UHGV-0385804 (vOTU-051815)

Viral Genome: UHGV-0385804

Genome Information

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Overview
UHGV ID	UHGV-0385804
vOTU ID	vOTU-051815
Representative Genome?	Yes
Source	Benler
Original Genome ID	QWCN01002334.1
Associated Biosample	SAMN09866707
Viral Genome Confidence	Confident

Quality Assessment
CheckV Method	DTR
CheckV Completeness	100 (Complete)
Trimmed?	No
CheckV Viral Markers	9
CheckV Host Markers	1
Recoded?	No

Viral Content
geNomad score	0.9771
Viral Hallmark Genes (geNomad)	6
Plasmid Hallmark Genes (geNomad)	0
ViralVerify Prediction	Uncertain - viral or bacterial
ViralVerify Score	5.4
Jumbo Phage?	No

Genome Content
Length (bps)	40,125
GC Content	57.64%
Genetic Code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS Genes	63
CDS Density	89%
Average CDS Length (bps)	564.71
Total tRNA Genes	1
Suppressor tRNA Genes	0

Genome Content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0385804_1	phrog_199	87.4	1.6e-25	holin	lysis
UniRef90	UHGV-0385804_1	UniRef90_UPI001C00C30F	279.0	0	phage holin family protein	N/A
eggNOG-mapper	UHGV-0385804_1	411467.BACCAP_00280	138.0	6.8e-40	Bacteriophage holin family	N/A
Pfam	UHGV-0385804_1	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-0385804_1	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-0385804_1	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-0385804_1	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
KOfam	UHGV-0385804_2	K08640	88.1	8.7e-26	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	N/A
PHROG	UHGV-0385804_2	phrog_18955	155.2	0	N/A	unknown function
UniRef90	UHGV-0385804_2	UniRef90_UPI001C035E39	591.0	0	D-Ala-D-Ala carboxypeptidase family metallohydrolase	N/A
eggNOG-mapper	UHGV-0385804_2	1235797.C816_04171	329.0	0	Peptidase M15	N/A
Pfam	UHGV-0385804_2	PF09992	N/A	N/A	Phosphodiester glycosidase	NAGPA
Pfam	UHGV-0385804_2	PF08291	N/A	N/A	Peptidase M15	Peptidase_M15_3
COG	UHGV-0385804_2	COG3108	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0385804_2	PF09992,PF08291,COG4632,COG3108	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0385804_3	693746.OBV_01600	154.0	4.6e-38	N/A	N/A
eggNOG-mapper	UHGV-0385804_4	1519439.JPJG01000060_gene1905	174.0	2.38221e-44	N/A	N/A
UniRef90	UHGV-0385804_5	UniRef90_A0A810QFN4	994.0	0	LPD3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0385804_5	693746.OBV_01590	595.0	0	N/A	N/A
Pfam	UHGV-0385804_5	PF18819	N/A	N/A	Phage MuF-C-terminal domain	MuF_C
UniRef90	UHGV-0385804_9	UniRef90_UPI001C037734	70.5	0.0000000000000136	LuxR C-terminal-related transcriptional regulator	N/A
structural_annotation	UHGV-0385804_9	PF04545,MF_00245,NF001067,COG2771	N/A	N/A	N/A	N/A
KOfam	UHGV-0385804_10	K02647	42.4	0.0000000000076	cdaR; carbohydrate diacid regulator	N/A
UniRef90	UHGV-0385804_10	UniRef90_K1SN71	120.0	2.36e-34	HTH_30 domain-containing protein	N/A
eggNOG-mapper	UHGV-0385804_10	1122917.KB899661_gene912	53.9	0.000000147	Putative sugar diacid recognition	N/A
Pfam	UHGV-0385804_10	PF13556	N/A	N/A	PucR C-terminal helix-turn-helix domain	HTH_30
COG	UHGV-0385804_10	COG3835	N/A	N/A	Sugar diacid utilization regulator CdaR	N/A
structural_annotation	UHGV-0385804_10	PF13556,TIGR00637,COG2771	N/A	N/A	N/A	N/A
UniRef90	UHGV-0385804_11	UniRef90_A0A845MZZ9	87.8	2.8e-20	N/A	N/A
UniRef90	UHGV-0385804_15	UniRef90_A0A8D9PDT5	53.1	0.000000598	Hydrogenase/urease nickel incorporation protein	N/A
PHROG	UHGV-0385804_18	phrog_3136	119.9	9.1e-36	N/A	unknown function
UniRef90	UHGV-0385804_18	UniRef90_A0A3D0HBD2	131.0	2.97e-35	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-0385804_18	97139.C824_00742	58.5	0.0000000267	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	N/A
COG	UHGV-0385804_18	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
structural_annotation	UHGV-0385804_18	PF08819,MF_00684,NF008917,COG4933	N/A	N/A	N/A	N/A
Pfam	UHGV-0385804_19	PF04448	N/A	N/A	N/A	DUF551
PHROG	UHGV-0385804_20	phrog_954	199.7	0	DNA methyltransferase	other
UniRef90	UHGV-0385804_20	UniRef90_A0A810Q0N4	308.0	0	Methyltransferase	N/A
