UHGV-0209360 (vOTU-016325)

Viral Genome: UHGV-0209360

Genome Information

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Overview
UHGV ID	UHGV-0209360
vOTU ID	vOTU-016325
Representative Genome?	Yes
Source	CHVD
Original Genome ID	SRS013800_a1_ct17649_vs1@Siphoviridae__sp._ctsHm1
Associated Biosample	N/A
Viral Genome Confidence	Confident

Quality Assessment
CheckV Method	AAI-based
CheckV Completeness	86.18 (Medium-quality)
Trimmed?	No
CheckV Viral Markers	14
CheckV Host Markers	2
Recoded?	No

Viral Content
geNomad score	0.9768
Viral Hallmark Genes (geNomad)	7
Plasmid Hallmark Genes (geNomad)	0
ViralVerify Prediction	Virus
ViralVerify Score	30.75
Jumbo Phage?	No

Genome Content
Length (bps)	48,104
GC Content	48.19%
Genetic Code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS Genes	69
CDS Density	88%
Average CDS Length (bps)	616.09
Total tRNA Genes	1
Suppressor tRNA Genes	0

Genome Content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 86.18)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0209360_2	phrog_873	121.8	4.9e-36	endolysin	head and packaging
UniRef90	UHGV-0209360_2	UniRef90_UPI0018ABA41D	265.0	0	structural protein P5	N/A
eggNOG-mapper	UHGV-0209360_2	411477.PARMER_01682	186.0	0	N/A	N/A
PHROG	UHGV-0209360_4	phrog_15037	49.9	0.000000000000041	N/A	unknown function
UniRef90	UHGV-0209360_4	UniRef90_UPI0015E74944	112.0	8.41e-29	phage holin family protein	N/A
eggNOG-mapper	UHGV-0209360_4	1347393.HG726021_gene389	102.0	1.47e-25	N/A	N/A
structural_annotation	UHGV-0209360_6	PF02185	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0209360_8	PF14545	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0209360_9	742727.HMPREF9447_04856	70.5	0.00000000000000756	N/A	N/A
PHROG	UHGV-0209360_10	phrog_17422	357.3	0	N/A	unknown function
UniRef90	UHGV-0209360_10	UniRef90_UPI00189D96D6	3250.0	0	collagen-like protein	N/A
eggNOG-mapper	UHGV-0209360_10	445970.ALIPUT_01638	1158.0	0	cellulase activity	N/A
COG	UHGV-0209360_10	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0209360_10	PF14594,TIGR01665,COG4379	N/A	N/A	N/A	N/A
KOfam	UHGV-0209360_13	K07741	93.1	6.4e-27	antB; anti-repressor protein	N/A
PHROG	UHGV-0209360_13	phrog_130	225.1	0	anti-repressor Ant	transcription regulation
UniRef90	UHGV-0209360_13	UniRef90_UPI001D082E5A	459.0	0	phage antirepressor KilAC domain-containing protein	N/A
eggNOG-mapper	UHGV-0209360_13	445975.COLSTE_01114	172.0	0	BRO family, N-terminal domain	N/A
Pfam	UHGV-0209360_13	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
Pfam	UHGV-0209360_13	PF03374	N/A	N/A	Phage antirepressor protein KilAC domain	ANT
COG	UHGV-0209360_13	COG3617	N/A	N/A	Prophage antirepressor	N/A
structural_annotation	UHGV-0209360_13	PF02498,PF03374,TIGR02681,COG3617,COG3645	N/A	N/A	N/A	N/A
UniRef90	UHGV-0209360_16	UniRef90_A0A3R6RWM6	139.0	2.19e-36	BIG2 domain-containing protein	N/A
eggNOG-mapper	UHGV-0209360_16	504472.Slin_1680	63.5	0.00000000548	Bacterial Ig-like domain (group 2)	N/A
Pfam	UHGV-0209360_16	PF02368	N/A	N/A	Bacterial Ig-like domain (group 2)	Big_2
