UHGV-0210880 (vOTU-048689)

Viral Genome: UHGV-0210880

Genome Information

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Overview
UHGV ID	UHGV-0210880
vOTU ID	vOTU-048689
Representative Genome?	Yes
Source	CHVD
Original Genome ID	SAMN11252271_a1_ct4033@circular@Myoviridae__sp._ctqHr033
Associated Biosample	SAMN11252271
Viral Genome Confidence	Confident

Quality Assessment
CheckV Method	DTR
CheckV Completeness	100 (Complete)
Trimmed?	No
CheckV Viral Markers	21
CheckV Host Markers	0
Recoded?	No

Viral Content
geNomad score	0.9796
Viral Hallmark Genes (geNomad)	12
Plasmid Hallmark Genes (geNomad)	0
ViralVerify Prediction	Virus
ViralVerify Score	33.74
Jumbo Phage?	No

Genome Content
Length (bps)	32,935
GC Content	49.56%
Genetic Code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS Genes	53
CDS Density	95%
Average CDS Length (bps)	587.94
Total tRNA Genes	0
Suppressor tRNA Genes	0

Genome Content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
structural_annotation	UHGV-0210880_1	PF18895	N/A	N/A	N/A	N/A
PHROG	UHGV-0210880_3	phrog_3777	80.3	1.4e-23	N/A	unknown function
UniRef90	UHGV-0210880_3	UniRef90_A0A417F883	152.0	5.60519e-45	N/A	N/A
eggNOG-mapper	UHGV-0210880_3	411462.DORLON_00813	67.0	0.00000000000153	N/A	N/A
Pfam	UHGV-0210880_3	PF12957	N/A	N/A	N/A	DUF3846
structural_annotation	UHGV-0210880_3	PF12957	N/A	N/A	N/A	N/A
PHROG	UHGV-0210880_4	phrog_38832	73.1	2.4e-21	N/A	unknown function
eggNOG-mapper	UHGV-0210880_4	665956.HMPREF1032_00143	63.2	0.000000000363	N/A	N/A
structural_annotation	UHGV-0210880_4	PF11717,TIGR02450	N/A	N/A	N/A	N/A
UniRef90	UHGV-0210880_5	UniRef90_A0A8D9PDQ6	144.0	1.06499e-43	Restriction alleviation protein	N/A
Pfam	UHGV-0210880_5	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
structural_annotation	UHGV-0210880_5	TIGR03655	N/A	N/A	N/A	N/A
PHROG	UHGV-0210880_6	phrog_22543	43.6	0.0000000000047	N/A	unknown function
UniRef90	UHGV-0210880_6	UniRef90_A0A8D9PDT5	72.8	0.0000000000000199	Hydrogenase/urease nickel incorporation protein	N/A
PHROG	UHGV-0210880_8	phrog_36	43.5	0.0000000000051	transcriptional regulator	transcription regulation
eggNOG-mapper	UHGV-0210880_8	428125.CLOLEP_01806	79.3	1.04e-16	N/A	N/A
Pfam	UHGV-0210880_8	PF07374	N/A	N/A	N/A	DUF1492
structural_annotation	UHGV-0210880_8	PF07374,TIGR01636	N/A	N/A	N/A	N/A
Pfam	UHGV-0210880_9	PF01402	N/A	N/A	Ribbon-helix-helix protein, copG family	RHH_1
KOfam	UHGV-0210880_11	K07451	50.7	0.000000000000031	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	N/A
PHROG	UHGV-0210880_11	phrog_119	87.3	1.7e-25	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0210880_11	UniRef90_A0A2V2GQ57	157.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0210880_11	1226322.HMPREF1545_00111	121.0	4.26e-35	HNH nucleases	N/A
Pfam	UHGV-0210880_11	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0210880_11	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-0210880_11	TIGR02646	N/A	N/A	N/A	N/A
PHROG	UHGV-0210880_12	phrog_361	69.1	6.9e-20	terminase small subunit	head and packaging
UniRef90	UHGV-0210880_12	UniRef90_A0A1C6H6I9	166.0	0	Phage terminase, small subunit	N/A
Pfam	UHGV-0210880_12	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
COG	UHGV-0210880_12	COG3747	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0210880_12	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-0210880_13	phrog_9	296.8	0	terminase large subunit	head and packaging
UniRef90	UHGV-0210880_13	UniRef90_A0A2V2GQ67	1138.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0210880_13	1226322.HMPREF1545_00113	865.0	0	Phage Terminase	N/A
