UHGV-0231847 (vOTU-158990)

Viral Genome: UHGV-0231847

Genome Information

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Overview
UHGV ID	UHGV-0231847
vOTU ID	vOTU-158990
Representative Genome?	Yes
Source	mMGE
Original Genome ID	ERR2641220_141_20432_round8-12~4684712
Associated Biosample	SAMEA4731449
Viral Genome Confidence	Confident

Quality Assessment
CheckV Method	HMM-based
CheckV Completeness	70.38 (Medium-quality)
Trimmed?	No
CheckV Viral Markers	23
CheckV Host Markers	0
Recoded?	No

Viral Content
geNomad score	0.9756
Viral Hallmark Genes (geNomad)	8
Plasmid Hallmark Genes (geNomad)	0
ViralVerify Prediction	Virus
ViralVerify Score	51.06
Jumbo Phage?	No

Genome Content
Length (bps)	41,295
GC Content	53.97%
Genetic Code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS Genes	73
CDS Density	93%
Average CDS Length (bps)	524.71
Total tRNA Genes	3
Suppressor tRNA Genes	0

Genome Content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 70.38)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
Pfam	UHGV-0231847_3	PF09693	N/A	N/A	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
structural_annotation	UHGV-0231847_3	PF09693,TIGR01669	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0231847_4	742722.HMPREF9463_00263	82.4	4.39e-19	N/A	N/A
KOfam	UHGV-0231847_5	K00986	94.4	1.5e-27	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	N/A
PHROG	UHGV-0231847_5	phrog_1423	192.4	0	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0231847_5	UniRef90_UPI001EDF62F9	474.0	0	RNA-directed DNA polymerase	N/A
eggNOG-mapper	UHGV-0231847_5	479437.Elen_2643	460.0	0	Reverse transcriptase (RNA-dependent DNA polymerase)	N/A
PADLOC	UHGV-0231847_5	icity0040	82.1	1.2e-23	RT (reverse transcriptase)	CRISPR-CAS
Pfam	UHGV-0231847_5	PF00078	N/A	N/A	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
COG	UHGV-0231847_5	COG3344	N/A	N/A	Retron-type reverse transcriptase	N/A
structural_annotation	UHGV-0231847_5	PF00078,TIGR04416,COG3344	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0231847_6	1235794.C811_01514	108.0	7.29e-28	N/A	N/A
UniRef90	UHGV-0231847_7	UniRef90_R9L5R1	343.0	0	N/A	N/A
eggNOG-mapper	UHGV-0231847_7	1235794.C811_01515	343.0	0	N/A	N/A
Pfam	UHGV-0231847_7	PF19789	N/A	N/A	N/A	DUF6273
eggNOG-mapper	UHGV-0231847_8	1121866.AUGK01000006_gene893	66.6	0.000000000648	N/A	N/A
PHROG	UHGV-0231847_9	phrog_538	164.4	0	minor tail protein	tail
UniRef90	UHGV-0231847_9	UniRef90_A0A0B5BKN7	220.0	0	Phage head fiber protein	N/A
eggNOG-mapper	UHGV-0231847_9	1256908.HMPREF0373_00466	211.0	0	N/A	N/A
Pfam	UHGV-0231847_9	PF14594	N/A	N/A	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
structural_annotation	UHGV-0231847_9	PF14594,TIGR01665,COG4379	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0231847_10	1120979.ATVB01000018_gene1398	60.5	0.0000000623	N/A	N/A
structural_annotation	UHGV-0231847_10	PF16774,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0231847_11	phrog_58	325.8	0	tail length tape measure protein	tail
UniRef90	UHGV-0231847_11	UniRef90_UPI00189C2A96	369.0	0	tape measure protein	N/A
eggNOG-mapper	UHGV-0231847_11	742722.HMPREF9463_00254	368.0	0	nuclear chromosome segregation	N/A
Pfam	UHGV-0231847_11	PF20155	N/A	N/A	Tape measure protein	TMP_3
NCBIFam	UHGV-0231847_11	TIGR02675.1	N/A	N/A	tape measure protein	N/A
COG	UHGV-0231847_11	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-0231847_11	PF20155,MF_04138,TIGR01760,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0231847_12	phrog_7423	57.7	1.7e-16	N/A	unknown function
eggNOG-mapper	UHGV-0231847_12	1347392.CCEZ01000005_gene1243	63.2	0.0000000000479	N/A	N/A
eggNOG-mapper	UHGV-0231847_13	1235792.C808_05346	72.8	0.00000000000000867	N/A	N/A
PHROG	UHGV-0231847_14	phrog_1407	87.4	1.4e-25	major tail protein	tail
