef90_A0A8D9PE11	362.0	0	Integrase	N/A
eggNOG-mapper	UHGV-0202332_6	693746.OBV_01970	161.0	2.35418e-43	Phage integrase family	N/A
Pfam	UHGV-0202332_6	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0202332_6	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0202332_6	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-0202332_7	phrog_14770	108.9	9.7e-33	N/A	unknown function
UniRef90	UHGV-0202332_7	UniRef90_A0A8D9UHE1	1672.0	0	PolyVal ADP-ribosyltransferase	N/A
eggNOG-mapper	UHGV-0202332_7	445971.ANASTE_00728	276.0	0	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair	N/A
Pfam	UHGV-0202332_7	PF18819	N/A	N/A	Phage MuF-C-terminal domain	MuF_C
Pfam	UHGV-0202332_7	PF18760	N/A	N/A	ADP-Ribosyltransferase in polyvalent proteins	ART-PolyVal
Pfam	UHGV-0202332_7	PF18857	N/A	N/A	Large polyvalent protein associated domain 38	LPD38
COG	UHGV-0202332_7	COG0503	N/A	N/A	Adenine/guanine phosphoribosyltransferase or related PRPP-binding protein	N/A
structural_annotation	UHGV-0202332_8	MF_01304	N/A	N/A	N/A	N/A
KOfam	UHGV-0202332_9	K01448	63.1	3.7e-18	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0202332_9	phrog_435	73.9	2.9e-21	endolysin	lysis
UniRef90	UHGV-0202332_9	UniRef90_A0A2V2GRI9	387.0	0	MurNAc-LAA domain-containing protein	N/A
eggNOG-mapper	UHGV-0202332_9	1519439.JPJG01000014_gene134	54.7	0.00000383	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-0202332_9	PF01520	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_3
COG	UHGV-0202332_9	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0202332_9	PF01520,MF_00562,TIGR02883,COG0860	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0202332_10	1347392.CCEZ01000043_gene405	56.6	0.00000000507	N/A	N/A
PHROG	UHGV-0202332_11	phrog_1863	71.7	5.8e-21	N/A	unknown function
eggNOG-mapper	UHGV-0202332_11	718252.FP2_04900	87.8	9.27e-22	N/A	N/A
KOfam	UHGV-0202332_12	K06871	205.9	0	N/A	N/A
PHROG	UHGV-0202332_12	phrog_1802	166.9	0	radical SAM domain-containing protein	other
UniRef90	UHGV-0202332_12	UniRef90_A0A174B214	418.0	0	Anaerobic sulfatase-maturase	N/A
eggNOG-mapper	UHGV-0202332_12	457412.RSAG_01114	420.0	0	4Fe-4S single cluster domain	N/A
Pfam	UHGV-0202332_12	PF04055	N/A	N/A	Radical SAM superfamily	Radical_SAM
NCBIFam	UHGV-0202332_12	TIGR04115.1	N/A	N/A	radical SAM peptide maturase, CXXX-repeat target family	N/A
COG	UHGV-0202332_12	COG0641	N/A	N/A	Sulfatase maturation enzyme AslB, radical SAM superfamily	N/A
structural_annotation	UHGV-0202332_12	PF00962,MF_00660,TIGR04115,COG0641	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0202332_13	PF13801,TIGR04116,COG5420	N/A	N/A	N/A	N/A
KOfam	UHGV-0202332_16	K19719	255.0	0	COL2A; collagen type II alpha	N/A
PHROG	UHGV-0202332_16	phrog_819	162.3	0	tail protein	tail
UniRef90	UHGV-0202332_16	UniRef90_A0A8D9PE13	660.0	0	Virion structural protein	N/A
Pfam	UHGV-0202332_16	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
COG	UHGV-0202332_16	COG4675	N/A	N/A	Phage tail collar domain	N/A
PHROG	UHGV-0202332_17	phrog_3287	131.0	7.1e-39	virion structural protein	head and packaging
eggNOG-mapper	UHGV-0202332_17	665956.HMPREF1032_03917	475.0	0	N/A	N/A
structural_annotation	UHGV-0202332_17	PF11134,MF_01282,TIGR03300,COG5276	N/A	N/A	N/A	N/A
PHROG	UHGV-0202332_20	phrog_1357	246.5	0	major head protein	head and packaging
UniRef90	UHGV-0202332_20	UniRef90_A0A8D9UHB3	573.0	0	Major capsid protein	N/A
eggNOG-mapper	UHGV-0202332_20	696281.Desru_1092	290.0	0	N/A	N/A
Pfam	UHGV-0202332_20	PF13252	N/A	N/A	N/A	DUF4043
NCBIFam	UHGV-0202332_20	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-0202332_20	PF13252,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