COG	UHGV-0209360_16	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0209360_16	PF02368,PF07467,NF005261	N/A	N/A	N/A	N/A
PHROG	UHGV-0209360_18	phrog_3996	117.5	6.5e-35	membrane protein	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0209360_18	UniRef90_UPI00189FA52E	221.0	0	N/A	N/A
eggNOG-mapper	UHGV-0209360_18	926559.JoomaDRAFT_1509	73.9	0.00000000000000857	N/A	N/A
Pfam	UHGV-0209360_18	PF10097	N/A	N/A	N/A	DUF2335
COG	UHGV-0209360_18	COG5346	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0209360_18	PF10097,COG5346	N/A	N/A	N/A	N/A
PHROG	UHGV-0209360_19	phrog_4792	167.2	0	anti-repressor	transcription regulation
UniRef90	UHGV-0209360_19	UniRef90_UPI001C379CBF	345.0	0	ORF6N domain-containing protein	N/A
eggNOG-mapper	UHGV-0209360_19	1235803.C825_03069	243.0	0	ORF6N domain	N/A
Pfam	UHGV-0209360_19	PF10543	N/A	N/A	ORF6N domain	ORF6N
COG	UHGV-0209360_19	COG1502	N/A	N/A	Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthase	N/A
structural_annotation	UHGV-0209360_19	PF10543,TIGR02681,COG3646	N/A	N/A	N/A	N/A
PHROG	UHGV-0209360_21	phrog_6305	81.4	1.2e-23	tail protein	tail
eggNOG-mapper	UHGV-0209360_21	445970.ALIPUT_01641	190.0	0	N/A	N/A
structural_annotation	UHGV-0209360_21	PF11514,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0209360_22	phrog_5377	87.8	1.1e-25	N/A	unknown function
eggNOG-mapper	UHGV-0209360_22	1077285.AGDG01000032_gene4183	74.7	0.00000000000000299	N/A	N/A
KOfam	UHGV-0209360_23	K11498	50.6	0.000000000000015	CENPE; centromeric protein E	N/A
PHROG	UHGV-0209360_23	phrog_14295	252.4	0	N/A	unknown function
UniRef90	UHGV-0209360_23	UniRef90_A0A174HCG8	1285.0	0	ATPase involved in DNA repair	N/A
eggNOG-mapper	UHGV-0209360_23	679935.Alfi_0461	1339.0	0	N/A	N/A
COG	UHGV-0209360_23	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
eggNOG-mapper	UHGV-0209360_24	585543.HMPREF0969_03351	53.5	0.000000548	N/A	N/A
PHROG	UHGV-0209360_26	phrog_14600	213.7	0	N/A	unknown function
eggNOG-mapper	UHGV-0209360_26	445970.ALIPUT_01653	271.0	0	N/A	N/A
structural_annotation	UHGV-0209360_26	PF04630,TIGR01603,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0209360_27	phrog_5597	94.4	8e-28	N/A	unknown function
eggNOG-mapper	UHGV-0209360_27	445970.ALIPUT_01654	192.0	0	N/A	N/A
structural_annotation	UHGV-0209360_27	PF16807,TIGR01633	N/A	N/A	N/A	N/A
PHROG	UHGV-0209360_28	phrog_16482	93.4	1.7e-27	N/A	unknown function
eggNOG-mapper	UHGV-0209360_28	411477.PARMER_02036	102.0	1.27e-26	N/A	N/A
structural_annotation	UHGV-0209360_28	PF20536,TIGR01563,COG5614	N/A	N/A	N/A	N/A
Pfam	UHGV-0209360_29	PF20449	N/A	N/A	N/A	DUF6706
structural_annotation	UHGV-0209360_29	PF20449	N/A	N/A	N/A	N/A
PHROG	UHGV-0209360_30	phrog_29	109.6	3.1e-32	major head protein	head and packaging
UniRef90	UHGV-0209360_30	UniRef90_A0A5B5VID5	657.0	0	Major capsid protein E	N/A
eggNOG-mapper	UHGV-0209360_30	445970.ALIPUT_00704	604.0	0	N/A	N/A
Pfam	UHGV-0209360_30	PF03864	N/A	N/A	Phage major capsid protein E	Phage_cap_E
structural_annotation	UHGV-0209360_30	PF03864,MF_04133,NF041162,COG4834	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0209360_31	1227266.HMPREF1551_00513	55.5	0.000000568	Head fiber protein	N/A