eggNOG-mapper	UHGV-0385804_20	1280698.AUJS01000007_gene1028	277.0	0	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA	N/A
PADLOC	UHGV-0385804_20	MTase_II_00074	206.4	0	Type II methyltransferase	RM
Pfam	UHGV-0385804_20	PF08241	N/A	N/A	Methyltransferase domain	Methyltransf_11
COG	UHGV-0385804_20	COG1092	N/A	N/A	23S rRNA G2069 N7-methylase RlmK or C1962 C5-methylase RlmI	N/A
structural_annotation	UHGV-0385804_20	PF05148,MF_03044,NF033398,COG1041	N/A	N/A	N/A	N/A
PHROG	UHGV-0385804_21	phrog_757	186.2	0	DNA methyltransferase	other
UniRef90	UHGV-0385804_21	UniRef90_UPI001A9B5584	431.0	0	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-0385804_21	748224.HMPREF9436_03069	305.0	0	DNA (cytosine-5-)-methyltransferase activity	N/A
COG	UHGV-0385804_21	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0385804_21	PF00145,MF_01872,TIGR00675,COG0270	N/A	N/A	N/A	N/A
PHROG	UHGV-0385804_22	phrog_474	92.5	8e-27	phosphofructokinase	other
UniRef90	UHGV-0385804_22	UniRef90_A0A2V2EHL9	158.0	0	N/A	N/A
eggNOG-mapper	UHGV-0385804_22	1203606.HMPREF1526_00237	96.3	1.15e-24	N/A	N/A
Pfam	UHGV-0385804_22	PF19905	N/A	N/A	N/A	DUF6378
structural_annotation	UHGV-0385804_22	PF19905	N/A	N/A	N/A	N/A
KOfam	UHGV-0385804_24	K01160	63.2	7.1e-18	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0385804_24	phrog_140	117.8	7.7e-35	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0385804_24	UniRef90_A0A7X9D805	112.0	3e-29	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0385804_24	1095750.HMPREF9970_1673	98.6	1.55e-24	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-0385804_24	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0385804_24	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0385804_24	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0385804_27	PF11417	N/A	N/A	N/A	N/A
KOfam	UHGV-0385804_28	K03111	47.9	0.00000000000032	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0385804_28	phrog_44	42.0	0.000000000021	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0385804_28	UniRef90_A0A4D7AYE9	137.0	5e-39	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0385804_28	883156.HMPREF9282_01225	52.4	0.00000105	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-0385804_28	PF00436	N/A	N/A	Single-strand binding protein family	SSB
COG	UHGV-0385804_28	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0385804_28	PF00436,MF_00984,TIGR04418,COG2965	N/A	N/A	N/A	N/A
PHROG	UHGV-0385804_29	phrog_10048	52.4	3.5e-26	N/A	unknown function
eggNOG-mapper	UHGV-0385804_29	1111134.HMPREF1253_1200	106.0	3.91e-25	N/A	N/A
structural_annotation	UHGV-0385804_29	PF04404,TIGR00607,COG5055	N/A	N/A	N/A	N/A
PHROG	UHGV-0385804_30	phrog_298	74.2	1.1e-22	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0385804_30	UniRef90_UPI00058C5410	92.4	5.93e-20	PD-(D/E)XK nuclease family protein	N/A
eggNOG-mapper	UHGV-0385804_30	640132.Srot_0032	56.2	0.000000617	Belongs to the helicase family. UvrD subfamily	N/A
COG	UHGV-0385804_30	COG2887	N/A	N/A	RecB family exonuclease	N/A
structural_annotation	UHGV-0385804_30	PF12705,MF_03030,TIGR00372,COG2887	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0385804_32	PF14354,TIGR03655	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0385804_35	PF18359,COG4466	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0385804_36	PF12728	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0385804_37	760568.Desku_0919	112.0	4.25e-28	N/A	N/A
structural_annotation	UHGV-0385804_37	PF03787,TIGR02581,COG1604	N/A	N/A	N/A	N/A
PHROG	UHGV-0385804_39	phrog_14556	40.5	0.00000000002	N/A	unknown function
eggNOG-mapper	UHGV-0385804_39	696281.Desru_2490	79.3	0.0000000000000171	PFAM nuclease (SNase	N/A
COG	UHGV-0385804_39	COG1525	N/A	N/A	Endonuclease YncB, thermonuclease family	N/A
UniRef90	UHGV-0385804_40	UniRef90_UPI001D0E690A	99.4	4.71e-26	helix-turn-helix domain-containing protein	N/A
COG	UHGV-0385804_40	COG3655	N/A	N/A	DNA-binding transcriptional regulator, XRE family	N/A
structural_annotation	UHGV-0385804_40	PF05339,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0385804_41	K22300	76.7	4.5e-22	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0385804_41	phrog_2967	56.4	6.2e-16	transcriptional regulator	transcription regulation
