UHGV-0203962 (vOTU-069616)

Viral Genome: UHGV-0203962

Genome Information

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Overview
UHGV ID	UHGV-0203962
vOTU ID	vOTU-069616
Representative Genome?	Yes
Source	CHVD
Original Genome ID	SAMN09781785_a1_ct71709_vs1@Siphoviridae__sp._cta5m1
Associated Biosample	N/A
Viral Genome Confidence	Confident

Quality Assessment
CheckV Method	AAI-based
CheckV Completeness	99.86 (High-quality)
Trimmed?	No
CheckV Viral Markers	17
CheckV Host Markers	1
Recoded?	No

Viral Content
geNomad score	0.9778
Viral Hallmark Genes (geNomad)	9
Plasmid Hallmark Genes (geNomad)	0
ViralVerify Prediction	Virus
ViralVerify Score	29.63
Jumbo Phage?	No

Genome Content
Length (bps)	37,153
GC Content	53.67%
Genetic Code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS Genes	56
CDS Density	90%
Average CDS Length (bps)	594.16
Total tRNA Genes	2
Suppressor tRNA Genes	0

Genome Content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 99.86)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0203962_1	K00571	221.5	0	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-0203962_1	phrog_67	196.7	0	DNA methyltransferase	other
UniRef90	UHGV-0203962_1	UniRef90_UPI00055C7461	355.0	0	site-specific DNA-methyltransferase	N/A
eggNOG-mapper	UHGV-0203962_1	1444310.JANV01000096_gene3256	171.0	0	DNA methylase	N/A
PADLOC	UHGV-0203962_1	MTase_II_00157	173.2	0	Type II methyltransferase	RM
Pfam	UHGV-0203962_1	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-0203962_1	COG2189	N/A	N/A	Adenine specific DNA methylase Mod	N/A
structural_annotation	UHGV-0203962_1	PF01555,MF_01872,NF008572,COG0863	N/A	N/A	N/A	N/A
PHROG	UHGV-0203962_3	phrog_22740	66.4	4.6e-19	N/A	unknown function
UniRef90	UHGV-0203962_3	UniRef90_G4CPK6	70.9	0.0000000000000062	Prophage L54a protein	N/A
eggNOG-mapper	UHGV-0203962_3	760568.Desku_0784	76.6	5.93e-17	DNA N-6-adenine-methyltransferase	N/A
PADLOC	UHGV-0203962_3	oMTase_00015	48.7	0.00000000000026	orphan methyltransferase	RM
Pfam	UHGV-0203962_3	PF05869	N/A	N/A	DNA N-6-adenine-methyltransferase (Dam)	Dam
structural_annotation	UHGV-0203962_4	PF04545	N/A	N/A	N/A	N/A
KOfam	UHGV-0203962_5	K03497	86.7	4.3e-25	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	N/A
PHROG	UHGV-0203962_5	phrog_4715	112.2	3.4e-33	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0203962_5	UniRef90_A0A2A7B6Q0	281.0	0	ParB domain-containing protein	N/A
eggNOG-mapper	UHGV-0203962_5	411471.SUBVAR_05842	150.0	7.48e-38	ParB-like nuclease domain	N/A
Pfam	UHGV-0203962_5	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
COG	UHGV-0203962_5	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-0203962_5	PF02195,MF_02015,TIGR03764,COG1475	N/A	N/A	N/A	N/A
Pfam	UHGV-0203962_6	PF04448	N/A	N/A	N/A	DUF551
structural_annotation	UHGV-0203962_6	PF04448	N/A	N/A	N/A	N/A
KOfam	UHGV-0203962_7	K03496	204.8	0	parA, soj; chromosome partitioning protein	N/A
PHROG	UHGV-0203962_7	phrog_164	147.2	9.94922e-44	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0203962_7	UniRef90_A0A2A7B6H3	272.0	0	AAA_31 domain-containing protein	N/A
eggNOG-mapper	UHGV-0203962_7	411471.SUBVAR_05839	201.0	0	AAA domain	N/A
Pfam	UHGV-0203962_7	PF13614	N/A	N/A	AAA domain	AAA_31
COG	UHGV-0203962_7	COG1192	N/A	N/A	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	N/A