Pfam	UHGV-0210880_13	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0210880_13	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0210880_13	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0210880_13	PF20441,PF03354,MF_04013,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0210880_14	phrog_12	180.2	0	portal protein	head and packaging
UniRef90	UHGV-0210880_14	UniRef90_A0A2V2GQD5	733.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0210880_14	1226322.HMPREF1545_00114	504.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-0210880_14	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0210880_14	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0210880_14	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0210880_14	PF04860,MF_04120,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-0210880_15	K06904	147.9	7.84727e-44	N/A	N/A
PHROG	UHGV-0210880_15	phrog_80	167.3	0	head maturation protease	head and packaging
UniRef90	UHGV-0210880_15	UniRef90_A0A2V2GNJ3	355.0	0	HK97 family phage prohead protease	N/A
eggNOG-mapper	UHGV-0210880_15	1226322.HMPREF1545_00115	238.0	0	Phage prohead protease, HK97 family	N/A
Pfam	UHGV-0210880_15	PF04586	N/A	N/A	Caudovirus prohead serine protease	Peptidase_S78
NCBIFam	UHGV-0210880_15	TIGR01543.1	N/A	N/A	HK97 family phage prohead protease	N/A
COG	UHGV-0210880_15	COG3740	N/A	N/A	Phage head maturation protease	N/A
structural_annotation	UHGV-0210880_15	PF04586,TIGR01543,COG3740	N/A	N/A	N/A	N/A
PHROG	UHGV-0210880_16	phrog_10	218.9	0	major head protein	head and packaging
UniRef90	UHGV-0210880_16	UniRef90_A0A2V2GRA2	904.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0210880_16	1226322.HMPREF1545_00116	571.0	0	phage major capsid protein, HK97 family	N/A
Pfam	UHGV-0210880_16	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
Pfam	UHGV-0210880_16	PF12733	N/A	N/A	Cadherin-like beta sandwich domain	Cadherin-like
NCBIFam	UHGV-0210880_16	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0210880_16	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0210880_16	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0210880_17	phrog_2550	82.8	2e-24	N/A	unknown function
UniRef90	UHGV-0210880_17	UniRef90_UPI001E35E63D	69.7	0.000000000000117	phage head-tail connector protein	N/A
eggNOG-mapper	UHGV-0210880_17	1226322.HMPREF1545_00117	104.0	4.66e-28	N/A	N/A
structural_annotation	UHGV-0210880_17	PF05135,TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-0210880_18	phrog_1951	91.7	4.4e-27	head-tail adaptor	connector
UniRef90	UHGV-0210880_18	UniRef90_A0A2V2GSS5	167.0	0	Phage head-tail adapter protein	N/A
eggNOG-mapper	UHGV-0210880_18	1226322.HMPREF1545_00118	104.0	1.12e-27	N/A	N/A
NCBIFam	UHGV-0210880_18	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
structural_annotation	UHGV-0210880_18	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
UniRef90	UHGV-0210880_19	UniRef90_UPI00073E355A	163.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0210880_19	1226322.HMPREF1545_00119	92.0	3.17e-22	N/A	N/A
Pfam	UHGV-0210880_19	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-0210880_19	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
UniRef90	UHGV-0210880_20	UniRef90_U2SBX3	100.0	1.5e-25	HTH merR-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0210880_20	1226322.HMPREF1545_00120	100.0	2.52e-26	N/A	N/A
structural_annotation	UHGV-0210880_20	PF20765	N/A	N/A	N/A	N/A
PHROG	UHGV-0210880_21	phrog_88	177.2	0	major tail protein	tail
UniRef90	UHGV-0210880_21	UniRef90_A0A2V2GLL2	345.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-0210880_21	1226322.HMPREF1545_00121	197.0	0	phage major tail protein, phi13 family	N/A
NCBIFam	UHGV-0210880_21	TIGR01603.1	N/A	N/A	major tail protein	N/A
