UHGV-0213629 (vOTU-049055)

Viral Genome: UHGV-0213629

Genome Information

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Overview
UHGV ID	UHGV-0213629
vOTU ID	vOTU-049055
Representative Genome?	Yes
Source	CHVD
Original Genome ID	SAMN11252294_a1_ct39588@circular@Siphoviridae__sp._ctzFy588
Associated Biosample	SAMN11252294
Viral Genome Confidence	Confident

Quality Assessment
CheckV Method	DTR
CheckV Completeness	100 (Complete)
Trimmed?	No
CheckV Viral Markers	9
CheckV Host Markers	0
Recoded?	No

Viral Content
geNomad score	0.9709
Viral Hallmark Genes (geNomad)	4
Plasmid Hallmark Genes (geNomad)	0
ViralVerify Prediction	Virus
ViralVerify Score	21.53
Jumbo Phage?	No

Genome Content
Length (bps)	33,029
GC Content	45.41%
Genetic Code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS Genes	54
CDS Density	96%
Average CDS Length (bps)	586.22
Total tRNA Genes	0
Suppressor tRNA Genes	0

Genome Content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0213629_4	phrog_2164	65.2	8.4e-19	N/A	unknown function
structural_annotation	UHGV-0213629_6	PF17516,NF007197	N/A	N/A	N/A	N/A
KOfam	UHGV-0213629_8	K00571	158.5	0	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-0213629_8	phrog_498	104.4	1.2e-30	DNA methyltransferase	other
UniRef90	UHGV-0213629_8	UniRef90_UPI001C60CAF9	235.0	0	site-specific DNA-methyltransferase	N/A
eggNOG-mapper	UHGV-0213629_8	469596.HMPREF9488_00879	215.0	0	DNA methylase	N/A
PADLOC	UHGV-0213629_8	MTase_II_00157	152.5	0	Type II methyltransferase	RM
Pfam	UHGV-0213629_8	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-0213629_8	COG2189	N/A	N/A	Adenine specific DNA methylase Mod	N/A
structural_annotation	UHGV-0213629_8	PF01555,MF_01872,NF008572,COG0863	N/A	N/A	N/A	N/A
PHROG	UHGV-0213629_10	phrog_17284	53.3	0.000000000000004	N/A	unknown function
UniRef90	UHGV-0213629_10	UniRef90_A0A843HRS2	73.2	0.000000000000033	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-0213629_10	996306.SSUR61_1005	70.1	0.0000000000021	C-5 cytosine-specific DNA methylase	N/A
PADLOC	UHGV-0213629_10	oMTase_00017	40.8	0.000000000048	orphan methyltransferase	RM
Pfam	UHGV-0213629_10	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
COG	UHGV-0213629_10	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
KOfam	UHGV-0213629_11	K00558	99.6	2.5e-29	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-0213629_11	phrog_116	97.1	1.3e-29	DNA methyltransferase	other
UniRef90	UHGV-0213629_11	UniRef90_A0A371JBS1	301.0	0	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-0213629_11	397290.C810_05213	228.0	0	C-5 cytosine-specific DNA methylase	N/A
PADLOC	UHGV-0213629_11	MTase_II_00174	146.0	4.30199e-43	Type II methyltransferase	RM
Pfam	UHGV-0213629_11	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
NCBIFam	UHGV-0213629_11	TIGR00675.1	N/A	N/A	DNA (cytosine-5-)-methyltransferase	N/A
COG	UHGV-0213629_11	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0213629_11	PF00145,MF_02100,TIGR00675,COG0270	N/A	N/A	N/A	N/A
PHROG	UHGV-0213629_12	phrog_5708	241.4	0	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0213629_12	UniRef90_UPI001D0BCA6A	266.0	0	conserved phage C-terminal domain-containing protein	N/A
eggNOG-mapper	UHGV-0213629_12	278197.PEPE_1019	246.0	0	DnaD domain protein	N/A
Pfam	UHGV-0213629_12	PF09524	N/A	N/A	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
NCBIFam	UHGV-0213629_12	TIGR02220.1	N/A	N/A	phage conserved hypothetical protein, C-terminal domain	N/A
COG	UHGV-0213629_12	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
PHROG	UHGV-0213629_15	phrog_19106	178.8	0	N/A	unknown function
UniRef90	UHGV-0213629_15	UniRef90_A0A173RDE6	174.0	0	Group I intron endonuclease	N/A
eggNOG-mapper	UHGV-0213629_15	658655.HMPREF0988_00875	158.0	0	N/A	N/A
structural_annotation	UHGV-0213629_15	TIGR01453	N/A	N/A	N/A	N/A