structural_annotation	UHGV-0209360_31	PF21430,NF009633	N/A	N/A	N/A	N/A
PHROG	UHGV-0209360_32	phrog_5824	121.8	5.6e-36	N/A	unknown function
eggNOG-mapper	UHGV-0209360_32	445970.ALIPUT_01659	139.0	2.21e-38	N/A	N/A
PHROG	UHGV-0209360_33	phrog_1365	65.3	8.6e-19	N/A	unknown function
PHROG	UHGV-0209360_34	phrog_64	135.8	2.2e-40	portal protein	head and packaging
UniRef90	UHGV-0209360_34	UniRef90_UPI00189D88D6	862.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0209360_34	445970.ALIPUT_01192	604.0	0	phage portal protein, SPP1	N/A
Pfam	UHGV-0209360_34	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0209360_34	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0209360_35	phrog_38	269.8	0	terminase large subunit	head and packaging
UniRef90	UHGV-0209360_35	UniRef90_A0A5B5VJH5	877.0	0	Phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0209360_35	742767.HMPREF9456_03337	425.0	0	domain protein	N/A
NCBIFam	UHGV-0209360_35	TIGR01630.1	N/A	N/A	phage terminase large subunit	N/A
COG	UHGV-0209360_35	COG5410	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0209360_35	PF17289,PF05876,MF_04147,NF033889,COG5410,COG5362	N/A	N/A	N/A	N/A
KOfam	UHGV-0209360_36	K07474	77.8	2.8e-22	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-0209360_36	phrog_51	90.9	1.6e-26	terminase small subunit	head and packaging
UniRef90	UHGV-0209360_36	UniRef90_UPI0015BC56D4	330.0	0	terminase small subunit	N/A
eggNOG-mapper	UHGV-0209360_36	445970.ALIPUT_01662	250.0	0	COG NOG24226 non supervised orthologous group	N/A
Pfam	UHGV-0209360_36	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-0209360_36	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0209360_36	PF03592,COG3728	N/A	N/A	N/A	N/A
PHROG	UHGV-0209360_37	phrog_5783	240.0	0	N/A	unknown function
UniRef90	UHGV-0209360_37	UniRef90_UPI001E2C6287	258.0	0	NYN domain-containing protein	N/A
eggNOG-mapper	UHGV-0209360_37	702438.HMPREF9431_02012	216.0	0	NYN domain	N/A
Pfam	UHGV-0209360_37	PF01936	N/A	N/A	NYN domain	NYN
COG	UHGV-0209360_37	COG1432	N/A	N/A	NYN domain, predicted PIN-related RNAse, tRNA/rRNA maturation	N/A
Pfam	UHGV-0209360_39	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0209360_39	NF010465,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0209360_44	phrog_5353	63.2	1.8e-18	N/A	unknown function
UniRef90	UHGV-0209360_44	UniRef90_UPI0018736416	175.0	0	acyl-ACP--UDP-N- acetylglucosamine O-acyltransferase	N/A
Pfam	UHGV-0209360_44	PF00132	N/A	N/A	Bacterial transferase hexapeptide (six repeats)	Hexapep
structural_annotation	UHGV-0209360_44	PF21711,MF_01525,NF007797,COG1045	N/A	N/A	N/A	N/A
UniRef90	UHGV-0209360_47	UniRef90_UPI0018A05105	216.0	0	zinc-finger domain-containing protein	N/A
PHROG	UHGV-0209360_50	phrog_155	84.4	1.6e-24	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0209360_50	UniRef90_UPI0016270003	199.0	0	ERF family protein	N/A
eggNOG-mapper	UHGV-0209360_50	1327970.R9ZVT8_9CAUD	184.0	0	ERF superfamily	N/A
Pfam	UHGV-0209360_50	PF04404	N/A	N/A	ERF superfamily	ERF
structural_annotation	UHGV-0209360_50	PF04404,TIGR00607,COG5055	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0209360_52	1121100.JCM6294_521	69.3	0.0000000000000361	N/A	N/A
