UHGV-0204726 (vOTU-105198)

Viral Genome: UHGV-0204726

Genome Information

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Overview
UHGV ID	UHGV-0204726
vOTU ID	vOTU-105198
Representative Genome?	Yes
Source	CHVD
Original Genome ID	SAMN10290178_a1_ct8901_vs1@linear@Siphoviridae__sp._ctBbp1
Associated Biosample	N/A
Viral Genome Confidence	Confident

Quality Assessment
CheckV Method	HMM-based
CheckV Completeness	53.71 (Medium-quality)
Trimmed?	No
CheckV Viral Markers	8
CheckV Host Markers	0
Recoded?	No

Viral Content
geNomad score	0.9567
Viral Hallmark Genes (geNomad)	2
Plasmid Hallmark Genes (geNomad)	0
ViralVerify Prediction	Virus
ViralVerify Score	36.42
Jumbo Phage?	No

Genome Content
Length (bps)	33,443
GC Content	43.92%
Genetic Code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS Genes	48
CDS Density	97%
Average CDS Length (bps)	674.69
Total tRNA Genes	0
Suppressor tRNA Genes	0

Genome Content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 53.71)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0204726_1	phrog_1227	224.3	0	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0204726_1	UniRef90_A0A1V6B6A2	271.0	0	N/A	N/A
eggNOG-mapper	UHGV-0204726_1	1120998.AUFC01000030_gene2216	224.0	0	N/A	N/A
Pfam	UHGV-0204726_1	PF12684	N/A	N/A	N/A	DUF3799
COG	UHGV-0204726_1	COG1074	N/A	N/A	3'-5' helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V)	N/A
structural_annotation	UHGV-0204726_1	PF12684,TIGR01896,COG4343	N/A	N/A	N/A	N/A
PHROG	UHGV-0204726_2	phrog_21613	85.3	5.8e-25	N/A	unknown function
eggNOG-mapper	UHGV-0204726_2	1120998.AUFC01000030_gene2214	136.0	2.42e-38	N/A	N/A
KOfam	UHGV-0204726_5	K03111	76.9	4.2e-22	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0204726_5	phrog_44	80.6	2.8e-23	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0204726_5	UniRef90_A0A3D5ZN53	79.3	3.41e-16	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0204726_5	469617.FUAG_01973	66.6	0.00000000000504	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-0204726_5	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0204726_5	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0204726_5	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0204726_5	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
KOfam	UHGV-0204726_6	K00571	133.9	1.5e-39	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-0204726_6	phrog_67	122.4	1.1e-36	DNA methyltransferase	other
UniRef90	UHGV-0204726_6	UniRef90_UPI001CA3D3EB	224.0	0	site-specific DNA-methyltransferase	N/A
eggNOG-mapper	UHGV-0204726_6	573064.Mefer_0896	105.0	4.2e-24	PFAM DNA methylase N-4 N-6 domain protein	N/A
PADLOC	UHGV-0204726_6	MTase_II_00157	117.9	1.6e-34	Type II methyltransferase	RM
Pfam	UHGV-0204726_6	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-0204726_6	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-0204726_6	PF01555,MF_01872,NF008572,COG0863	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0204726_7	1232453.BAIF02000010_gene3342	79.0	6.45e-17	Recombination protein U	N/A
structural_annotation	UHGV-0204726_7	PF03838,MF_01490,NF040854,COG1591	N/A	N/A	N/A	N/A
KOfam	UHGV-0204726_8	K18959	203.3	0	uvsW; ATP-dependent DNA helicase UvsW [EC:5.6.2.4]	N/A
PHROG	UHGV-0204726_8	phrog_16	203.1	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0204726_8	UniRef90_A0A3D2MTJ6	418.0	0	DNA or RNA helicase of superfamily II	N/A
eggNOG-mapper	UHGV-0204726_8	1449050.JNLE01000003_gene3908	321.0	0	Type III restriction protein res subunit	N/A
PADLOC	UHGV-0204726_8	mREase_IV_00004	69.5	3e-20	Type IV methyl-directed restriction enzyme	RM
