UHGV-0286479 (vOTU-085771)

Viral Genome: UHGV-0286479

Genome Information

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Overview
UHGV ID	UHGV-0286479
vOTU ID	vOTU-085771
Representative Genome?	Yes
Source	mMGE
Original Genome ID	SRR11236258_141_295020_round1256~2482945
Associated Biosample	SAMN05710175
Viral Genome Confidence	Confident

Quality Assessment
CheckV Method	AAI-based
CheckV Completeness	99.9 (High-quality)
Trimmed?	No
CheckV Viral Markers	11
CheckV Host Markers	0
Recoded?	No

Viral Content
geNomad score	0.978
Viral Hallmark Genes (geNomad)	5
Plasmid Hallmark Genes (geNomad)	0
ViralVerify Prediction	Uncertain - viral or bacterial
ViralVerify Score	-5.91
Jumbo Phage?	No

Genome Content
Length (bps)	39,728
GC Content	52.61%
Genetic Code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS Genes	59
CDS Density	90%
Average CDS Length (bps)	604.17
Total tRNA Genes	0
Suppressor tRNA Genes	0

Genome Content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-0286479_1	UniRef90_A0A3C1K3F5	65.5	0.0000000000227	HTH cro/C1-type domain-containing protein	N/A
COG	UHGV-0286479_1	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0286479_1	NF007257,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0286479_5	phrog_4652	108.1	4.1e-32	N/A	unknown function
eggNOG-mapper	UHGV-0286479_5	397290.C810_01459	241.0	0	N/A	N/A
structural_annotation	UHGV-0286479_5	TIGR02582	N/A	N/A	N/A	N/A
PHROG	UHGV-0286479_6	phrog_15946	70.2	2.3e-20	N/A	unknown function
eggNOG-mapper	UHGV-0286479_6	1041147.AUFB01000014_gene330	84.3	1.72e-18	N/A	N/A
KOfam	UHGV-0286479_7	K22300	53.5	0.0000000000000062	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0286479_7	phrog_8	45.1	0.0000000000021	transcriptional regulator	transcription regulation
UniRef90	UHGV-0286479_7	UniRef90_A0A1S2GHY7	54.3	0.0000000499	Transcriptional regulator	N/A
eggNOG-mapper	UHGV-0286479_7	1118060.CAGZ01000012_gene16	51.6	0.000000496	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0286479_7	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0286479_7	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
Pfam	UHGV-0286479_8	PF00325	N/A	N/A	Bacterial regulatory proteins, crp family	Crp
structural_annotation	UHGV-0286479_8	PF21291,TIGR03070,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-0286479_13	phrog_298	83.2	9.4e-25	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0286479_13	UniRef90_A0A1C5T0L2	91.3	2.77e-19	PD-(D/E)XK nuclease superfamily	N/A
eggNOG-mapper	UHGV-0286479_13	1218075.BAYA01000003_gene606	77.0	0.0000000000000102	N/A	N/A
structural_annotation	UHGV-0286479_13	PF12705,MF_03030,TIGR00372,COG2887	N/A	N/A	N/A	N/A
PHROG	UHGV-0286479_15	phrog_561	127.8	2.9e-38	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0286479_15	UniRef90_A0A174RC35	228.0	0	RecT family	N/A
eggNOG-mapper	UHGV-0286479_15	648757.Rvan_1470	156.0	4.90454e-44	N/A	N/A
Pfam	UHGV-0286479_15	PF03837	N/A	N/A	RecT family	RecT
structural_annotation	UHGV-0286479_15	PF03837,TIGR01913	N/A	N/A	N/A	N/A
PHROG	UHGV-0286479_17	phrog_2562	123.1	3.2e-36	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0286479_17	UniRef90_UPI00189A2195	195.0	0	N/A	N/A
eggNOG-mapper	UHGV-0286479_17	1235790.C805_00030	178.0	0	N/A	N/A
Pfam	UHGV-0286479_17	PF14297	N/A	N/A	Lin1244/Lin1753-like, N-terminal	Lin1244_N
COG	UHGV-0286479_17	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
PHROG	UHGV-0286479_18	phrog_1770	102.9	3.4e-30	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0286479_18	UniRef90_A0A1L8CM45	103.0	1.28e-25	Crossover junction endodeoxyribonuclease RuvC	N/A
eggNOG-mapper	UHGV-0286479_18	994601.G9BW80_9CAUD	99.4	1.65e-24	nucleic acid binding	N/A
structural_annotation	UHGV-0286479_18	PF16921,MF_00034,NF000711,COG0817	N/A	N/A	N/A	N/A
dbAPIS	UHGV-0286479_19	APIS008	N/A	N/A	Alphafold2 predicted that Gad2 is an enzyme with a nucleotidyltransferase protein domain, suggesting that it inhibits Gabija via a mechanism of action different than Gad1.	N/A
