UHGV-0202871 (vOTU-065007)

Viral Genome: UHGV-0202871

Genome Information

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Overview
UHGV ID	UHGV-0202871
vOTU ID	vOTU-065007
Representative Genome?	Yes
Source	CHVD
Original Genome ID	SAMN09781775_a1_ct192699_vs1@Podoviridae__sp._ctoGC1
Associated Biosample	N/A
Viral Genome Confidence	Confident

Quality Assessment
CheckV Method	AAI-based
CheckV Completeness	97.48 (High-quality)
Trimmed?	No
CheckV Viral Markers	14
CheckV Host Markers	1
Recoded?	No

Viral Content
geNomad score	0.9823
Viral Hallmark Genes (geNomad)	3
Plasmid Hallmark Genes (geNomad)	0
ViralVerify Prediction	Virus
ViralVerify Score	18.69
Jumbo Phage?	No

Genome Content
Length (bps)	41,588
GC Content	56.01%
Genetic Code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS Genes	63
CDS Density	95%
Average CDS Length (bps)	624.19
Total tRNA Genes	0
Suppressor tRNA Genes	0

Genome Content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 97.48)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0202871_1	K00390	45.0	0.0000000000015	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	N/A
PHROG	UHGV-0202871_1	phrog_424	58.3	1.5e-16	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0202871_1	UniRef90_A0A0U3EGR7	112.0	1.08e-26	Phosphoadenosine phosphosulfate reductase family protein	N/A
eggNOG-mapper	UHGV-0202871_1	537013.CLOSTMETH_01340	112.0	2.63e-27	Phosphoadenosine phosphosulfate reductase family	N/A
Pfam	UHGV-0202871_1	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-0202871_1	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-0202871_1	PF01507,MF_00063,NF002537,COG0175	N/A	N/A	N/A	N/A
KOfam	UHGV-0202871_2	K00571	116.4	3.5e-34	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-0202871_2	phrog_67	96.8	7.9e-29	DNA methyltransferase	other
UniRef90	UHGV-0202871_2	UniRef90_A0A2U1CFM2	417.0	0	Methyltransferase	N/A
eggNOG-mapper	UHGV-0202871_2	658655.HMPREF0988_00878	367.0	0	DNA methylase	N/A
PADLOC	UHGV-0202871_2	MTase_II_00157	83.8	2.8e-24	Type II methyltransferase	RM
Pfam	UHGV-0202871_2	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-0202871_2	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-0202871_2	PF01555,MF_01872,NF010253,COG0863	N/A	N/A	N/A	N/A
PHROG	UHGV-0202871_3	phrog_190	113.0	2.2e-33	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0202871_3	UniRef90_A0A8D9PDD6	256.0	0	Endonuclease	N/A
eggNOG-mapper	UHGV-0202871_3	553220.CAMGR0001_2115	84.3	4.28e-19	N/A	N/A
Pfam	UHGV-0202871_3	PF06356	N/A	N/A	N/A	DUF1064
structural_annotation	UHGV-0202871_3	PF06356	N/A	N/A	N/A	N/A
KOfam	UHGV-0202871_5	K02315	118.6	7e-35	dnaC; DNA replication protein DnaC	N/A
PHROG	UHGV-0202871_5	phrog_50	125.9	3.7e-37	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0202871_5	UniRef90_A0A810Q3X8	295.0	0	IstB_IS21 domain-containing protein	N/A
eggNOG-mapper	UHGV-0202871_5	1507.HMPREF0262_00302	178.0	0	Bacterial dnaA protein	N/A
Pfam	UHGV-0202871_5	PF01695	N/A	N/A	IstB-like ATP binding protein	IstB_IS21
COG	UHGV-0202871_5	COG1484	N/A	N/A	DNA replication protein DnaC	N/A
structural_annotation	UHGV-0202871_5	PF01695,MF_01158,NF005378,COG1484	N/A	N/A	N/A	N/A
PHROG	UHGV-0202871_6	phrog_15768	76.6	5.9e-23	N/A	unknown function
UniRef90	UHGV-0202871_6	UniRef90_UPI001959E913	107.0	2.95e-25	N/A	N/A
eggNOG-mapper	UHGV-0202871_6	445970.ALIPUT_02689	81.6	5.78e-16	DNA-binding transcription factor activity	N/A
Pfam	UHGV-0202871_6	PF19808	N/A	N/A	N/A	DUF6291
COG	UHGV-0202871_6	COG2188	N/A	N/A	DNA-binding transcriptional regulator, GntR family	N/A
structural_annotation	UHGV-0202871_6	PF19808	N/A	N/A	N/A	N/A
