UHGV-0312626 (vOTU-031998)

Viral Genome: UHGV-0312626

Genome Information

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Overview
UHGV ID	UHGV-0312626
vOTU ID	vOTU-031998
Representative Genome?	Yes
Source	mMGE
Original Genome ID	SRR1915875_119_5417_round1256~1931952
Associated Biosample	SAMN03398792
Viral Genome Confidence	Confident

Quality Assessment
CheckV Method	AAI-based
CheckV Completeness	64.66 (Medium-quality)
Trimmed?	No
CheckV Viral Markers	21
CheckV Host Markers	0
Recoded?	No

Viral Content
geNomad score	0.9785
Viral Hallmark Genes (geNomad)	7
Plasmid Hallmark Genes (geNomad)	0
ViralVerify Prediction	Virus
ViralVerify Score	58.39
Jumbo Phage?	No

Genome Content
Length (bps)	26,661
GC Content	36.37%
Genetic Code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS Genes	51
CDS Density	93%
Average CDS Length (bps)	485.18
Total tRNA Genes	0
Suppressor tRNA Genes	0

Genome Content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 64.66)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0312626_1	K14059	217.6	0	int; integrase	N/A
PHROG	UHGV-0312626_1	phrog_1	199.9	0	integrase	integration and excision
UniRef90	UHGV-0312626_1	UniRef90_UPI001D0692F2	677.0	0	site-specific integrase	N/A
eggNOG-mapper	UHGV-0312626_1	1232428.CAVO010000003_gene1025	268.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0312626_1	PF14657	N/A	N/A	Arm DNA-binding domain	Arm-DNA-bind_4
Pfam	UHGV-0312626_1	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-0312626_1	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0312626_1	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0312626_1	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-0312626_2	phrog_20936	111.5	3.6e-33	N/A	unknown function
UniRef90	UHGV-0312626_2	UniRef90_UPI001D078346	163.0	0	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-0312626_2	861450.HMPREF0080_02020	57.0	0.0000000014	N/A	N/A
Pfam	UHGV-0312626_2	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
structural_annotation	UHGV-0312626_2	PF06114	N/A	N/A	N/A	N/A
KOfam	UHGV-0312626_5	K07729	59.4	7.9e-17	K07729; putative transcriptional regulator	N/A
PHROG	UHGV-0312626_5	phrog_8	78.5	1.2e-22	transcriptional regulator	transcription regulation
UniRef90	UHGV-0312626_5	UniRef90_UPI001D06F06D	214.0	0	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0312626_5	1111454.HMPREF1250_1028	108.0	4.16e-29	carbohydrate binding	N/A
PADLOC	UHGV-0312626_5	retron_type_VI_hth_cluster2_1	47.7	0.0000000000003	N/A	Retron
Pfam	UHGV-0312626_5	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0312626_5	COG2390	N/A	N/A	DNA-binding transcriptional regulator LsrR, DeoR family	N/A
structural_annotation	UHGV-0312626_5	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0312626_6	K07729	54.5	0.0000000000000028	K07729; putative transcriptional regulator	N/A
PHROG	UHGV-0312626_6	phrog_8	46.0	0.0000000000012	transcriptional regulator	transcription regulation
UniRef90	UHGV-0312626_6	UniRef90_UPI001CB0AC39	122.0	4.68e-35	helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-0312626_6	650150.ERH_0585	67.4	0.0000000000000356	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0312626_6	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0312626_6	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0312626_7	K07741	146.5	4.1058e-43	antB; anti-repressor protein	N/A
PHROG	UHGV-0312626_7	phrog_130	264.4	0	anti-repressor Ant	transcription regulation