UniRef90	UHGV-0202332_21	UniRef90_A0A8D9UHB9	411.0	0	Non-structural protein 5	N/A
UniRef90	UHGV-0202332_22	UniRef90_A0A8D9UHD6	128.0	5.95e-38	Ogr/Delta-like zinc finger	N/A
structural_annotation	UHGV-0202332_22	PF20020	N/A	N/A	N/A	N/A
PHROG	UHGV-0202332_23	phrog_156	176.1	0	portal protein	head and packaging
UniRef90	UHGV-0202332_23	UniRef90_A0A8D9UHD1	969.0	0	Portal protein	N/A
eggNOG-mapper	UHGV-0202332_23	1121091.AUMP01000003_gene2583	371.0	0	N/A	N/A
structural_annotation	UHGV-0202332_23	PF16510,MF_04120,TIGR01538,COG5518	N/A	N/A	N/A	N/A
KOfam	UHGV-0202332_25	K06909	155.9	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0202332_25	phrog_979	161.5	0	terminase large subunit	head and packaging
UniRef90	UHGV-0202332_25	UniRef90_A0A8D9UH35	780.0	0	Large subunit terminase	N/A
eggNOG-mapper	UHGV-0202332_25	1232449.BAHV02000016_gene1824	469.0	0	N/A	N/A
Pfam	UHGV-0202332_25	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
COG	UHGV-0202332_25	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0202332_25	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
UniRef90	UHGV-0202332_26	UniRef90_A0A8D9UHF6	157.0	0	N/A	N/A
eggNOG-mapper	UHGV-0202332_26	1054213.HMPREF9946_03131	59.7	0.000000000338	N/A	N/A
Pfam	UHGV-0202332_26	PF18932	N/A	N/A	N/A	DUF5681
PHROG	UHGV-0202332_27	phrog_7339	87.2	1.7e-25	DNA repair exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0202332_27	UniRef90_A0A2V2GLL9	486.0	0	Metallophos_2 domain-containing protein	N/A
eggNOG-mapper	UHGV-0202332_27	1150474.JQJI01000006_gene784	93.6	4.26e-20	metallophosphoesterase	N/A
Pfam	UHGV-0202332_27	PF00149	N/A	N/A	Calcineurin-like phosphoesterase	Metallophos
COG	UHGV-0202332_27	COG1408	N/A	N/A	Predicted phosphohydrolase, MPP superfamily	N/A
PHROG	UHGV-0202332_29	phrog_36	43.2	0.0000000000072	transcriptional regulator	transcription regulation
UniRef90	UHGV-0202332_29	UniRef90_UPI001D0837DD	114.0	1.01e-29	N/A	N/A
eggNOG-mapper	UHGV-0202332_29	428125.CLOLEP_01806	86.7	1.51e-19	N/A	N/A
structural_annotation	UHGV-0202332_29	PF07374,TIGR01636	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0202332_30	657322.FPR_23450	152.0	0	N/A	N/A
UniRef90	UHGV-0202332_32	UniRef90_A0A8D9PDK2	65.9	0.00000000000565	Zinc-ribbon containing domain	N/A
UniRef90	UHGV-0202332_33	UniRef90_A0A8D9PDQ6	144.0	5.32493e-44	Restriction alleviation protein	N/A
Pfam	UHGV-0202332_33	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
dbAPIS	UHGV-0202332_33	APIS033	N/A	N/A	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	N/A
structural_annotation	UHGV-0202332_33	TIGR03655	N/A	N/A	N/A	N/A
PHROG	UHGV-0202332_34	phrog_38832	82.4	3.2e-24	N/A	unknown function
eggNOG-mapper	UHGV-0202332_34	665956.HMPREF1032_03087	83.2	3.09e-18	N/A	N/A
PHROG	UHGV-0202332_36	phrog_3136	135.7	1.50001e-40	N/A	unknown function
UniRef90	UHGV-0202332_36	UniRef90_UPI001A9A8D4F	129.0	1.73e-34	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-0202332_36	642492.Clole_1416	56.2	0.0000000796	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	N/A
COG	UHGV-0202332_36	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
structural_annotation	UHGV-0202332_36	PF08819,MF_00684,NF008917,COG4933	N/A	N/A	N/A	N/A
PHROG	UHGV-0202332_39	phrog_1271	40.3	0.000000000058	HNH endonuclease	DNA, RNA and nucleotide metabolism
structural_annotation	UHGV-0202332_39	TIGR04381	N/A	N/A	N/A	N/A