structural_annotation	UHGV-0203962_7	PF13614,MF_00533,TIGR03453,COG1192	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0203962_9	748224.HMPREF9436_00735	146.0	6.14e-39	N/A	N/A
Pfam	UHGV-0203962_9	PF19481	N/A	N/A	N/A	DUF6017
COG	UHGV-0203962_9	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0203962_9	PF19481,PF01978,MF_01819,TIGR01610,COG5625	N/A	N/A	N/A	N/A
KOfam	UHGV-0203962_10	K03111	141.5	8.09951e-42	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0203962_10	phrog_44	139.6	1.70006e-41	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0203962_10	UniRef90_A0A2A7B6R5	247.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0203962_10	411483.FAEPRAA2165_01975	198.0	0	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-0203962_10	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0203962_10	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0203962_10	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0203962_10	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0203962_10	PF00436,MF_00984,NF005579,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0203962_11	phrog_7566	83.1	2.1e-24	N/A	unknown function
eggNOG-mapper	UHGV-0203962_11	411471.SUBVAR_05830	104.0	8.45e-28	N/A	N/A
PHROG	UHGV-0203962_12	phrog_72	49.8	0.000000000000055	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0203962_12	411471.SUBVAR_05829	145.0	1.02995e-41	N/A	N/A
structural_annotation	UHGV-0203962_12	PF05772,NF007281	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0203962_13	PF04098,TIGR00607,COG4712	N/A	N/A	N/A	N/A
Pfam	UHGV-0203962_20	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
UniRef90	UHGV-0203962_21	UniRef90_A0A2A7AM72	108.0	4.55e-29	HTH cro/C1-type domain-containing protein	N/A
PHROG	UHGV-0203962_22	phrog_17982	105.5	4.1e-31	N/A	unknown function
UniRef90	UHGV-0203962_22	UniRef90_UPI000953497E	57.4	0.00000011	N/A	N/A
eggNOG-mapper	UHGV-0203962_22	720554.Clocl_1541	98.2	4.5e-22	N/A	N/A
Pfam	UHGV-0203962_22	PF14020	N/A	N/A	N/A	DUF4236
KOfam	UHGV-0203962_23	K10421	46.4	0.00000000000024	CLIP1, RSN; CAP-Gly domain-containing linker protein 1	N/A
PHROG	UHGV-0203962_23	phrog_1847	343.2	0	N/A	unknown function
UniRef90	UHGV-0203962_23	UniRef90_D1PLA1	526.0	0	T5orf172 domain-containing protein	N/A
eggNOG-mapper	UHGV-0203962_23	411471.SUBVAR_05139	526.0	0	T5orf172	N/A
Pfam	UHGV-0203962_23	PF13455	N/A	N/A	Meiotically up-regulated gene 113	MUG113
COG	UHGV-0203962_23	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-0203962_23	PF13250,NF041454	N/A	N/A	N/A	N/A
KOfam	UHGV-0203962_26	K07729	42.8	0.0000000000082	K07729; putative transcriptional regulator	N/A
PHROG	UHGV-0203962_26	phrog_1373	44.0	0.000000000001	transcriptional regulator	transcription regulation
UniRef90	UHGV-0203962_26	UniRef90_A0A2A7AM70	213.0	0	HTH cro/C1-type domain-containing protein	N/A
Pfam	UHGV-0203962_26	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0203962_26	COG1813	N/A	N/A	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	N/A
structural_annotation	UHGV-0203962_26	PF13560,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0203962_27	K14059	195.5	0	int; integrase	N/A
PHROG	UHGV-0203962_27	phrog_1	189.3	0	integrase	integration and excision
UniRef90	UHGV-0203962_27	UniRef90_A0A367GI93	267.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-0203962_27	1507.HMPREF0262_00307	187.0	0	Phage integrase family	N/A