UniRef90	UHGV-0312626_7	UniRef90_UPI000751A705	431.0	0	phage antirepressor KilAC domain-containing protein	N/A
eggNOG-mapper	UHGV-0312626_7	1589751.A0A0C5AEJ9_9CAUD	291.0	0	DNA binding	N/A
Pfam	UHGV-0312626_7	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
Pfam	UHGV-0312626_7	PF03374	N/A	N/A	Phage antirepressor protein KilAC domain	ANT
structural_annotation	UHGV-0312626_7	PF03374,PF02498,TIGR02681,COG3645	N/A	N/A	N/A	N/A
PHROG	UHGV-0312626_9	phrog_7735	80.5	1.8e-23	excisionase	integration and excision
UniRef90	UHGV-0312626_9	UniRef90_UPI001D08B64F	175.0	0	helix-turn-helix domain-containing protein	N/A
Pfam	UHGV-0312626_9	PF12728	N/A	N/A	Helix-turn-helix domain	HTH_17
structural_annotation	UHGV-0312626_9	PF12728,MF_01155,NF033787,COG3311	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0312626_10	NF008912	N/A	N/A	N/A	N/A
PHROG	UHGV-0312626_11	phrog_674	88.0	8.8e-26	N/A	unknown function
UniRef90	UHGV-0312626_11	UniRef90_UPI001D090BA8	503.0	0	N/A	N/A
eggNOG-mapper	UHGV-0312626_11	1415775.U729_15	80.5	0.000000000000012	N/A	N/A
Pfam	UHGV-0312626_11	PF07083	N/A	N/A	N/A	DUF1351
structural_annotation	UHGV-0312626_11	PF07083	N/A	N/A	N/A	N/A
PHROG	UHGV-0312626_12	phrog_7838	115.7	3.2e-34	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0312626_12	UniRef90_UPI001D07B780	423.0	0	RAD52 family DNA repair protein	N/A
eggNOG-mapper	UHGV-0312626_12	1485543.JMME01000021_gene803	116.0	4.23e-30	N/A	N/A
Pfam	UHGV-0312626_12	PF04098	N/A	N/A	Rad52/22 family double-strand break repair protein	Rad52_Rad22
structural_annotation	UHGV-0312626_12	PF06420,TIGR00607,COG4712	N/A	N/A	N/A	N/A
PHROG	UHGV-0312626_13	phrog_72	68.3	1.1e-19	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0312626_13	1507.HMPREF0262_00432	94.7	6.03e-22	N/A	N/A
KOfam	UHGV-0312626_14	K07451	50.4	0.000000000000044	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	N/A
PHROG	UHGV-0312626_14	phrog_7370	56.5	5.3e-16	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0312626_14	UniRef90_A0A2S7ZGY4	186.0	0	HNHc domain-containing protein	N/A
eggNOG-mapper	UHGV-0312626_14	323259.Mhun_1686	55.5	0.0000000308	COG1403 Restriction endonuclease	N/A
Pfam	UHGV-0312626_14	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0312626_14	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-0312626_14	PF01844,COG1403	N/A	N/A	N/A	N/A
PHROG	UHGV-0312626_16	phrog_5968	160.7	0	replisome organizer	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0312626_16	UniRef90_UPI000E7581D8	352.0	0	phage replisome organizer N-terminal domain-containing protein	N/A
eggNOG-mapper	UHGV-0312626_16	411473.RUMCAL_00873	170.0	0	Phage replisome organizer, N-terminal domain protein	N/A
Pfam	UHGV-0312626_16	PF09681	N/A	N/A	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
NCBIFam	UHGV-0312626_16	TIGR01714.1	N/A	N/A	phage replisome organizer, putative, N-terminal region	N/A
COG	UHGV-0312626_16	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0312626_16	PF09681,TIGR01714,COG0640	N/A	N/A	N/A	N/A
PHROG	UHGV-0312626_17	phrog_9804	74.5	1.5e-21	N/A	unknown function
UniRef90	UHGV-0312626_17	UniRef90_A0A3A9I1A3	55.1	0.00000908	Inhibitor_G39P domain-containing protein	N/A
structural_annotation	UHGV-0312626_17	PF11417	N/A	N/A	N/A	N/A