PHROG	UHGV-0210880_22	phrog_709	98.1	5.7e-29	N/A	unknown function
eggNOG-mapper	UHGV-0210880_22	411471.SUBVAR_05858	127.0	2.94e-36	N/A	N/A
structural_annotation	UHGV-0210880_22	PF19591	N/A	N/A	N/A	N/A
PHROG	UHGV-0210880_23	phrog_13339	409.1	0	tail length tape measure protein	tail
UniRef90	UHGV-0210880_23	UniRef90_A0A2V2GLB5	989.0	0	Phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-0210880_23	1033743.CAES01000020_gene3130	324.0	0	Phage-related minor tail protein	N/A
Pfam	UHGV-0210880_23	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-0210880_23	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-0210880_23	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-0210880_23	COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-0210880_24	phrog_13564	76.2	1.99965e-42	minor tail protein	tail
eggNOG-mapper	UHGV-0210880_24	411471.SUBVAR_05861	197.0	0	N/A	N/A
structural_annotation	UHGV-0210880_24	PF16774,PF20753,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0210880_25	phrog_7064	90.1	0	tail protein	tail
eggNOG-mapper	UHGV-0210880_25	665956.HMPREF1032_00106	252.0	0	N/A	N/A
Pfam	UHGV-0210880_25	PF14594	N/A	N/A	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
structural_annotation	UHGV-0210880_25	PF14594,TIGR03361,COG4379	N/A	N/A	N/A	N/A
PHROG	UHGV-0210880_26	phrog_5811	82.9	2.5e-24	N/A	unknown function
eggNOG-mapper	UHGV-0210880_26	665956.HMPREF1032_00105	120.0	3.55e-28	N/A	N/A
PHROG	UHGV-0210880_30	phrog_937	53.0	0.0000000000000057	hemolysin	other
eggNOG-mapper	UHGV-0210880_30	478749.BRYFOR_07561	80.1	3.51e-18	N/A	N/A
eggNOG-mapper	UHGV-0210880_31	1347392.CCEZ01000043_gene405	56.6	0.00000000447	N/A	N/A
KOfam	UHGV-0210880_32	K01448	62.9	4.6e-18	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0210880_32	phrog_435	71.7	1.3e-20	endolysin	lysis
UniRef90	UHGV-0210880_32	UniRef90_A0A2V2GRI9	461.0	0	MurNAc-LAA domain-containing protein	N/A
eggNOG-mapper	UHGV-0210880_32	697281.Mahau_0053	94.4	1.09e-20	n-acetylmuramoyl-l-alanine amidase	N/A
Pfam	UHGV-0210880_32	PF01520	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_3
COG	UHGV-0210880_32	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0210880_32	PF01520,MF_00562,TIGR02883,COG0860	N/A	N/A	N/A	N/A
KOfam	UHGV-0210880_33	K14059	130.8	1.9e-38	int; integrase	N/A
PHROG	UHGV-0210880_33	phrog_1	125.8	4.3e-37	integrase	integration and excision
UniRef90	UHGV-0210880_33	UniRef90_UPI001E298856	525.0	0	site-specific integrase	N/A
eggNOG-mapper	UHGV-0210880_33	748224.HMPREF9436_03382	271.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0210880_33	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0210880_33	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0210880_33	PF00589,PF14659,MF_01808,NF007246,COG4973	N/A	N/A	N/A	N/A
UniRef90	UHGV-0210880_35	UniRef90_UPI001E2EC555	200.0	0	helix-turn-helix domain-containing protein	N/A
Pfam	UHGV-0210880_35	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0210880_35	COG3620	N/A	N/A	Predicted transcriptional regulator, contains an XRE-type HTH domain (archaeal members contain CBS pair)	N/A
structural_annotation	UHGV-0210880_35	PF12844,MF_00535,NF041677,COG1396	N/A	N/A	N/A	N/A
UniRef90	UHGV-0210880_37	UniRef90_A0A8D9PDN2	78.6	6.21e-18	DNA-binding protein	N/A
structural_annotation	UHGV-0210880_37	PF10078,NF040507,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-0210880_41	phrog_4433	372.9	0	N/A	unknown function
eggNOG-mapper	UHGV-0210880_41	767434.Fraau_1460	113.0	1.45e-26	regulation of DNA-templated transcription, elongation	N/A
COG	UHGV-0210880_41	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
structural_annotation	UHGV-0210880_41	NF007410	N/A	N/A	N/A	N/A