Pfam	UHGV-0203962_27	PF13495	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
Pfam	UHGV-0203962_27	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0203962_27	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0203962_27	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0203962_28	1378168.N510_03079	82.8	7.7e-17	N/A	N/A
structural_annotation	UHGV-0203962_29	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-0203962_30	phrog_16490	43.7	0.0000000000011	N/A	unknown function
eggNOG-mapper	UHGV-0203962_30	641112.ACOK01000103_gene525	77.8	0.00000000000000832	N/A	N/A
PHROG	UHGV-0203962_34	phrog_25567	41.3	0.000000000019	N/A	unknown function
COG	UHGV-0203962_34	COG2944	N/A	N/A	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	N/A
structural_annotation	UHGV-0203962_34	PF13560,NF040522	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0203962_36	PF04545,MF_00245,NF001074,COG2739	N/A	N/A	N/A	N/A
PHROG	UHGV-0203962_38	phrog_15303	78.5	6.7e-23	N/A	unknown function
KOfam	UHGV-0203962_40	K07273	151.6	7.00649e-45	acm; lysozyme	N/A
PHROG	UHGV-0203962_40	phrog_291	100.8	1.4e-29	endolysin	lysis
UniRef90	UHGV-0203962_40	UniRef90_A0A564U0D3	377.0	0	Autolytic lysozyme	N/A
eggNOG-mapper	UHGV-0203962_40	718252.FP2_04890	236.0	0	hydrolase, family 25	N/A
Pfam	UHGV-0203962_40	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-0203962_40	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-0203962_40	PF01183,TIGR04053,COG3757	N/A	N/A	N/A	N/A
UniRef90	UHGV-0203962_41	UniRef90_UPI001B3C8358	220.0	0	BppU family phage baseplate upper protein	N/A
PHROG	UHGV-0203962_42	phrog_3558	187.1	0	tail protein	tail
UniRef90	UHGV-0203962_42	UniRef90_A0A8B3ALT8	157.0	6.17e-37	Prophage_tail domain-containing protein	N/A
eggNOG-mapper	UHGV-0203962_42	411460.RUMTOR_00484	152.0	3.72e-36	Prophage endopeptidase tail	N/A
Pfam	UHGV-0203962_42	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
COG	UHGV-0203962_42	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0203962_42	PF14594,TIGR01665,COG4379	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0203962_43	1120933.ATUY01000002_gene165	84.7	9.66e-18	N/A	N/A
structural_annotation	UHGV-0203962_43	PF05709,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0203962_44	phrog_6900	235.9	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0203962_44	748224.HMPREF9436_00699	507.0	0	Phage tail tape measure protein, TP901 family	N/A
COG	UHGV-0203962_44	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0203962_44	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0203962_45	phrog_1633	67.0	2.7e-19	N/A	unknown function
UniRef90	UHGV-0203962_45	UniRef90_UPI0007F385C4	64.7	0.0000000000627	N/A	N/A
eggNOG-mapper	UHGV-0203962_45	883110.HMPREF9260_00651	59.7	0.000000000765	N/A	N/A
structural_annotation	UHGV-0203962_45	PF17318	N/A	N/A	N/A	N/A
PHROG	UHGV-0203962_46	phrog_1526	85.2	5.1e-25	N/A	unknown function
eggNOG-mapper	UHGV-0203962_46	879308.HMPREF9130_1240	57.8	0.00000000102	N/A	N/A
PHROG	UHGV-0203962_47	phrog_117	162.2	0	major tail protein	tail
UniRef90	UHGV-0203962_47	UniRef90_E2ZGB2	248.0	0	Prophage LambdaSa1, structural protein	N/A
eggNOG-mapper	UHGV-0203962_47	748224.HMPREF9436_00696	248.0	0	domain, Protein	N/A