PHROG	UHGV-0286479_20	phrog_1008	56.8	3e-18	DNA methyltransferase	other
UniRef90	UHGV-0286479_20	UniRef90_A0A345KQM6	95.1	4.65e-20	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-0286479_20	1589750.A0A0C5AEL6_9CAUD	94.4	1.52e-20	N/A	N/A
PHROG	UHGV-0286479_21	phrog_799	49.7	0.000000000000046	DNA methyltransferase	other
UniRef90	UHGV-0286479_21	UniRef90_A0A4U8T4F4	94.4	4.77e-21	Sugar-phosphate nucleotidyltransferase	N/A
eggNOG-mapper	UHGV-0286479_21	537971.HCCG_00428	90.1	2.07e-20	N/A	N/A
structural_annotation	UHGV-0286479_21	PF05869,MF_00607,NF000468,COG0030	N/A	N/A	N/A	N/A
PHROG	UHGV-0286479_24	phrog_3136	124.4	3e-37	N/A	unknown function
UniRef90	UHGV-0286479_24	UniRef90_A0A6N7TMC2	125.0	6.34e-33	ASCH domain-containing protein	N/A
Pfam	UHGV-0286479_24	PF04266	N/A	N/A	ASCH domain	ASCH
COG	UHGV-0286479_24	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
structural_annotation	UHGV-0286479_24	PF08819,MF_00684,NF008917,COG4933	N/A	N/A	N/A	N/A
KOfam	UHGV-0286479_27	K03091	88.6	1.1e-25	sigH; RNA polymerase sporulation-specific sigma factor	N/A
UniRef90	UHGV-0286479_27	UniRef90_A0A316LD95	60.8	0.0000000164	Sigma70_r2 domain-containing protein	N/A
eggNOG-mapper	UHGV-0286479_27	500633.CLOHIR_01562	52.4	0.00000665	Belongs to the sigma-70 factor family	N/A
Pfam	UHGV-0286479_27	PF04542	N/A	N/A	Sigma-70 region 2	Sigma70_r2
Pfam	UHGV-0286479_27	PF13936	N/A	N/A	Helix-turn-helix domain	HTH_38
NCBIFam	UHGV-0286479_27	TIGR02937.1	N/A	N/A	sigma-70 family RNA polymerase sigma factor	N/A
COG	UHGV-0286479_27	COG1595	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	N/A
structural_annotation	UHGV-0286479_27	PF00196,MF_00959,NF006158,COG1191	N/A	N/A	N/A	N/A
KOfam	UHGV-0286479_28	K01520	166.7	0	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	N/A
PHROG	UHGV-0286479_28	phrog_135	132.7	2e-39	dUTPase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0286479_28	UniRef90_UPI001873736C	194.0	0	dUTP diphosphatase	N/A
eggNOG-mapper	UHGV-0286479_28	1282887.AUJG01000016_gene1113	157.0	0	N/A	N/A
Pfam	UHGV-0286479_28	PF00692	N/A	N/A	dUTPase	dUTPase
NCBIFam	UHGV-0286479_28	TIGR00576.1	N/A	N/A	dUTP diphosphatase	N/A
COG	UHGV-0286479_28	COG0756	N/A	N/A	dUTP pyrophosphatase (dUTPase)	N/A
structural_annotation	UHGV-0286479_28	PF00692,MF_00116,TIGR00576,COG0756	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0286479_29	1121405.dsmv_2591	58.9	0.0000000112	N/A	N/A
Pfam	UHGV-0286479_31	PF01402	N/A	N/A	Ribbon-helix-helix protein, copG family	RHH_1
UniRef90	UHGV-0286479_32	UniRef90_A0A810QFN4	470.0	0	LPD3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0286479_32	693746.OBV_01590	344.0	0	N/A	N/A
Pfam	UHGV-0286479_32	PF18798	N/A	N/A	Large polyvalent protein-associated domain 3	LPD3
eggNOG-mapper	UHGV-0286479_33	693746.OBV_01600	70.9	0.000000000123	N/A	N/A
PHROG	UHGV-0286479_34	phrog_20388	89.0	5.5e-26	endolysin	lysis
UniRef90	UHGV-0286479_34	UniRef90_UPI00189D4A1D	99.4	1.63e-21	phage tail tip lysozyme	N/A
eggNOG-mapper	UHGV-0286479_34	1203606.HMPREF1526_00253	107.0	4.87e-24	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-0286479_34	PF18013	N/A	N/A	Phage tail lysozyme	Phage_lysozyme2
Pfam	UHGV-0286479_34	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-0286479_34	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0286479_34	PF18013,PF01471,COG3409	N/A	N/A	N/A	N/A
KOfam	UHGV-0286479_35	K18454	40.5	0.000000000029	deaA; chitin disaccharide deacetylase [EC:3.5.1.105]	N/A
PHROG	UHGV-0286479_35	phrog_30034	112.8	4e-33	N/A	unknown function
UniRef90	UHGV-0286479_35	UniRef90_A0A2Y9CAD1	154.0	0	Carbohydrate binding domain-containing protein	N/A
eggNOG-mapper	UHGV-0286479_35	411460.RUMTOR_02099	127.0	1.02e-34	N/A	N/A
Pfam	UHGV-0286479_35	PF02839	N/A	N/A	Carbohydrate-binding module family 5/12	CBM_5_12
structural_annotation	UHGV-0286479_35	PF14600	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0286479_38	PF21253,PF07210,NF038128,TIGR03000,COG2512	N/A	N/A	N/A	N/A