KOfam	UHGV-0213629_16	K03111	121.5	1.1e-35	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0213629_16	phrog_44	122.2	4.2e-36	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0213629_16	UniRef90_UPI000C768D7D	113.0	9.24e-30	single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0213629_16	1391647.AVSV01000022_gene2534	109.0	4.52e-29	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-0213629_16	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0213629_16	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0213629_16	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0213629_16	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0213629_16	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0213629_17	phrog_4973	57.0	3.1e-16	N/A	unknown function
UniRef90	UHGV-0213629_17	UniRef90_A0A3R6RL03	62.4	0.0000000000336	DNA-binding protein	N/A
Pfam	UHGV-0213629_17	PF14090	N/A	N/A	Helix-turn-helix domain	HTH_39
structural_annotation	UHGV-0213629_17	PF14090,NF040939,COG4738	N/A	N/A	N/A	N/A
PHROG	UHGV-0213629_18	phrog_72	60.7	2.4e-17	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0213629_18	1410650.JHWL01000003_gene2850	97.1	1.07e-22	N/A	N/A
structural_annotation	UHGV-0213629_18	PF05772,NF007281	N/A	N/A	N/A	N/A
PHROG	UHGV-0213629_19	phrog_6244	85.6	5e-25	N/A	unknown function
eggNOG-mapper	UHGV-0213629_19	585502.HMPREF0645_2602	78.2	0.0000000000000989	N/A	N/A
structural_annotation	UHGV-0213629_19	PF12705,MF_03030,TIGR00372,COG2887	N/A	N/A	N/A	N/A
PHROG	UHGV-0213629_20	phrog_155	144.5	6.19374e-43	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0213629_20	UniRef90_A0A6N7X3H3	187.0	0	Recombinase	N/A
eggNOG-mapper	UHGV-0213629_20	929506.CbC4_1193	186.0	0	ERF superfamily	N/A
Pfam	UHGV-0213629_20	PF04404	N/A	N/A	ERF superfamily	ERF
structural_annotation	UHGV-0213629_20	PF04404,COG4712	N/A	N/A	N/A	N/A
Pfam	UHGV-0213629_21	PF13384	N/A	N/A	Homeodomain-like domain	HTH_23
Pfam	UHGV-0213629_30	PF07963	N/A	N/A	Prokaryotic N-terminal methylation motif	N_methyl
NCBIFam	UHGV-0213629_30	TIGR02532.1	N/A	N/A	prepilin-type N-terminal cleavage/methylation domain-containing protein	N/A
eggNOG-mapper	UHGV-0213629_31	1384065.JAGS01000001_gene2507	77.0	0.00000000000196	domain, Protein	N/A
NCBIFam	UHGV-0213629_31	TIGR02167.1	N/A	N/A	bacterial surface protein 26-residue repeat	N/A
COG	UHGV-0213629_31	COG1876	N/A	N/A	LD-carboxypeptidase LdcB, LAS superfamily	N/A
COG	UHGV-0213629_34	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-0213629_43	PF05065,PF13287,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0213629_45	phrog_581	63.7	8e-19	minor head protein	head and packaging
UniRef90	UHGV-0213629_45	UniRef90_A0A2Z4GUI4	184.0	0	Minor capsid protein 2	N/A
eggNOG-mapper	UHGV-0213629_45	997296.PB1_16234	57.8	0.00000213	Phage minor capsid protein 2	N/A
Pfam	UHGV-0213629_45	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0213629_45	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0213629_45	PF06152,TIGR01641	N/A	N/A	N/A	N/A
PHROG	UHGV-0213629_46	phrog_533	58.6	4.9e-22	portal protein	head and packaging
structural_annotation	UHGV-0213629_46	PF05133,MF_04120,TIGR01542,COG3567	N/A	N/A	N/A	N/A
KOfam	UHGV-0213629_47	K06909	106.6	2.9e-31	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0213629_47	phrog_2	109.1	6.1e-32	terminase large subunit	head and packaging
UniRef90	UHGV-0213629_47	UniRef90_A0A3C1A8K4	252.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0213629_47	476272.RUMHYD_01756	209.0	0	N/A	N/A
Pfam	UHGV-0213629_47	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0213629_47	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0213629_47	PF04466,PF20441,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
KOfam	UHGV-0213629_48	K07474	110.1	3.9e-32	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-0213629_48	phrog_51	103.0	2.4e-31	terminase small subunit	head and packaging
UniRef90	UHGV-0213629_48	UniRef90_UPI0018A91282	94.0	5.98e-22	terminase small subunit	N/A
eggNOG-mapper	UHGV-0213629_48	1260356.D920_01729	93.2	1.67e-22	Terminase small subunit	N/A
Pfam	UHGV-0213629_48	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-0213629_48	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0213629_48	PF03592,COG3728	N/A	N/A	N/A	N/A
PHROG	UHGV-0213629_51	phrog_36	44.0	0.0000000000038	transcriptional regulator	transcription regulation
structural_annotation	UHGV-0213629_51	PF07374,NF008895	N/A	N/A	N/A	N/A