KOfam	UHGV-0202871_8	K03111	120.3	2.4e-35	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0202871_8	phrog_44	119.6	2.7e-35	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0202871_8	UniRef90_A0A8D9PDS7	244.0	0	Single strand binding protein	N/A
eggNOG-mapper	UHGV-0202871_8	1203606.HMPREF1526_01880	118.0	1.91e-32	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-0202871_8	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0202871_8	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0202871_8	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0202871_8	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0202871_8	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0202871_9	phrog_7566	96.9	1.1e-28	N/A	unknown function
UniRef90	UHGV-0202871_9	UniRef90_A0A8D9UHC0	191.0	0	Recombination enhancement function protein nuclease	N/A
eggNOG-mapper	UHGV-0202871_9	693746.OBV_24070	123.0	2.71e-35	N/A	N/A
PHROG	UHGV-0202871_11	phrog_72	51.9	0.0000000000000041	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0202871_11	UniRef90_A0A8D9PDS2	342.0	0	NinB protein	N/A
eggNOG-mapper	UHGV-0202871_11	445972.ANACOL_01825	135.0	4.41e-38	N/A	N/A
structural_annotation	UHGV-0202871_11	PF05772	N/A	N/A	N/A	N/A
PHROG	UHGV-0202871_12	phrog_155	148.1	5.46506e-44	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0202871_12	UniRef90_UPI001439856C	198.0	0	ERF family protein	N/A
eggNOG-mapper	UHGV-0202871_12	97138.C820_00777	174.0	0	ERF superfamily	N/A
Pfam	UHGV-0202871_12	PF04404	N/A	N/A	ERF superfamily	ERF
structural_annotation	UHGV-0202871_12	PF04404,COG4712	N/A	N/A	N/A	N/A
PHROG	UHGV-0202871_13	phrog_253	91.3	1.1e-26	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0202871_13	UniRef90_A0A8D9PDS3	313.0	0	Resistance protein	N/A
eggNOG-mapper	UHGV-0202871_13	748224.HMPREF9436_03356	108.0	1.16e-27	Siphovirus Gp157	N/A
Pfam	UHGV-0202871_13	PF05565	N/A	N/A	Siphovirus Gp157	Sipho_Gp157
structural_annotation	UHGV-0202871_13	PF05565	N/A	N/A	N/A	N/A
UniRef90	UHGV-0202871_15	UniRef90_A0A8D9UH91	301.0	0	HTH cro/C1-type domain-containing protein	N/A
Pfam	UHGV-0202871_15	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0202871_15	PF01381,PF21715,NF041951,TIGR04176,COG1476,COG1654	N/A	N/A	N/A	N/A
KOfam	UHGV-0202871_16	K06236	47.6	0.000000000000099	COL1A; collagen type I alpha	N/A
PHROG	UHGV-0202871_16	phrog_4433	240.3	0	N/A	unknown function
eggNOG-mapper	UHGV-0202871_16	767434.Fraau_1460	107.0	8.32e-25	regulation of DNA-templated transcription, elongation	N/A
Pfam	UHGV-0202871_16	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
COG	UHGV-0202871_16	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
structural_annotation	UHGV-0202871_16	NF007410	N/A	N/A	N/A	N/A
PHROG	UHGV-0202871_20	phrog_18886	42.6	0.000000000007	N/A	unknown function
UniRef90	UHGV-0202871_20	UniRef90_UPI00189CC6CE	58.2	0.000000852	Rha family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0202871_20	1120933.ATUY01000004_gene1041	60.8	0.0000000157	Phage regulatory protein	N/A
Pfam	UHGV-0202871_20	PF09669	N/A	N/A	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
COG	UHGV-0202871_20	COG3646	N/A	N/A	Phage regulatory protein Rha	N/A
UniRef90	UHGV-0202871_21	UniRef90_A0A8D9PDN2	124.0	4.3e-36	DNA-binding protein	N/A
structural_annotation	UHGV-0202871_21	PF13560,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0202871_24	phrog_8	41.8	0.00000000002	transcriptional regulator	transcription regulation
UniRef90	UHGV-0202871_24	UniRef90_A0A8D9UHB1	76.3	9.4e-16	Repressor protein CI	N/A
eggNOG-mapper	UHGV-0202871_24	1378168.N510_01712	64.3	0.0000000000873	N/A	N/A
Pfam	UHGV-0202871_24	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0202871_24	PF12844,NF041951,COG1396	N/A	N/A	N/A	N/A
UniRef90	UHGV-0202871_27	UniRef90_A0A8D9PDV2	149.0	1.4013e-45	DNA methyl phosphotriester repair domain protein	N/A
