UHGV-0207175 (vOTU-048178)

Viral Genome: UHGV-0207175

Genome Information

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Overview
UHGV ID	UHGV-0207175
vOTU ID	vOTU-048178
Representative Genome?	Yes
Source	CHVD
Original Genome ID	SAMN10290212_a1_ct818@circular@Siphoviridae__sp._ctBCr818
Associated Biosample	SAMN10290212
Viral Genome Confidence	Confident

Quality Assessment
CheckV Method	DTR
CheckV Completeness	100 (Complete)
Trimmed?	No
CheckV Viral Markers	20
CheckV Host Markers	0
Recoded?	No

Viral Content
geNomad score	0.9809
Viral Hallmark Genes (geNomad)	9
Plasmid Hallmark Genes (geNomad)	0
ViralVerify Prediction	Virus
ViralVerify Score	44.45
Jumbo Phage?	No

Genome Content
Length (bps)	36,396
GC Content	40.87%
Genetic Code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS Genes	54
CDS Density	89%
Average CDS Length (bps)	600.50
Total tRNA Genes	1
Suppressor tRNA Genes	0

Genome Content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0207175_1	phrog_309	199.3	0	terminase small subunit	head and packaging
UniRef90	UHGV-0207175_1	UniRef90_A0A2N5PKF8	269.0	0	Transposase	N/A
eggNOG-mapper	UHGV-0207175_1	1035196.HMPREF9998_01273	189.0	0	HNH endonuclease	N/A
COG	UHGV-0207175_1	COG2963	N/A	N/A	Transposase InsE and inactivated derivatives	N/A
structural_annotation	UHGV-0207175_1	PF07141	N/A	N/A	N/A	N/A
KOfam	UHGV-0207175_2	K06909	83.8	2.4e-24	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0207175_2	phrog_2	85.9	7.2e-25	terminase large subunit	head and packaging
UniRef90	UHGV-0207175_2	UniRef90_A7B3T0	842.0	0	Phage terminase, large subunit, PBSX family	N/A
eggNOG-mapper	UHGV-0207175_2	411470.RUMGNA_02211	842.0	0	N/A	N/A
Pfam	UHGV-0207175_2	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0207175_2	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0207175_2	PF04466,PF20441,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0207175_3	phrog_533	330.7	0	portal protein	head and packaging
UniRef90	UHGV-0207175_3	UniRef90_A7B3T1	776.0	0	Putative phage minor capsid protein	N/A
eggNOG-mapper	UHGV-0207175_3	411470.RUMGNA_02212	776.0	0	N/A	N/A
structural_annotation	UHGV-0207175_3	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0207175_4	phrog_581	343.8	0	minor head protein	head and packaging
UniRef90	UHGV-0207175_4	UniRef90_UPI001EE14397	682.0	0	phage minor capsid protein	N/A
eggNOG-mapper	UHGV-0207175_4	658655.HMPREF0988_02563	653.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-0207175_4	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0207175_4	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0207175_4	PF06152	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0207175_5	411470.RUMGNA_02214	169.0	0	N/A	N/A
structural_annotation	UHGV-0207175_5	PF08948,MF_01537,NF007541,COG3123	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0207175_6	411470.RUMGNA_02215	337.0	0	N/A	N/A
structural_annotation	UHGV-0207175_8	NF040910	N/A	N/A	N/A	N/A
PHROG	UHGV-0207175_9	phrog_355	61.2	1.5e-17	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0207175_9	UniRef90_UPI00046757E3	198.0	0	N/A	N/A
eggNOG-mapper	UHGV-0207175_9	97138.C820_00250	129.0	1.01e-37	N/A	N/A
Pfam	UHGV-0207175_9	PF14359	N/A	N/A	N/A	DUF4406
structural_annotation	UHGV-0207175_9	PF14359,COG3613	N/A	N/A	N/A	N/A
PHROG	UHGV-0207175_10	phrog_194	115.9	3.9e-34	head scaffolding protein	head and packaging
UniRef90	UHGV-0207175_10	UniRef90_A5KPA4	288.0	0	Phage minor structural protein GP20	N/A
eggNOG-mapper	UHGV-0207175_10	411470.RUMGNA_02218	302.0	0	COG NOG36366 non supervised orthologous group	N/A
Pfam	UHGV-0207175_10	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-0207175_10	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0207175_11	phrog_422	241.5	0	major head protein	head and packaging
eggNOG-mapper	UHGV-0207175_11	658655.HMPREF0988_02560	506.0	0	N/A	N/A