KOfam	UHGV-0312626_20	K03111	143.2	3.09967e-42	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0312626_20	phrog_44	124.9	6.9e-37	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0312626_20	UniRef90_UPI001D069DF3	228.0	0	single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0312626_20	879309.HMPREF9199_0149	195.0	0	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-0312626_20	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0312626_20	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0312626_20	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0312626_20	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0312626_20	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0312626_21	PF11305,MF_01360	N/A	N/A	N/A	N/A
PHROG	UHGV-0312626_22	phrog_1672	48.8	0.000000000000082	N/A	unknown function
UniRef90	UHGV-0312626_22	UniRef90_F5L204	116.0	1.17e-30	Conserved domain protein	N/A
structural_annotation	UHGV-0312626_23	PF11305,MF_01360	N/A	N/A	N/A	N/A
PHROG	UHGV-0312626_26	phrog_2776	48.8	0.000000000000097	N/A	unknown function
UniRef90	UHGV-0312626_26	UniRef90_A0A2S7ZCT0	159.0	0	DNA repair protein MmcB-related protein	N/A
Pfam	UHGV-0312626_26	PF06319	N/A	N/A	DNA repair protein MmcB-like	MmcB-like
structural_annotation	UHGV-0312626_26	PF06319,NF033832,COG5321	N/A	N/A	N/A	N/A
KOfam	UHGV-0312626_27	K00571	118.7	7e-35	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-0312626_27	phrog_67	97.2	1e-29	DNA methyltransferase	other
UniRef90	UHGV-0312626_27	UniRef90_UPI00196047F8	509.0	0	site-specific DNA-methyltransferase	N/A
eggNOG-mapper	UHGV-0312626_27	749222.Nitsa_1817	382.0	0	Belongs to the N(4) N(6)-methyltransferase family	N/A
PADLOC	UHGV-0312626_27	MTase_II_00157	101.7	1.5e-30	Type II methyltransferase	RM
Pfam	UHGV-0312626_27	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-0312626_27	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-0312626_27	PF01555,MF_01872,NF010253,COG0863	N/A	N/A	N/A	N/A
PHROG	UHGV-0312626_28	phrog_918	94.6	5.4e-28	N/A	unknown function
UniRef90	UHGV-0312626_28	UniRef90_UPI001CACBF45	184.0	0	N/A	N/A
eggNOG-mapper	UHGV-0312626_28	1401067.HMPREF0872_03440	103.0	5.77e-28	N/A	N/A
Pfam	UHGV-0312626_28	PF19791	N/A	N/A	N/A	DUF6275
structural_annotation	UHGV-0312626_28	PF19791	N/A	N/A	N/A	N/A
PHROG	UHGV-0312626_29	phrog_244	52.8	0.0000000000000084	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0312626_29	UniRef90_A0A841R0Q1	111.0	1e-29	Holliday junction resolvase	N/A
eggNOG-mapper	UHGV-0312626_29	1200557.JHWV01000001_gene280	111.0	3.09e-30	N/A	N/A
structural_annotation	UHGV-0312626_29	PF01870,MF_01490,NF040854,COG1591	N/A	N/A	N/A	N/A
KOfam	UHGV-0312626_30	K01520	60.3	3.7e-17	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	N/A
PHROG	UHGV-0312626_30	phrog_135	72.3	7.7e-21	dUTPase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0312626_30	UniRef90_UPI001D0616FF	157.0	0	dUTP diphosphatase	N/A
eggNOG-mapper	UHGV-0312626_30	66692.ABC2847	79.3	1.56e-17	deoxyuridine 5'-triphosphate nucleotidohydrolase	N/A
Pfam	UHGV-0312626_30	PF00692	N/A	N/A	dUTPase	dUTPase
COG	UHGV-0312626_30	COG0756	N/A	N/A	dUTP pyrophosphatase (dUTPase)	N/A
structural_annotation	UHGV-0312626_30	PF00692,MF_00116,TIGR00576,COG0756	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0312626_31	PF14083	N/A	N/A	N/A	N/A
PHROG	UHGV-0312626_33	phrog_21026	64.7	1.4e-19	N/A	unknown function
PHROG	UHGV-0312626_35	phrog_36	49.6	0.000000000000076	transcriptional regulator	transcription regulation
UniRef90	UHGV-0312626_35	UniRef90_D1YMC4	85.5	2.63e-18	Phage transcriptional regulator, ArpU family	N/A
eggNOG-mapper	UHGV-0312626_35	706434.HMPREF9429_00383	51.6	0.00000346	N/A	N/A
structural_annotation	UHGV-0312626_35	PF07374,TIGR02984	N/A	N/A	N/A	N/A