PHROG	UHGV-0286479_39	phrog_13518	61.3	7.4e-18	N/A	unknown function
eggNOG-mapper	UHGV-0286479_39	1408422.JHYF01000026_gene3527	86.3	8.17e-18	nuclear chromosome segregation	N/A
COG	UHGV-0286479_39	COG5301	N/A	N/A	Phage-related tail fiber protein	N/A
PHROG	UHGV-0286479_40	phrog_5107	40.0	0.000000000032	amidase	lysis
UniRef90	UHGV-0286479_40	UniRef90_A0A4D7ASB8	506.0	0	N/A	N/A
eggNOG-mapper	UHGV-0286479_40	1519439.JPJG01000011_gene54	517.0	0	N/A	N/A
structural_annotation	UHGV-0286479_40	PF11134,MF_03027,NF010237,TIGR03511,COG2319	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0286479_41	PF16677	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0286479_42	1519439.JPJG01000011_gene57	124.0	1.8e-34	N/A	N/A
structural_annotation	UHGV-0286479_42	PF11650	N/A	N/A	N/A	N/A
PHROG	UHGV-0286479_43	phrog_1129	62.5	5.4e-18	holin	lysis
UniRef90	UHGV-0286479_43	UniRef90_A0A0D8J2M2	118.0	6.65e-33	Enolase	N/A
eggNOG-mapper	UHGV-0286479_43	665956.HMPREF1032_03272	116.0	6.26e-33	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-0286479_43	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0286479_43	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-0286479_44	phrog_1863	66.8	1.8e-19	N/A	unknown function
eggNOG-mapper	UHGV-0286479_44	748224.HMPREF9436_00408	95.5	5.03e-25	N/A	N/A
PHROG	UHGV-0286479_45	phrog_422	123.3	2e-36	major head protein	head and packaging
UniRef90	UHGV-0286479_45	UniRef90_A0A8J6JH37	292.0	0	Chitobiase/beta-hexosaminidase C-terminal domain-containing protein	N/A
eggNOG-mapper	UHGV-0286479_45	693746.OBV_01700	212.0	0	N/A	N/A
Pfam	UHGV-0286479_45	PF13290	N/A	N/A	Chitobiase/beta-hexosaminidase C-terminal domain	CHB_HEX_C_1
structural_annotation	UHGV-0286479_45	PF19821,PF13287,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0286479_47	phrog_156	94.6	7.9e-29	portal protein	head and packaging
eggNOG-mapper	UHGV-0286479_47	693746.OBV_01670	536.0	0	N/A	N/A
structural_annotation	UHGV-0286479_47	PF16510,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0286479_49	K06909	121.2	1.1e-35	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0286479_49	phrog_979	142.6	2.10195e-43	terminase large subunit	head and packaging
UniRef90	UHGV-0286479_49	UniRef90_A0A1M5YHQ5	491.0	0	Phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0286479_49	693746.OBV_01690	457.0	0	phage Terminase large subunit	N/A
Pfam	UHGV-0286479_49	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
COG	UHGV-0286479_49	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0286479_49	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0286479_50	1235802.C823_02864	56.6	0.000000000195	N/A	N/A
structural_annotation	UHGV-0286479_51	PF03869,NF010256	N/A	N/A	N/A	N/A
PHROG	UHGV-0286479_52	phrog_15863	152.8	1.4013e-45	N/A	unknown function
UniRef90	UHGV-0286479_52	UniRef90_A0A1Y3R3M0	230.0	0	J domain-containing protein	N/A
eggNOG-mapper	UHGV-0286479_52	693746.OBV_01780	174.0	0	DnaJ molecular chaperone homology domain	N/A
COG	UHGV-0286479_52	COG2214	N/A	N/A	Curved DNA-binding protein CbpA, contains a DnaJ-like domain	N/A
structural_annotation	UHGV-0286479_55	PF17917	N/A	N/A	N/A	N/A
UniRef90	UHGV-0286479_58	UniRef90_A0A7M1RTM1	73.6	0.000000000000388	RNA polymerase sigma factor/ubiquitin-like protein	N/A
eggNOG-mapper	UHGV-0286479_58	1408437.JNJN01000043_gene801	69.7	0.00000000000188	N/A	N/A
KOfam	UHGV-0286479_59	K14059	95.3	1e-27	int; integrase	N/A
PHROG	UHGV-0286479_59	phrog_1	93.4	3.5e-27	integrase	integration and excision
UniRef90	UHGV-0286479_59	UniRef90_R6RH38	224.0	0	Prophage LambdaCh01 site-specific recombinase phage integrase family	N/A
eggNOG-mapper	UHGV-0286479_59	411468.CLOSCI_00325	201.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0286479_59	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0286479_59	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0286479_59	PF00589,PF12167,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A