PHROG	UHGV-0210880_43	phrog_14970	197.8	0	N/A	unknown function
UniRef90	UHGV-0210880_43	UniRef90_UPI00123F00F5	178.0	0	Rad52/Rad22 family DNA repair protein	N/A
eggNOG-mapper	UHGV-0210880_43	428127.EUBDOL_01248	156.0	2.8026e-45	double-strand break repair protein	N/A
Pfam	UHGV-0210880_43	PF04098	N/A	N/A	Rad52/22 family double-strand break repair protein	Rad52_Rad22
COG	UHGV-0210880_43	COG4712	N/A	N/A	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	N/A
structural_annotation	UHGV-0210880_43	PF04098,TIGR00607,COG4712	N/A	N/A	N/A	N/A
PHROG	UHGV-0210880_44	phrog_1389	65.5	7.3e-19	N/A	unknown function
eggNOG-mapper	UHGV-0210880_44	883156.HMPREF9282_01223	66.2	0.00000000000162	N/A	N/A
structural_annotation	UHGV-0210880_44	PF11056,TIGR04376,COG1842	N/A	N/A	N/A	N/A
PHROG	UHGV-0210880_45	phrog_7566	53.7	0.0000000000000029	N/A	unknown function
eggNOG-mapper	UHGV-0210880_45	693746.OBV_24070	70.1	0.0000000000000483	N/A	N/A
KOfam	UHGV-0210880_46	K03111	128.7	6.9e-38	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0210880_46	phrog_44	132.4	3.1e-39	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0210880_46	UniRef90_UPI001E2A5A6F	230.0	0	single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0210880_46	1235835.C814_01372	122.0	1.03e-33	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-0210880_46	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0210880_46	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0210880_46	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0210880_46	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0210880_46	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0210880_47	phrog_16304	74.5	1.7e-21	N/A	unknown function
UniRef90	UHGV-0210880_47	UniRef90_UPI001E560709	165.0	0	N/A	N/A
eggNOG-mapper	UHGV-0210880_47	290402.Cbei_3733	59.3	0.0000000917	DnaD domain protein	N/A
Pfam	UHGV-0210880_47	PF19808	N/A	N/A	N/A	DUF6291
COG	UHGV-0210880_47	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0210880_47	PF19808	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0210880_48	1235792.C808_01244	153.0	1.79366e-43	N/A	N/A
KOfam	UHGV-0210880_49	K00571	106.2	3.6e-31	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-0210880_49	phrog_67	95.8	7.7e-29	DNA methyltransferase	other
UniRef90	UHGV-0210880_49	UniRef90_A0A1C6E5W1	441.0	0	Methyltransferase	N/A
eggNOG-mapper	UHGV-0210880_49	1449342.JQMR01000001_gene1025	376.0	0	DNA modification methylase DNA replication, recombination, and repair	N/A
PADLOC	UHGV-0210880_49	MTase_II_00157	82.5	7.8e-25	Type II methyltransferase	RM
Pfam	UHGV-0210880_49	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-0210880_49	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-0210880_49	PF01555,MF_01872,NF010253,COG0863	N/A	N/A	N/A	N/A
KOfam	UHGV-0210880_50	K01160	67.8	2.5e-19	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0210880_50	phrog_34	70.9	1.9e-20	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0210880_50	UniRef90_A0A498CNH4	149.0	1.68156e-44	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0210880_50	1226322.HMPREF1545_04070	53.1	0.000000299	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	N/A
COG	UHGV-0210880_50	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0210880_50	PF19595,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-0210880_52	phrog_2308	41.9	0.000000000013	N/A	unknown function
eggNOG-mapper	UHGV-0210880_52	1519439.JPJG01000013_gene206	60.5	0.00000000228	COG1961 Site-specific recombinases, DNA invertase Pin homologs	N/A
Pfam	UHGV-0210880_52	PF13384	N/A	N/A	Homeodomain-like domain	HTH_23
COG	UHGV-0210880_52	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0210880_52	TIGR04381	N/A	N/A	N/A	N/A