UniRef90	UHGV-0385804_41	UniRef90_K1TCM8	213.0	0	Protein containing Helix-turn-helix type 3 domain protein	N/A
eggNOG-mapper	UHGV-0385804_41	1378168.N510_01124	56.6	0.0000000664	Transcriptional	N/A
Pfam	UHGV-0385804_41	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0385804_41	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0385804_41	PF12844,MF_00535,NF007257,COG1396	N/A	N/A	N/A	N/A
Pfam	UHGV-0385804_42	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0385804_42	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0385804_42	PF21291,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0385804_43	K14059	182.0	0	int; integrase	N/A
PHROG	UHGV-0385804_43	phrog_1	182.5	0	integrase	integration and excision
UniRef90	UHGV-0385804_43	UniRef90_A0A4D7AYG4	531.0	0	Site-specific integrase	N/A
eggNOG-mapper	UHGV-0385804_43	693746.OBV_01970	414.0	0	Phage integrase family	N/A
Pfam	UHGV-0385804_43	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0385804_43	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0385804_43	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0385804_45	PF17917	N/A	N/A	N/A	N/A
PHROG	UHGV-0385804_49	phrog_15863	165.1	0	N/A	unknown function
UniRef90	UHGV-0385804_49	UniRef90_A0A810QAR9	289.0	0	Molecular chaperone DnaJ	N/A
eggNOG-mapper	UHGV-0385804_49	693746.OBV_01780	244.0	0	DnaJ molecular chaperone homology domain	N/A
COG	UHGV-0385804_49	COG2214	N/A	N/A	Curved DNA-binding protein CbpA, contains a DnaJ-like domain	N/A
structural_annotation	UHGV-0385804_50	PF10723	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0385804_52	693746.OBV_01750	108.0	8.34e-28	N/A	N/A
eggNOG-mapper	UHGV-0385804_54	1519439.JPJG01000011_gene57	135.0	7.05e-39	N/A	N/A
structural_annotation	UHGV-0385804_54	PF11650	N/A	N/A	N/A	N/A
UniRef90	UHGV-0385804_55	UniRef90_A0A4D7B2L2	61.6	0.0000000000303	Cysteine-rich KTR domain-containing protein	N/A
Pfam	UHGV-0385804_55	PF14205	N/A	N/A	Cysteine-rich KTR	Cys_rich_KTR
structural_annotation	UHGV-0385804_55	PF14205,COG4416	N/A	N/A	N/A	N/A
PHROG	UHGV-0385804_56	phrog_9467	198.2	0	N/A	unknown function
UniRef90	UHGV-0385804_56	UniRef90_UPI001C3853B3	156.0	0	Gp49 family protein	N/A
eggNOG-mapper	UHGV-0385804_56	1226322.HMPREF1545_00781	213.0	0	N/A	N/A
Pfam	UHGV-0385804_56	PF13876	N/A	N/A	N/A	Phage_gp49_66
dbAPIS	UHGV-0385804_56	APIS043	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0385804_56	PF13876	N/A	N/A	N/A	N/A
PHROG	UHGV-0385804_58	phrog_422	101.0	1.1e-29	major head protein	head and packaging
UniRef90	UHGV-0385804_58	UniRef90_K1TJJ5	371.0	0	Gp7 (Fragment)	N/A
eggNOG-mapper	UHGV-0385804_58	693746.OBV_01700	518.0	0	N/A	N/A
Pfam	UHGV-0385804_58	PF13290	N/A	N/A	Chitobiase/beta-hexosaminidase C-terminal domain	CHB_HEX_C_1
structural_annotation	UHGV-0385804_58	PF19821,PF13287,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-0385804_59	K06909	141.3	7.90052e-42	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0385804_59	phrog_979	146.4	1.12104e-44	terminase large subunit	head and packaging
UniRef90	UHGV-0385804_59	UniRef90_K1SF61	773.0	0	Terminase-like protein (Fragment)	N/A
eggNOG-mapper	UHGV-0385804_59	693746.OBV_01690	691.0	0	phage Terminase large subunit	N/A
Pfam	UHGV-0385804_59	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
COG	UHGV-0385804_59	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0385804_59	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0385804_60	phrog_3287	40.9	0.000000000003	virion structural protein	head and packaging
UniRef90	UHGV-0385804_60	UniRef90_A0A4D7ASB8	784.0	0	N/A	N/A
eggNOG-mapper	UHGV-0385804_60	693746.OBV_01680	729.0	0	N/A	N/A
structural_annotation	UHGV-0385804_60	PF11134,MF_03027,NF010237,TIGR03511,COG2319	N/A	N/A	N/A	N/A
PHROG	UHGV-0385804_61	phrog_156	105.5	5.1e-33	portal protein	head and packaging
eggNOG-mapper	UHGV-0385804_61	693746.OBV_01670	776.0	0	N/A	N/A
structural_annotation	UHGV-0385804_61	PF16510,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A