KOfam	UHGV-0202332_41	K01160	64.9	2.1e-18	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0202332_41	phrog_34	71.1	1.8e-20	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0202332_41	UniRef90_A0A498CNH4	146.0	1.91978e-43	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0202332_41	477974.Daud_0813	50.8	0.00000491	N/A	N/A
Pfam	UHGV-0202332_41	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
structural_annotation	UHGV-0202332_41	PF19595,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-0202332_42	phrog_111	159.0	0	DNA methyltransferase	other
UniRef90	UHGV-0202332_42	UniRef90_A0A0J0YT24	209.0	0	Adenine methyltransferase	N/A
eggNOG-mapper	UHGV-0202332_42	1450694.BTS2_0497	202.0	0	DNA N-6-adenine-methyltransferase (Dam)	N/A
PADLOC	UHGV-0202332_42	oMTase_00015	185.1	0	orphan methyltransferase	RM
Pfam	UHGV-0202332_42	PF05869	N/A	N/A	DNA N-6-adenine-methyltransferase (Dam)	Dam
structural_annotation	UHGV-0202332_42	PF05869,MF_03187,TIGR01712,COG2263	N/A	N/A	N/A	N/A
PHROG	UHGV-0202332_43	phrog_9804	164.9	0	N/A	unknown function
UniRef90	UHGV-0202332_43	UniRef90_UPI001E312ACC	360.0	0	replicative helicase loader/inhibitor	N/A
eggNOG-mapper	UHGV-0202332_43	1121344.JHZO01000003_gene981	176.0	0	Loader and inhibitor of phage G40P	N/A
Pfam	UHGV-0202332_43	PF11417	N/A	N/A	Loader and inhibitor of phage G40P	Inhibitor_G39P
structural_annotation	UHGV-0202332_43	PF11417	N/A	N/A	N/A	N/A
PHROG	UHGV-0202332_44	phrog_16304	90.4	2.2e-26	N/A	unknown function
UniRef90	UHGV-0202332_44	UniRef90_UPI001E560709	423.0	0	N/A	N/A
eggNOG-mapper	UHGV-0202332_44	290402.Cbei_3733	63.5	0.00000000275	DnaD domain protein	N/A
Pfam	UHGV-0202332_44	PF19808	N/A	N/A	N/A	DUF6291
COG	UHGV-0202332_44	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0202332_44	PF19808	N/A	N/A	N/A	N/A
KOfam	UHGV-0202332_45	K03111	134.5	1.2e-39	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0202332_45	phrog_44	135.9	2.69999e-40	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0202332_45	UniRef90_UPI001E2A5A6F	234.0	0	single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0202332_45	1235835.C814_01372	130.0	7.27e-37	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-0202332_45	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0202332_45	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0202332_45	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0202332_45	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0202332_45	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0202332_46	phrog_7566	52.8	0.0000000000000057	N/A	unknown function
eggNOG-mapper	UHGV-0202332_46	693746.OBV_24070	70.9	0.0000000000000241	N/A	N/A
PHROG	UHGV-0202332_47	phrog_72	64.9	1.2e-18	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0202332_47	UniRef90_UPI001F3F3E5C	145.0	3.41006e-41	recombination protein NinB	N/A
eggNOG-mapper	UHGV-0202332_47	445972.ANACOL_01825	129.0	1.98e-35	N/A	N/A
structural_annotation	UHGV-0202332_47	PF05772	N/A	N/A	N/A	N/A
PHROG	UHGV-0202332_48	phrog_659	196.3	0	Sak-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0202332_48	UniRef90_UPI001E5A6693	414.0	0	N/A	N/A
eggNOG-mapper	UHGV-0202332_48	1507.HMPREF0262_00431	235.0	0	N/A	N/A
Pfam	UHGV-0202332_48	PF06378	N/A	N/A	N/A	DUF1071
structural_annotation	UHGV-0202332_48	PF06378,COG4712	N/A	N/A	N/A	N/A
PHROG	UHGV-0202332_50	phrog_4433	221.7	0	N/A	unknown function
eggNOG-mapper	UHGV-0202332_50	33035.JPJF01000122_gene2458	115.0	1.07e-27	regulation of DNA-templated transcription, elongation	N/A
COG	UHGV-0202332_50	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
structural_annotation	UHGV-0202332_53	NF041588	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0202332_54	PF12728,NF040990	N/A	N/A	N/A	N/A