structural_annotation	UHGV-0207175_11	PF21703,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
PHROG	UHGV-0207175_12	phrog_541	105.4	3.7e-31	head-tail adaptor	connector
eggNOG-mapper	UHGV-0207175_12	411470.RUMGNA_02220	224.0	0	N/A	N/A
PHROG	UHGV-0207175_13	phrog_3366	90.2	7.9e-27	N/A	unknown function
eggNOG-mapper	UHGV-0207175_13	411470.RUMGNA_02221	221.0	0	N/A	N/A
Pfam	UHGV-0207175_13	PF20536	N/A	N/A	N/A	DUF6751
structural_annotation	UHGV-0207175_13	PF20536,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0207175_14	phrog_556	143.8	3.9937e-43	minor head protein	head and packaging
UniRef90	UHGV-0207175_14	UniRef90_UPI001C8E2A32	234.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-0207175_14	411470.RUMGNA_02222	231.0	0	N/A	N/A
structural_annotation	UHGV-0207175_14	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-0207175_15	phrog_3266	154.1	0	tail completion	connector
UniRef90	UHGV-0207175_15	UniRef90_UPI001F2730AA	137.0	3.86e-39	chloramphenicol resistance protein	N/A
eggNOG-mapper	UHGV-0207175_15	411470.RUMGNA_02223	270.0	0	N/A	N/A
structural_annotation	UHGV-0207175_15	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-0207175_16	phrog_3099	156.1	0	N/A	unknown function
eggNOG-mapper	UHGV-0207175_16	411470.RUMGNA_02224	290.0	0	N/A	N/A
structural_annotation	UHGV-0207175_16	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0207175_17	phrog_4450	115.3	3.6e-34	N/A	unknown function
UniRef90	UHGV-0207175_17	UniRef90_UPI0018AB083C	59.7	0.00000000784	AP endonuclease	N/A
eggNOG-mapper	UHGV-0207175_17	411470.RUMGNA_02225	212.0	0	N/A	N/A
Pfam	UHGV-0207175_17	PF20378	N/A	N/A	N/A	DUF6673
structural_annotation	UHGV-0207175_17	PF20378	N/A	N/A	N/A	N/A
PHROG	UHGV-0207175_18	phrog_706	150.4	8.40779e-45	N/A	unknown function
UniRef90	UHGV-0207175_18	UniRef90_A7B3U5	332.0	0	Bacteriophage Gp15 protein	N/A
eggNOG-mapper	UHGV-0207175_18	411470.RUMGNA_02226	332.0	0	COG NOG24969 non supervised orthologous group	N/A
Pfam	UHGV-0207175_18	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0207175_18	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0207175_19	phrog_9959	165.2	0	tail length tape measure protein	tail
UniRef90	UHGV-0207175_19	UniRef90_A0A8B3C0A6	782.0	0	TMP_3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0207175_19	411470.RUMGNA_02228	785.0	0	tape measure	N/A
Pfam	UHGV-0207175_19	PF20155	N/A	N/A	Tape measure protein	TMP_3
NCBIFam	UHGV-0207175_19	TIGR02675.1	N/A	N/A	tape measure protein	N/A
COG	UHGV-0207175_19	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-0207175_19	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0207175_20	phrog_202	319.5	0	distal tail protein Dit	tail
UniRef90	UHGV-0207175_20	UniRef90_A7B3U8	771.0	0	Putative phage tail component domain protein	N/A
eggNOG-mapper	UHGV-0207175_20	411470.RUMGNA_02229	771.0	0	N/A	N/A
Pfam	UHGV-0207175_20	PF05709	N/A	N/A	Phage tail protein RIFT-related domain	Sipho_tail
NCBIFam	UHGV-0207175_20	TIGR01633.1	N/A	N/A	distal tail protein Dit	N/A
COG	UHGV-0207175_20	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0207175_20	PF05709,PF21708,TIGR01633,NF041449,COG4722,COG3506	N/A	N/A	N/A	N/A
PHROG	UHGV-0207175_21	phrog_588	590.5	0	tail fiber protein and host specificity	tail
UniRef90	UHGV-0207175_21	UniRef90_UPI001BC866A2	919.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-0207175_21	411470.RUMGNA_02230	847.0	0	N/A	N/A
Pfam	UHGV-0207175_21	PF21470	N/A	N/A	Minor structural protein 5-like, C-terminal domain	BppU-like_C
PHROG	UHGV-0207175_22	phrog_199	59.8	3.3e-17	holin	lysis
UniRef90	UHGV-0207175_22	UniRef90_A0A6N3GN23	257.0	0	Holin family protein	N/A
eggNOG-mapper	UHGV-0207175_22	476272.RUMHYD_02872	254.0	0	N/A	N/A
Pfam	UHGV-0207175_22	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-0207175_22	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