eggNOG-mapper	UHGV-0202871_27	1226325.HMPREF1548_05412	66.6	0.00000000000314	Peptidoglycan-binding domain 1 protein	N/A
COG	UHGV-0202871_27	COG2333	N/A	N/A	DNA uptake channel protein ComEC C-terminal domain, metallo-beta-lactamase superfamily	N/A
structural_annotation	UHGV-0202871_28	PF12844,MF_00535,NF041677,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0202871_29	K14059	168.1	0	int; integrase	N/A
PHROG	UHGV-0202871_29	phrog_1	163.2	0	integrase	integration and excision
UniRef90	UHGV-0202871_29	UniRef90_A0A174HFN7	352.0	0	Site-specific tyrosine recombinase XerC	N/A
eggNOG-mapper	UHGV-0202871_29	742738.HMPREF9460_01344	220.0	0	Phage integrase family	N/A
Pfam	UHGV-0202871_29	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0202871_29	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0202871_29	PF00589,PF12167,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0202871_30	PF12510	N/A	N/A	N/A	N/A
PHROG	UHGV-0202871_31	phrog_20016	184.0	0	N/A	unknown function
UniRef90	UHGV-0202871_31	UniRef90_A0A285PT46	187.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-0202871_31	1226322.HMPREF1545_00077	167.0	0	N/A	N/A
structural_annotation	UHGV-0202871_31	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-0202871_32	phrog_16490	125.3	6.6e-37	N/A	unknown function
eggNOG-mapper	UHGV-0202871_32	1408437.JNJN01000043_gene803	167.0	0	N/A	N/A
PHROG	UHGV-0202871_33	phrog_22984	76.2	3.5e-22	N/A	unknown function
PHROG	UHGV-0202871_34	phrog_21718	101.8	6.2e-30	N/A	unknown function
eggNOG-mapper	UHGV-0202871_34	397290.C810_05210	72.4	0.0000000000000597	N/A	N/A
PHROG	UHGV-0202871_35	phrog_3754	94.2	1.2e-27	N/A	unknown function
eggNOG-mapper	UHGV-0202871_35	476272.RUMHYD_01764	162.0	0	N/A	N/A
UniRef90	UHGV-0202871_36	UniRef90_A0A316M336	1066.0	0	MuF_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0202871_36	693746.OBV_01590	484.0	0	N/A	N/A
eggNOG-mapper	UHGV-0202871_37	1410650.JHWL01000003_gene2815	56.2	0.00000562	N/A	N/A
UniRef90	UHGV-0202871_38	UniRef90_A0A8D9UGT1	134.0	4.23e-38	Sigma C capsid protein	N/A
PHROG	UHGV-0202871_39	phrog_511	221.4	0	internal virion protein	head and packaging
UniRef90	UHGV-0202871_39	UniRef90_A0A8D9UH72	867.0	0	Stabilization protein (Fragment)	N/A
eggNOG-mapper	UHGV-0202871_39	1226322.HMPREF1545_00785	325.0	0	N/A	N/A
structural_annotation	UHGV-0202871_39	PF11134,TIGR03300,NF038126,COG1520	N/A	N/A	N/A	N/A
PHROG	UHGV-0202871_40	phrog_12105	85.2	3.9e-25	N/A	unknown function
eggNOG-mapper	UHGV-0202871_40	1519439.JPJG01000060_gene1891	62.8	0.0000000000499	N/A	N/A
PHROG	UHGV-0202871_41	phrog_435	51.8	0.000000000000015	endolysin	lysis
UniRef90	UHGV-0202871_41	UniRef90_A0A8D9PDS4	437.0	0	Cell wall hydrolase/autolysin	N/A
eggNOG-mapper	UHGV-0202871_41	1226322.HMPREF1545_01953	89.7	9.49e-19	N-acetylmuramoyl-L-alanine amidase	N/A
COG	UHGV-0202871_41	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0202871_41	PF01520,MF_00562,TIGR02883,COG0860	N/A	N/A	N/A	N/A
PHROG	UHGV-0202871_42	phrog_1129	75.4	4.7e-22	holin	lysis
UniRef90	UHGV-0202871_42	UniRef90_A0A8D9PDD4	182.0	0	Holin	N/A
eggNOG-mapper	UHGV-0202871_42	1226322.HMPREF1545_00069	110.0	1.24e-30	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-0202871_42	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0202871_42	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-0202871_43	phrog_4105	104.8	4.3e-31	N/A	unknown function
UniRef90	UHGV-0202871_43	UniRef90_A0A8D9UHA9	204.0	0	Holin protein	N/A
eggNOG-mapper	UHGV-0202871_43	411460.RUMTOR_01326	141.0	1.64933e-42	N/A	N/A
KOfam	UHGV-0202871_44	K01104	42.1	0.0000000000029	E3.1.3.48; protein-tyrosine phosphatase [EC:3.1.3.48]	N/A
UniRef90	UHGV-0202871_44	UniRef90_UPI001BF10870	179.0	2.8026e-45	Tyrosine-protein phosphatase	N/A