UniRef90	UHGV-0231847_14	UniRef90_A0A437UTX5	252.0	0	Phage major tail protein, TP901-1 family	N/A
eggNOG-mapper	UHGV-0231847_14	742722.HMPREF9463_00251	241.0	0	Phage tail tube protein	N/A
Pfam	UHGV-0231847_14	PF06199	N/A	N/A	Phage tail tube protein	Phage_tail_2
NCBIFam	UHGV-0231847_14	TIGR02126.1	N/A	N/A	phage major tail protein, TP901-1 family	N/A
COG	UHGV-0231847_14	COG5437	N/A	N/A	Phage tail protein, TP901-1 family	N/A
structural_annotation	UHGV-0231847_14	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
UniRef90	UHGV-0231847_15	UniRef90_A0A437UU11	195.0	0	N/A	N/A
eggNOG-mapper	UHGV-0231847_15	1235792.C808_05344	127.0	8.84e-36	N/A	N/A
Pfam	UHGV-0231847_15	PF16807	N/A	N/A	N/A	DUF5072
structural_annotation	UHGV-0231847_15	PF16807,COG5003	N/A	N/A	N/A	N/A
PHROG	UHGV-0231847_16	phrog_5	47.4	0.00000000000052	tail completion or Neck1 protein	connector
UniRef90	UHGV-0231847_16	UniRef90_A0A437UU44	179.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0231847_16	742722.HMPREF9463_00249	171.0	0	N/A	N/A
structural_annotation	UHGV-0231847_16	PF17395,TIGR01725,COG5005	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0231847_17	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0231847_18	phrog_132	47.2	0.00000000000036	head-tail adaptor	connector
UniRef90	UHGV-0231847_18	UniRef90_A0A1I5G9Z5	77.4	3.64e-16	Phage gp6-like head-tail connector protein	N/A
eggNOG-mapper	UHGV-0231847_18	742722.HMPREF9463_00247	122.0	1.39e-34	N/A	N/A
Pfam	UHGV-0231847_18	PF05135	N/A	N/A	Phage gp6-like head-tail connector protein	Phage_connect_1
structural_annotation	UHGV-0231847_18	PF05135	N/A	N/A	N/A	N/A
PHROG	UHGV-0231847_19	phrog_29	171.8	0	major head protein	head and packaging
UniRef90	UHGV-0231847_19	UniRef90_UPI000931CAC7	438.0	0	major capsid protein	N/A
eggNOG-mapper	UHGV-0231847_19	742722.HMPREF9463_00246	413.0	0	Phage major capsid protein E	N/A
Pfam	UHGV-0231847_19	PF03864	N/A	N/A	Phage major capsid protein E	Phage_cap_E
structural_annotation	UHGV-0231847_19	PF03864,MF_04133,NF041162,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0231847_20	phrog_909	51.8	0.000000000000014	major head protein	head and packaging
structural_annotation	UHGV-0231847_20	PF02924	N/A	N/A	N/A	N/A
PHROG	UHGV-0231847_21	phrog_172	102.0	6.6e-30	head scaffolding protein	head and packaging
UniRef90	UHGV-0231847_21	UniRef90_A0A437UU03	161.0	0	N/A	N/A
eggNOG-mapper	UHGV-0231847_21	742722.HMPREF9463_00244	146.0	5.87004e-41	N/A	N/A
Pfam	UHGV-0231847_21	PF14265	N/A	N/A	N/A	DUF4355
structural_annotation	UHGV-0231847_21	PF14265	N/A	N/A	N/A	N/A
PHROG	UHGV-0231847_22	phrog_882	50.7	0.000000000000034	N/A	unknown function
COG	UHGV-0231847_24	COG0526	N/A	N/A	Thiol-disulfide isomerase or thioredoxin	N/A
PHROG	UHGV-0231847_25	phrog_115	205.9	0	minor head protein	head and packaging
UniRef90	UHGV-0231847_25	UniRef90_A0A437UU02	434.0	0	Phage_Mu_F domain-containing protein	N/A
eggNOG-mapper	UHGV-0231847_25	742722.HMPREF9463_00241	428.0	0	domain, Protein	N/A
Pfam	UHGV-0231847_25	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
NCBIFam	UHGV-0231847_25	TIGR01641.1	N/A	N/A	minor capsid protein	N/A
COG	UHGV-0231847_25	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0231847_25	PF04233,TIGR01641,COG2369	N/A	N/A	N/A	N/A
UniRef90	UHGV-0231847_26	UniRef90_UPI000931FACD	62.4	0.00000000103	Rho termination factor N-terminal domain-containing protein	N/A
Pfam	UHGV-0231847_26	PF08239	N/A	N/A	Bacterial SH3 domain	SH3_3
PHROG	UHGV-0231847_27	phrog_64	380.7	0	portal protein	head and packaging
UniRef90	UHGV-0231847_27	UniRef90_A0A437UTT5	639.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0231847_27	742722.HMPREF9463_00239	580.0	0	Phage portal protein, SPP1 family	N/A
Pfam	UHGV-0231847_27	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