structural_annotation	UHGV-0207175_22	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
KOfam	UHGV-0207175_23	K01448	101.6	9.6e-30	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0207175_23	phrog_435	157.5	0	endolysin	lysis
UniRef90	UHGV-0207175_23	UniRef90_A0A4R3JAD4	684.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-0207175_23	411470.RUMGNA_02814	233.0	0	Ami_3	N/A
Pfam	UHGV-0207175_23	PF01520	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_3
COG	UHGV-0207175_23	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0207175_23	PF01520,MF_00562,TIGR02883,COG0860,COG5492	N/A	N/A	N/A	N/A
KOfam	UHGV-0207175_24	K23779	44.1	0.0000000000042	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	N/A
UniRef90	UHGV-0207175_24	UniRef90_S2ZLJ4	280.0	0	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0207175_24	411470.RUMGNA_03786	222.0	0	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0207175_24	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0207175_24	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0207175_24	PF01381,MF_02017,NF041951,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-0207175_27	UniRef90_R6RYB6	60.5	0.00000000604	Thermophilus bacteriophage protein	N/A
eggNOG-mapper	UHGV-0207175_27	411470.RUMGNA_03785	222.0	0	N/A	N/A
UniRef90	UHGV-0207175_28	UniRef90_R6NQM1	78.6	0.0000000000000383	Putative TnpX site-specific recombinase	N/A
eggNOG-mapper	UHGV-0207175_28	478749.BRYFOR_07651	223.0	0	N/A	N/A
structural_annotation	UHGV-0207175_28	TIGR03826	N/A	N/A	N/A	N/A
KOfam	UHGV-0207175_29	K14059	78.5	1e-22	int; integrase	N/A
PHROG	UHGV-0207175_29	phrog_1	113.0	1.6e-33	integrase	integration and excision
UniRef90	UHGV-0207175_29	UniRef90_A0A3A5TEW4	744.0	0	Integrase	N/A
eggNOG-mapper	UHGV-0207175_29	1232453.BAIF02000010_gene3323	444.0	0	Phage integrase family	N/A
Pfam	UHGV-0207175_29	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0207175_29	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0207175_29	PF00589,MF_01808,TIGR02224,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-0207175_30	phrog_7974	57.5	1.5e-16	N/A	unknown function
UniRef90	UHGV-0207175_30	UniRef90_A7B3P6	431.0	0	N/A	N/A
eggNOG-mapper	UHGV-0207175_30	411470.RUMGNA_02177	431.0	0	belongs to the thioredoxin family	N/A
Pfam	UHGV-0207175_30	PF14020	N/A	N/A	N/A	DUF4236
COG	UHGV-0207175_30	COG3118	N/A	N/A	Chaperedoxin CnoX, contains thioredoxin-like and TPR-like domains, YbbN/TrxSC family	N/A
structural_annotation	UHGV-0207175_30	PF14020,PF02368,COG1721	N/A	N/A	N/A	N/A
KOfam	UHGV-0207175_32	K18830	69.2	5.2e-20	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-0207175_32	phrog_4	57.1	4.9e-16	transcriptional repressor	transcription regulation
UniRef90	UHGV-0207175_32	UniRef90_S2YNK0	251.0	0	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0207175_32	1235798.C817_05486	146.0	7.56701e-44	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0207175_32	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0207175_32	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0207175_32	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0207175_34	phrog_750	78.2	7.2e-23	N/A	unknown function
eggNOG-mapper	UHGV-0207175_34	742723.HMPREF9477_00931	120.0	3.73e-34	N/A	N/A
structural_annotation	UHGV-0207175_34	PF13835,NF040858	N/A	N/A	N/A	N/A
KOfam	UHGV-0207175_36	K07741	93.1	6.9e-27	antB; anti-repressor protein	N/A
PHROG	UHGV-0207175_36	phrog_63	190.0	0	anti-repressor Ant	transcription regulation
UniRef90	UHGV-0207175_36	UniRef90_S2Z7Q9	465.0	0	Rha family phage regulatory protein	N/A
eggNOG-mapper	UHGV-0207175_36	262071.A3QSE0_9CAUD	223.0	0	DNA binding	N/A
Pfam	UHGV-0207175_36	PF09669	N/A	N/A	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
Pfam	UHGV-0207175_36	PF03374	N/A	N/A	Phage antirepressor protein KilAC domain	ANT