eggNOG-mapper	UHGV-0202871_44	4922.CAY69141	62.4	0.00000031	Saccharomyces cerevisiae YDL057w	N/A
Pfam	UHGV-0202871_44	PF13350	N/A	N/A	Tyrosine phosphatase family	Y_phosphatase3
COG	UHGV-0202871_44	COG1073	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0202871_44	PF13350,TIGR01244,COG2365	N/A	N/A	N/A	N/A
PHROG	UHGV-0202871_45	phrog_1419	57.6	1.2e-16	tail protein	tail
eggNOG-mapper	UHGV-0202871_45	763034.HMPREF9446_00480	58.5	0.00000362	N/A	N/A
PHROG	UHGV-0202871_46	phrog_15239	85.8	2.5e-25	N/A	unknown function
eggNOG-mapper	UHGV-0202871_46	1449126.JQKL01000003_gene1694	52.4	0.00000096	N/A	N/A
PHROG	UHGV-0202871_47	phrog_1357	276.8	0	major head protein	head and packaging
UniRef90	UHGV-0202871_47	UniRef90_A0A8D9UH64	616.0	0	Major capsid protein	N/A
eggNOG-mapper	UHGV-0202871_47	1449126.JQKL01000003_gene1695	397.0	0	N/A	N/A
Pfam	UHGV-0202871_47	PF13252	N/A	N/A	N/A	DUF4043
NCBIFam	UHGV-0202871_47	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-0202871_47	PF13252,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0202871_48	phrog_13908	304.3	0	N/A	unknown function
UniRef90	UHGV-0202871_48	UniRef90_A0A174CZ20	113.0	9.71e-25	Predicted ribosomal protein	N/A
eggNOG-mapper	UHGV-0202871_48	1410650.JHWL01000003_gene2831	120.0	5.01e-29	N/A	N/A
UniRef90	UHGV-0202871_49	UniRef90_A0A8D9PDR6	179.0	0	YsxB-like protein	N/A
Pfam	UHGV-0202871_49	PF04327	N/A	N/A	Cysteine protease Prp	Peptidase_Prp
structural_annotation	UHGV-0202871_49	NF011128,COG2868	N/A	N/A	N/A	N/A
PHROG	UHGV-0202871_50	phrog_156	338.3	0	portal protein	head and packaging
UniRef90	UHGV-0202871_50	UniRef90_A0A8D9UH10	1140.0	0	Portal protein	N/A
eggNOG-mapper	UHGV-0202871_50	748224.HMPREF9436_01396	535.0	0	N/A	N/A
structural_annotation	UHGV-0202871_50	PF16510,MF_04120,TIGR01538,COG4383	N/A	N/A	N/A	N/A
KOfam	UHGV-0202871_51	K06909	100.9	1.6e-29	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0202871_51	phrog_979	152.7	0	terminase large subunit	head and packaging
UniRef90	UHGV-0202871_51	UniRef90_A0A8D9PDR5	902.0	0	Large subunit terminase	N/A
eggNOG-mapper	UHGV-0202871_51	657322.FPR_02290	556.0	0	Terminase-like family	N/A
Pfam	UHGV-0202871_51	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0202871_51	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0202871_51	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
UniRef90	UHGV-0202871_52	UniRef90_A0A8D9PDT2	195.0	0	Brinker DNA-binding domain protein	N/A
eggNOG-mapper	UHGV-0202871_52	1226322.HMPREF1545_00042	137.0	4.14e-39	N/A	N/A
structural_annotation	UHGV-0202871_52	PF04218,COG3677	N/A	N/A	N/A	N/A
KOfam	UHGV-0202871_53	K22299	47.5	0.00000000000039	rghR; HTH-type transcriptional regulator, competence development regulator	N/A
PHROG	UHGV-0202871_53	phrog_8	64.5	2.1e-18	transcriptional regulator	transcription regulation
UniRef90	UHGV-0202871_53	UniRef90_A0A8D9PDC4	149.0	1.4013e-45	Repressor protein	N/A
eggNOG-mapper	UHGV-0202871_53	1226322.HMPREF1545_00039	75.9	2.78e-17	sequence-specific DNA binding	N/A
Pfam	UHGV-0202871_53	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0202871_53	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0202871_53	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-0202871_60	UniRef90_A0A8D9PDK1	73.9	0.0000000000000113	Anti-repressor	N/A
PHROG	UHGV-0202871_62	phrog_757	178.9	0	DNA methyltransferase	other
UniRef90	UHGV-0202871_62	UniRef90_UPI001C00B13F	397.0	0	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-0202871_62	748224.HMPREF9436_03069	306.0	0	DNA (cytosine-5-)-methyltransferase activity	N/A
COG	UHGV-0202871_62	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0202871_62	PF00145,MF_01872,TIGR00675,COG0270	N/A	N/A	N/A	N/A