NCBIFam	UHGV-0231847_27	TIGR01538.1	N/A	N/A	phage portal protein	N/A
structural_annotation	UHGV-0231847_27	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0231847_28	phrog_38	151.5	2.8026e-45	terminase large subunit	head and packaging
UniRef90	UHGV-0231847_28	UniRef90_R9QM30	419.0	0	Terminase large subunit	N/A
eggNOG-mapper	UHGV-0231847_28	742722.HMPREF9463_00238	620.0	0	N/A	N/A
structural_annotation	UHGV-0231847_28	PF17289,PF05876,MF_04147,NF033889,COG5323	N/A	N/A	N/A	N/A
PHROG	UHGV-0231847_29	phrog_2412	47.4	0.0000000000003	N/A	unknown function
eggNOG-mapper	UHGV-0231847_29	1203554.HMPREF1476_00247	58.9	0.00000000239	N/A	N/A
PHROG	UHGV-0231847_32	phrog_4068	79.7	4e-23	N/A	unknown function
UniRef90	UHGV-0231847_32	UniRef90_A0A223DQF8	67.8	0.000000000000244	Sporulation integral membrane protein YtvI	N/A
eggNOG-mapper	UHGV-0231847_32	178901.AmDm5_1358	60.8	0.0000000000321	N/A	N/A
structural_annotation	UHGV-0231847_32	PF06657	N/A	N/A	N/A	N/A
PHROG	UHGV-0231847_36	phrog_2302	110.6	1e-32	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0231847_36	UniRef90_A0A0B5BQ11	284.0	0	Phosphoadenosine phosphosulfate reductase	N/A
eggNOG-mapper	UHGV-0231847_36	742722.HMPREF9463_00233	259.0	0	sulfate reduction	N/A
COG	UHGV-0231847_36	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-0231847_36	PF01507,MF_00063,TIGR02057,COG0175	N/A	N/A	N/A	N/A
UniRef90	UHGV-0231847_39	UniRef90_A0A437UTV1	64.3	0.00000000000629	XRE family transcriptional regulator	N/A
Pfam	UHGV-0231847_39	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0231847_39	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0231847_40	457424.BFAG_01603	88.2	3.75e-21	N/A	N/A
PHROG	UHGV-0231847_41	phrog_15863	157.6	0	N/A	unknown function
UniRef90	UHGV-0231847_41	UniRef90_G4KRA6	165.0	0	J domain-containing protein	N/A
eggNOG-mapper	UHGV-0231847_41	471855.Shel_20200	175.0	0	Heat shock protein DnaJ domain protein	N/A
COG	UHGV-0231847_41	COG2214	N/A	N/A	Curved DNA-binding protein CbpA, contains a DnaJ-like domain	N/A
PHROG	UHGV-0231847_42	phrog_421	98.4	6.9e-29	N/A	unknown function
UniRef90	UHGV-0231847_42	UniRef90_A0A3F3PBV7	142.0	9.03e-38	N/A	N/A
eggNOG-mapper	UHGV-0231847_42	742722.HMPREF9463_00227	122.0	3.03e-31	N/A	N/A
Pfam	UHGV-0231847_42	PF10979	N/A	N/A	N/A	DUF2786
eggNOG-mapper	UHGV-0231847_45	397291.C804_01048	87.0	2.58e-18	N/A	N/A
PHROG	UHGV-0231847_47	phrog_14517	55.3	1.5e-16	N/A	unknown function
eggNOG-mapper	UHGV-0231847_47	1304878.AUGD01000002_gene1862	64.3	0.00000000276	N/A	N/A
eggNOG-mapper	UHGV-0231847_50	1121866.AUGK01000006_gene869	114.0	6.58e-31	N/A	N/A
UniRef90	UHGV-0231847_54	UniRef90_A0A437UTS5	103.0	1.99e-25	N/A	N/A
KOfam	UHGV-0231847_55	K01160	47.3	0.00000000000057	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0231847_55	phrog_140	61.8	1.6e-17	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0231847_55	UniRef90_A0A7X6X595	77.0	0.00000000000000156	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0231847_55	1504822.CCNO01000013_gene309	70.1	0.000000000000173	crossover junction endodeoxyribonuclease activity	N/A
Pfam	UHGV-0231847_55	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0231847_55	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0231847_55	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0231847_56	469378.Ccur_02900	53.9	0.000000349	N/A	N/A
KOfam	UHGV-0231847_58	K02315	129.8	2.8e-38	dnaC; DNA replication protein DnaC	N/A
PHROG	UHGV-0231847_58	phrog_50	115.7	3.6e-34	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0231847_58	UniRef90_A0A5K1IKG1	147.0	5.55e-40	ATP-binding protein	N/A
eggNOG-mapper	UHGV-0231847_58	293826.Amet_2601	112.0	2.59e-27	DNA replication protein	N/A
Pfam	UHGV-0231847_58	PF01695	N/A	N/A	IstB-like ATP binding protein	IstB_IS21