NCBIFam	UHGV-0207175_36	TIGR02681.1	N/A	N/A	phage regulatory protein, Rha family	N/A
structural_annotation	UHGV-0207175_36	PF03374,PF08346,TIGR02681,COG3645,COG3561	N/A	N/A	N/A	N/A
PHROG	UHGV-0207175_37	phrog_374	220.4	0	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0207175_37	UniRef90_A0A7W0C2S3	174.0	0	Putative transcriptional regulator	N/A
eggNOG-mapper	UHGV-0207175_37	397290.C810_01484	175.0	0	N/A	N/A
structural_annotation	UHGV-0207175_37	PF17375	N/A	N/A	N/A	N/A
PHROG	UHGV-0207175_42	phrog_14970	288.8	0	N/A	unknown function
eggNOG-mapper	UHGV-0207175_42	411468.CLOSCI_00315	253.0	0	double-strand break repair protein	N/A
COG	UHGV-0207175_42	COG4712	N/A	N/A	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	N/A
structural_annotation	UHGV-0207175_42	PF04098,TIGR00607,COG4712	N/A	N/A	N/A	N/A
PHROG	UHGV-0207175_43	phrog_72	41.5	0.0000000000073	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0207175_43	411490.ANACAC_00804	137.0	4.47e-38	N/A	N/A
structural_annotation	UHGV-0207175_43	PF05772,NF007281	N/A	N/A	N/A	N/A
KOfam	UHGV-0207175_44	K01160	55.5	0.0000000000000016	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0207175_44	phrog_140	135.9	2.1e-40	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0207175_44	UniRef90_A7B3R6	213.0	0	Crossover junction endodeoxyribonuclease RusA	N/A
eggNOG-mapper	UHGV-0207175_44	411470.RUMGNA_02196	213.0	0	COG COG4570 Holliday junction resolvase	N/A
Pfam	UHGV-0207175_44	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0207175_44	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0207175_44	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-0207175_45	phrog_10469	218.9	0	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0207175_45	UniRef90_S2YJX3	506.0	0	Phage_rep_org_N domain-containing protein	N/A
eggNOG-mapper	UHGV-0207175_45	397288.C806_03002	285.0	0	N-terminal phage replisome organiser (Phage_rep_org_N)	N/A
Pfam	UHGV-0207175_45	PF09681	N/A	N/A	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
NCBIFam	UHGV-0207175_45	TIGR01714.1	N/A	N/A	phage replisome organizer, putative, N-terminal region	N/A
COG	UHGV-0207175_45	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0207175_45	PF09681,TIGR01714,COG3355	N/A	N/A	N/A	N/A
KOfam	UHGV-0207175_46	K02315	178.7	0	dnaC; DNA replication protein DnaC	N/A
PHROG	UHGV-0207175_46	phrog_50	174.8	0	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0207175_46	UniRef90_S2ZLG6	537.0	0	IstB_IS21 domain-containing protein	N/A
eggNOG-mapper	UHGV-0207175_46	476272.RUMHYD_03359	225.0	0	DNA-dependent DNA replication	N/A
Pfam	UHGV-0207175_46	PF01695	N/A	N/A	IstB-like ATP binding protein	IstB_IS21
COG	UHGV-0207175_46	COG1484	N/A	N/A	DNA replication protein DnaC	N/A
structural_annotation	UHGV-0207175_46	PF01695,MF_00377,NF005992,COG1484	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0207175_48	537007.BLAHAN_05460	57.8	0.00000000116	N/A	N/A
PHROG	UHGV-0207175_49	phrog_8684	108.6	4.4e-32	N/A	unknown function
UniRef90	UHGV-0207175_49	UniRef90_A0A396G7S7	113.0	6.37e-29	YopX domain-containing protein	N/A
eggNOG-mapper	UHGV-0207175_49	411470.RUMGNA_02199	98.2	4.27e-24	N/A	N/A
Pfam	UHGV-0207175_49	PF09643	N/A	N/A	YopX protein	YopX
NCBIFam	UHGV-0207175_49	TIGR01671.1	N/A	N/A	phage conserved hypothetical protein TIGR01671	N/A
structural_annotation	UHGV-0207175_49	PF09643,TIGR01671	N/A	N/A	N/A	N/A
PHROG	UHGV-0207175_51	phrog_15198	126.7	4.5e-39	N/A	unknown function
UniRef90	UHGV-0207175_51	UniRef90_F3AXT6	185.0	0	N/A	N/A
eggNOG-mapper	UHGV-0207175_51	665950.HMPREF1025_02540	185.0	0	N/A	N/A
PHROG	UHGV-0207175_53	phrog_6568	78.9	3.8e-23	N/A	unknown function
PHROG	UHGV-0207175_54	phrog_36	68.1	1.6e-19	transcriptional regulator	transcription regulation
eggNOG-mapper	UHGV-0207175_54	742765.HMPREF9457_02116	158.0	0	N/A	N/A
structural_annotation	UHGV-0207175_54	PF02996	N/A	N/A	N/A	N/A