Pfam	UHGV-0204726_8	PF04851	N/A	N/A	Type III restriction enzyme, res subunit	ResIII
Pfam	UHGV-0204726_8	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-0204726_8	COG1061	N/A	N/A	Superfamily II DNA or RNA helicase	N/A
structural_annotation	UHGV-0204726_8	PF04851,PF16203,MF_01489,TIGR00603,COG1061	N/A	N/A	N/A	N/A
PHROG	UHGV-0204726_12	phrog_3136	98.5	3.8e-29	N/A	unknown function
UniRef90	UHGV-0204726_12	UniRef90_A0A3D0HBD2	92.4	4e-20	ASCH domain-containing protein	N/A
COG	UHGV-0204726_12	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
structural_annotation	UHGV-0204726_12	PF08819,MF_00684,NF008917,COG4933	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0204726_14	445971.ANASTE_00955	76.3	0.000000000000277	N/A	N/A
structural_annotation	UHGV-0204726_16	MF_01302_B	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0204726_18	PF04606,NF007241	N/A	N/A	N/A	N/A
KOfam	UHGV-0204726_20	K06919	93.1	2.8e-27	K06919; putative DNA primase/helicase	N/A
PHROG	UHGV-0204726_20	phrog_1829	770.2	0	DNA primase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0204726_20	UniRef90_A0A3D2MTX0	803.0	0	DNA primase	N/A
eggNOG-mapper	UHGV-0204726_20	1347392.CCEZ01000005_gene1217	640.0	0	Phage plasmid primase, P4 family	N/A
Pfam	UHGV-0204726_20	PF08706	N/A	N/A	D5 N terminal like	D5_N
Pfam	UHGV-0204726_20	PF19263	N/A	N/A	N/A	DUF5906
Pfam	UHGV-0204726_20	PF03288	N/A	N/A	Poxvirus D5 protein-like	Pox_D5
NCBIFam	UHGV-0204726_20	TIGR01613.1	N/A	N/A	phage/plasmid primase, P4 family	N/A
COG	UHGV-0204726_20	COG3378	N/A	N/A	DNA primase, phage- or plasmid-associated	N/A
structural_annotation	UHGV-0204726_20	PF08706,PF05272,PF02257,MF_04000,NF011296,COG3378,COG4983	N/A	N/A	N/A	N/A
KOfam	UHGV-0204726_21	K07451	43.9	0.0000000000042	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	N/A
PHROG	UHGV-0204726_21	phrog_144	79.5	4.6e-23	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0204726_21	UniRef90_A0A218MNA6	116.0	2.32e-31	HNHc domain-containing protein	N/A
eggNOG-mapper	UHGV-0204726_21	1408422.JHYF01000021_gene992	108.0	4.11e-29	HNH endonuclease	N/A
Pfam	UHGV-0204726_21	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0204726_21	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-0204726_21	PF01844,COG1403	N/A	N/A	N/A	N/A
KOfam	UHGV-0204726_22	K00571	148.7	4.76441e-44	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-0204726_22	phrog_67	134.5	1.99993e-41	DNA methyltransferase	other
UniRef90	UHGV-0204726_22	UniRef90_A0A3E3E030	281.0	0	Methyltransferase	N/A
eggNOG-mapper	UHGV-0204726_22	469596.HMPREF9488_00879	191.0	0	DNA methylase	N/A
PADLOC	UHGV-0204726_22	MTase_II_00157	147.5	6.86636e-44	Type II methyltransferase	RM
Pfam	UHGV-0204726_22	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-0204726_22	COG2189	N/A	N/A	Adenine specific DNA methylase Mod	N/A
structural_annotation	UHGV-0204726_22	PF01555,MF_01872,NF008572,COG0863	N/A	N/A	N/A	N/A
Pfam	UHGV-0204726_24	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
KOfam	UHGV-0204726_26	K07317	63.1	3.7e-18	K07317; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	N/A
PHROG	UHGV-0204726_26	phrog_11371	52.7	0.000000000000005	N/A	unknown function
UniRef90	UHGV-0204726_26	UniRef90_A0A1C6BWK1	102.0	5.37e-25	Modification methylase VspI	N/A
eggNOG-mapper	UHGV-0204726_26	926569.ANT_31700	96.3	2.02e-22	site-specific DNA-methyltransferase (adenine-specific) activity	N/A
COG	UHGV-0204726_26	COG0286	N/A	N/A	Type I restriction-modification system, DNA methylase subunit	N/A
structural_annotation	UHGV-0204726_26	PF20473,NF041658	N/A	N/A	N/A	N/A