KOfam	UHGV-0312626_38	K07474	132.6	5.3e-39	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-0312626_38	phrog_51	134.9	4.00001e-40	terminase small subunit	head and packaging
UniRef90	UHGV-0312626_38	UniRef90_UPI001D065029	271.0	0	terminase small subunit	N/A
eggNOG-mapper	UHGV-0312626_38	1280689.AUJC01000003_gene961	123.0	2.77e-34	Terminase small subunit	N/A
Pfam	UHGV-0312626_38	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-0312626_38	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0312626_38	PF03592,COG3728	N/A	N/A	N/A	N/A
PHROG	UHGV-0312626_39	phrog_5902	246.1	0	N/A	unknown function
UniRef90	UHGV-0312626_39	UniRef90_A0A1B1I1J7	581.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0312626_39	1200557.JHWV01000001_gene277	583.0	0	Terminase RNaseH-like domain	N/A
COG	UHGV-0312626_39	COG0507	N/A	N/A	ATPase/5'-3' helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V)	N/A
structural_annotation	UHGV-0312626_39	PF03237,PF20441,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0312626_41	phrog_332	456.3	0	head-tail adaptor	connector
UniRef90	UHGV-0312626_41	UniRef90_UPI001D07F371	1082.0	0	portal protein	N/A
eggNOG-mapper	UHGV-0312626_41	1401067.HMPREF0872_06810	592.0	0	Bacteriophage head to tail connecting protein	N/A
Pfam	UHGV-0312626_41	PF12236	N/A	N/A	Bacteriophage head to tail connecting protein	Head-tail_con
structural_annotation	UHGV-0312626_41	PF12236,MF_04120,TIGR01538,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-0312626_42	phrog_528	78.3	4.9e-23	N/A	unknown function
UniRef90	UHGV-0312626_42	UniRef90_A0A4S4AWB3	55.1	0.000000145	Endopeptidase	N/A
eggNOG-mapper	UHGV-0312626_42	1401067.HMPREF0872_06805	82.0	7.04e-19	N/A	N/A
PHROG	UHGV-0312626_43	phrog_458	89.3	5.7e-26	protease	other
eggNOG-mapper	UHGV-0312626_43	1401067.HMPREF0872_06800	118.0	1.66e-30	N/A	N/A
PHROG	UHGV-0312626_44	phrog_212	166.2	0	major head protein	head and packaging
UniRef90	UHGV-0312626_44	UniRef90_A0A239Z8I8	604.0	0	Phage capsid family	N/A
eggNOG-mapper	UHGV-0312626_44	1401067.HMPREF0872_06795	368.0	0	N/A	N/A
Pfam	UHGV-0312626_44	PF20911	N/A	N/A	Major capsid protein GP7	GP7
structural_annotation	UHGV-0312626_44	PF20911,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0312626_45	phrog_427	41.6	0.00000000002	N/A	unknown function
structural_annotation	UHGV-0312626_45	PF21190	N/A	N/A	N/A	N/A
PHROG	UHGV-0312626_47	phrog_394	168.7	0	tail protein	tail
eggNOG-mapper	UHGV-0312626_47	1401067.HMPREF0872_06780	215.0	0	N/A	N/A
structural_annotation	UHGV-0312626_47	PF17212	N/A	N/A	N/A	N/A
PHROG	UHGV-0312626_48	phrog_376	636.5	0	tail protein	tail
UniRef90	UHGV-0312626_48	UniRef90_A0A3A4JUE0	324.0	0	E1_FCCH domain-containing protein	N/A
eggNOG-mapper	UHGV-0312626_48	1401067.HMPREF0872_06775	636.0	0	N/A	N/A
structural_annotation	UHGV-0312626_48	PF11134,MF_00923,TIGR03300,COG2706	N/A	N/A	N/A	N/A
PHROG	UHGV-0312626_49	phrog_308	76.8	2.8e-22	internal virion protein	head and packaging
UniRef90	UHGV-0312626_49	UniRef90_UPI001D08FF44	330.0	0	N/A	N/A
Pfam	UHGV-0312626_49	PF11090	N/A	N/A	Bacteriophage T7, probable scaffold protein Gp13	Phage_T7_Gp13
structural_annotation	UHGV-0312626_49	PF11039,MF_02210,NF000165,COG1247	N/A	N/A	N/A	N/A
PHROG	UHGV-0312626_50	phrog_418	62.8	5.2e-18	internal virion protein	head and packaging
eggNOG-mapper	UHGV-0312626_50	1401067.HMPREF0872_06765	169.0	0	N/A	N/A
structural_annotation	UHGV-0312626_50	PF05384,TIGR01010,COG3524	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0312626_51	1401067.HMPREF0872_06760	79.7	3.01e-16	N/A	N/A