PHROG	UHGV-0209360_53	phrog_72	54.3	0.0000000000000025	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0209360_53	1127696.HMPREF9134_00465	141.0	2.87995e-41	N/A	N/A
structural_annotation	UHGV-0209360_53	PF05772,NF007281	N/A	N/A	N/A	N/A
PHROG	UHGV-0209360_54	phrog_23776	126.7	9e-38	N/A	unknown function
eggNOG-mapper	UHGV-0209360_54	445970.ALIPUT_01604	211.0	0	N/A	N/A
COG	UHGV-0209360_54	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0209360_54	PF01978,MF_01819,NF041230,COG3355	N/A	N/A	N/A	N/A
PHROG	UHGV-0209360_55	phrog_29547	52.7	0.0000000000000066	N/A	unknown function
eggNOG-mapper	UHGV-0209360_55	619693.HMPREF6745_2494	114.0	8.1e-30	N/A	N/A
Pfam	UHGV-0209360_55	PF20338	N/A	N/A	N/A	DUF6633
structural_annotation	UHGV-0209360_55	PF20338	N/A	N/A	N/A	N/A
PHROG	UHGV-0209360_56	phrog_1770	108.4	6.1e-32	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0209360_56	520709.F985_01897	150.0	5.60519e-45	N/A	N/A
structural_annotation	UHGV-0209360_56	PF02075,MF_00034,NF000711,COG2410	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0209360_59	679190.HMPREF0650_1117	57.8	0.0000000105	N/A	N/A
PHROG	UHGV-0209360_62	phrog_8684	99.3	4.2e-30	N/A	unknown function
UniRef90	UHGV-0209360_62	UniRef90_UPI000A5AC279	113.0	7.14e-30	YopX family protein	N/A
eggNOG-mapper	UHGV-0209360_62	397290.C810_01526	91.3	6.5e-22	YopX protein	N/A
Pfam	UHGV-0209360_62	PF09643	N/A	N/A	YopX protein	YopX
NCBIFam	UHGV-0209360_62	TIGR01671.1	N/A	N/A	phage conserved hypothetical protein TIGR01671	N/A
structural_annotation	UHGV-0209360_62	PF09643,TIGR01671	N/A	N/A	N/A	N/A
PHROG	UHGV-0209360_63	phrog_874	88.7	1.7e-26	N/A	unknown function
eggNOG-mapper	UHGV-0209360_63	563008.HMPREF0665_02420	156.0	1.4013e-45	N/A	N/A
structural_annotation	UHGV-0209360_63	PF04266,MF_00684,NF003443,COG4405	N/A	N/A	N/A	N/A
UniRef90	UHGV-0209360_67	UniRef90_A0A5B5VMX3	177.0	0	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0209360_67	1347393.HG726021_gene520	51.6	0.000000486	Helix-turn-helix domain	N/A
Pfam	UHGV-0209360_67	PF12728	N/A	N/A	Helix-turn-helix domain	HTH_17
COG	UHGV-0209360_67	COG0789	N/A	N/A	DNA-binding transcriptional regulator, MerR family	N/A
PHROG	UHGV-0209360_68	phrog_4	42.6	0.000000000012	transcriptional repressor	transcription regulation
UniRef90	UHGV-0209360_68	UniRef90_R6VD89	332.0	0	Peptidase_S24 domain-containing protein	N/A
eggNOG-mapper	UHGV-0209360_68	679935.Alfi_2522	392.0	0	Transcriptional regulator	N/A
COG	UHGV-0209360_68	COG2932	N/A	N/A	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	N/A
structural_annotation	UHGV-0209360_68	PF00717,PF12844,MF_00015,TIGR00498,COG2932	N/A	N/A	N/A	N/A
KOfam	UHGV-0209360_69	K00793	133.2	2e-39	ribE, RIB5; riboflavin synthase [EC:2.5.1.9]	N/A
UniRef90	UHGV-0209360_69	UniRef90_E4M9L5	198.0	0	Riboflavin synthase, alpha subunit	N/A
eggNOG-mapper	UHGV-0209360_69	1203611.KB894542_gene717	207.0	0	Lumazine binding domain	N/A
Pfam	UHGV-0209360_69	PF00677	N/A	N/A	Lumazine binding domain	Lum_binding
COG	UHGV-0209360_69	COG0307	N/A	N/A	Riboflavin synthase alpha chain	N/A