COG	UHGV-0203962_47	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0203962_47	PF04630,TIGR01603,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0203962_48	phrog_123	44.7	0.0000000000021	tail terminator	connector
UniRef90	UHGV-0203962_48	UniRef90_R6D1D5	93.2	2.48e-22	N/A	N/A
eggNOG-mapper	UHGV-0203962_48	748224.HMPREF9436_00695	143.0	4.66632e-43	N/A	N/A
structural_annotation	UHGV-0203962_48	PF06141	N/A	N/A	N/A	N/A
PHROG	UHGV-0203962_49	phrog_387	65.5	6.6e-19	neck protein	connector
UniRef90	UHGV-0203962_49	UniRef90_A0A139NAV7	57.0	0.00000000506	Phage-associated protein	N/A
eggNOG-mapper	UHGV-0203962_49	1289597.M1PKU8_9CAUD	62.4	0.00000000000654	N/A	N/A
PHROG	UHGV-0203962_50	phrog_501	63.6	3.1e-18	head closure Hc1	connector
eggNOG-mapper	UHGV-0203962_50	748224.HMPREF9436_00693	152.0	0	N/A	N/A
structural_annotation	UHGV-0203962_50	PF12206,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0203962_51	phrog_137	68.5	7.4e-20	head-tail adaptor Ad1	connector
UniRef90	UHGV-0203962_51	UniRef90_E2ZGA8	183.0	0	Phage protein Gp19/Gp15/Gp42	N/A
eggNOG-mapper	UHGV-0203962_51	1437608.BBIA_2150	50.1	0.00000923	Phage protein Gp19/Gp15/Gp42	N/A
structural_annotation	UHGV-0203962_51	PF09355	N/A	N/A	N/A	N/A
PHROG	UHGV-0203962_52	phrog_10	135.6	4.39999e-40	major head protein	head and packaging
UniRef90	UHGV-0203962_52	UniRef90_A0A1Y4TJU9	441.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0203962_52	748224.HMPREF9436_00690	462.0	0	Phage capsid family	N/A
Pfam	UHGV-0203962_52	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0203962_52	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0203962_52	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0203962_52	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0203962_53	phrog_194	66.1	5.7e-19	head scaffolding protein	head and packaging
UniRef90	UHGV-0203962_53	UniRef90_D4K444	237.0	0	Phage minor structural protein GP20	N/A
eggNOG-mapper	UHGV-0203962_53	748224.HMPREF9436_03336	197.0	0	Phage minor structural protein GP20	N/A
Pfam	UHGV-0203962_53	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-0203962_53	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0203962_54	phrog_193	127.6	1.3e-37	head maturation protease	head and packaging
UniRef90	UHGV-0203962_54	UniRef90_A0A6N8H118	329.0	0	CdiA_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0203962_54	748224.HMPREF9436_01469	324.0	0	N/A	N/A
COG	UHGV-0203962_54	COG5529	N/A	N/A	Phage-encoded DNA-binding protein ECs1768, contains HTH and DnaT DNA-binding domains	N/A
PHROG	UHGV-0203962_55	phrog_104	210.6	0	portal protein	head and packaging
UniRef90	UHGV-0203962_55	UniRef90_A0A3E2U200	759.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0203962_55	748224.HMPREF9436_01468	736.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0203962_55	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0203962_55	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0203962_56	phrog_9	168.7	0	terminase large subunit	head and packaging
UniRef90	UHGV-0203962_56	UniRef90_UPI001F1A3C47	632.0	0	terminase large subunit	N/A
eggNOG-mapper	UHGV-0203962_56	748224.HMPREF9436_01467	795.0	0	phage terminase, large subunit	N/A
COG	UHGV-0203962_56	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0203962_56	PF20441,PF03354,MF_04146,NF033889,COG4626	N/A	N/A	N/A	N/A