KOfam	UHGV-0204726_27	K04763	128.3	8.3e-38	xerD; integrase/recombinase XerD	N/A
PHROG	UHGV-0204726_27	phrog_1	117.2	1.9e-34	integrase	integration and excision
UniRef90	UHGV-0204726_27	UniRef90_A0A014LZ44	175.0	0	Integrase-recombinase	N/A
eggNOG-mapper	UHGV-0204726_27	1298920.KI911353_gene208	176.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0204726_27	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0204726_27	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
PHROG	UHGV-0204726_28	phrog_9	264.5	0	terminase large subunit	head and packaging
UniRef90	UHGV-0204726_28	UniRef90_A0A4V0Y190	420.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0204726_28	1262914.BN533_00200	388.0	0	terminase, large subunit	N/A
Pfam	UHGV-0204726_28	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0204726_28	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0204726_28	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0204726_28	PF20441,PF03354,MF_04145,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0204726_29	phrog_12	292.8	0	portal protein	head and packaging
UniRef90	UHGV-0204726_29	UniRef90_A0A3E2XWZ9	251.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0204726_29	536232.CLM_2933	213.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-0204726_29	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0204726_29	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0204726_29	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0204726_29	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-0204726_30	K01358	128.0	1e-37	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0204726_30	phrog_94	222.5	0	head maturation protease	head and packaging
UniRef90	UHGV-0204726_30	UniRef90_A0A151B7G9	168.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-0204726_30	1234664.AMRO01000024_gene1807	166.0	0	Serine dehydrogenase proteinase	N/A
Pfam	UHGV-0204726_30	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0204726_30	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0204726_30	PF00574,MF_00444,NF011090,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0204726_31	phrog_10	127.3	1.4e-37	major head protein	head and packaging
UniRef90	UHGV-0204726_31	UniRef90_A0A096AZU3	229.0	0	HK97 family phage major capsid protein	N/A
eggNOG-mapper	UHGV-0204726_31	742738.HMPREF9460_04071	229.0	0	phage major capsid protein, HK97 family	N/A
Pfam	UHGV-0204726_31	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0204726_31	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0204726_31	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0204726_31	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
Pfam	UHGV-0204726_33	PF05521	N/A	N/A	Phage head-tail joining protein	Phage_H_T_join
PHROG	UHGV-0204726_39	phrog_9483	54.6	0.0000000000000013	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0204726_39	1278311.AUAL01000001_gene20	67.0	0.00000000881	phage tail tape measure protein	N/A
COG	UHGV-0204726_39	COG4372	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0204726_39	TIGR01760,COG5280	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0204726_40	PF16774,PF21766,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0204726_41	phrog_7064	42.3	0.0000000000012	tail protein	tail
structural_annotation	UHGV-0204726_41	PF14594,NF033848,COG4379	N/A	N/A	N/A	N/A
PHROG	UHGV-0204726_46	phrog_31460	44.8	0.0000000000019	tail protein	tail
eggNOG-mapper	UHGV-0204726_46	1201288.M900_2187	71.2	0.000000000739	YadA-like membrane anchor domain	N/A
COG	UHGV-0204726_46	COG3210	N/A	N/A	Large exoprotein involved in heme utilization or adhesion	N/A