COG	UHGV-0231847_58	COG1484	N/A	N/A	DNA replication protein DnaC	N/A
structural_annotation	UHGV-0231847_58	PF01695,MF_01919,NF005992,COG1484	N/A	N/A	N/A	N/A
PHROG	UHGV-0231847_59	phrog_1163	137.6	8.99998e-41	N/A	unknown function
UniRef90	UHGV-0231847_59	UniRef90_A0A1Y4K1S5	85.1	1.8e-16	Phg_2220_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0231847_59	12348.Q8SDH3_BPLLH	102.0	3.15e-23	calcium ion binding	N/A
Pfam	UHGV-0231847_59	PF19808	N/A	N/A	N/A	DUF6291
Pfam	UHGV-0231847_59	PF09524	N/A	N/A	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
NCBIFam	UHGV-0231847_59	TIGR02220.1	N/A	N/A	phage conserved hypothetical protein, C-terminal domain	N/A
structural_annotation	UHGV-0231847_59	PF09524,PF19808,TIGR02220	N/A	N/A	N/A	N/A
KOfam	UHGV-0231847_60	K03111	130.4	2.3e-38	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0231847_60	phrog_44	112.2	6.6e-35	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0231847_60	UniRef90_UPI0013EAB2B6	174.0	0	single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0231847_60	1235794.C811_01944	171.0	0	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-0231847_60	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0231847_60	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0231847_60	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0231847_60	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0231847_60	PF00436,MF_00984,NF006445,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0231847_62	phrog_155	91.2	1.4e-26	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0231847_62	UniRef90_U2TTW5	167.0	0	Erf family protein	N/A
eggNOG-mapper	UHGV-0231847_62	929506.CbC4_1193	113.0	1.03e-28	ERF superfamily	N/A
Pfam	UHGV-0231847_62	PF04404	N/A	N/A	ERF superfamily	ERF
structural_annotation	UHGV-0231847_62	PF04404,TIGR00607,COG4712	N/A	N/A	N/A	N/A
PHROG	UHGV-0231847_63	phrog_674	86.2	3.6e-25	N/A	unknown function
UniRef90	UHGV-0231847_63	UniRef90_A0A7K3XWT6	210.0	0	N/A	N/A
eggNOG-mapper	UHGV-0231847_63	479437.Elen_2601	170.0	0	N/A	N/A
Pfam	UHGV-0231847_63	PF07083	N/A	N/A	N/A	DUF1351
UniRef90	UHGV-0231847_68	UniRef90_A0A3C1D9A3	63.9	0.00000000000395	HTH cro/C1-type domain-containing protein	N/A
COG	UHGV-0231847_68	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
KOfam	UHGV-0231847_69	K01356	66.5	5.8e-19	lexA; repressor LexA [EC:3.4.21.88]	N/A
PHROG	UHGV-0231847_69	phrog_4	69.1	8.6e-20	transcriptional repressor	transcription regulation
UniRef90	UHGV-0231847_69	UniRef90_A0A3N0AHC7	192.0	0	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0231847_69	521095.Apar_0551	95.1	3.08e-21	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	N/A
Pfam	UHGV-0231847_69	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
Pfam	UHGV-0231847_69	PF00717	N/A	N/A	Peptidase S24-like	Peptidase_S24
COG	UHGV-0231847_69	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-0231847_69	PF00717,PF01381,MF_00015,TIGR00498,COG2932	N/A	N/A	N/A	N/A
PHROG	UHGV-0231847_70	phrog_17572	48.3	0.00000000000016	N/A	unknown function
eggNOG-mapper	UHGV-0231847_70	1232436.CAPF01000040_gene393	53.5	0.0000000327	N/A	N/A
AcrCatalog	UHGV-0231847_70	cluster_25152	47.8	0.000000000277	NA	N/A
structural_annotation	UHGV-0231847_70	PF13783,MF_01122	N/A	N/A	N/A	N/A
KOfam	UHGV-0231847_73	K06400	249.5	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0231847_73	phrog_95	258.7	0	integrase	integration and excision
UniRef90	UHGV-0231847_73	UniRef90_UPI000B1DE676	573.0	0	recombinase family protein	N/A
eggNOG-mapper	UHGV-0231847_73	1337877.R9W007_9CAUD	230.0	0	recombinase activity	N/A
Pfam	UHGV-0231847_73	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0231847_73	PF07508	N/A	N/A	Recombinase	Recombinase
structural_annotation	UHGV-0231847_73	PF07508,PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A