UHGV-0385930 (vOTU-060780)

Viral Genome: UHGV-0385930

Genome Information

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Overview
UHGV ID	UHGV-0385930
vOTU ID	vOTU-060780
Representative Genome?	Yes
Source	COPSAC
Original Genome ID	OTU_2177
Associated Biosample	N/A
Viral Genome Confidence	Confident

Quality Assessment
CheckV Method	AAI-based
CheckV Completeness	92.26 (High-quality)
Trimmed?	No
CheckV Viral Markers	17
CheckV Host Markers	0
Recoded?	No

Viral Content
geNomad score	0.98
Viral Hallmark Genes (geNomad)	7
Plasmid Hallmark Genes (geNomad)	0
ViralVerify Prediction	Virus
ViralVerify Score	32.33
Jumbo Phage?	No

Genome Content
Length (bps)	40,211
GC Content	41.03%
Genetic Code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS Genes	79
CDS Density	91%
Average CDS Length (bps)	463.29
Total tRNA Genes	0
Suppressor tRNA Genes	0

Genome Content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 92.26)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0385930_2	phrog_6148	55.4	8.3e-16	beta-lactamase-inhibitor protein BLIP	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0385930_2	UniRef90_UPI0013F64234	472.0	0	N/A	N/A
eggNOG-mapper	UHGV-0385930_2	742740.HMPREF9474_04329	158.0	1.06499e-43	N/A	N/A
Pfam	UHGV-0385930_2	PF12978	N/A	N/A	N/A	DUF3862
structural_annotation	UHGV-0385930_2	PF12978,PF20794,MF_00925,NF008423,COG4687,COG2913	N/A	N/A	N/A	N/A
KOfam	UHGV-0385930_3	K14059	179.3	0	int; integrase	N/A
PHROG	UHGV-0385930_3	phrog_1	163.3	0	integrase	integration and excision
UniRef90	UHGV-0385930_3	UniRef90_UPI001D155F20	685.0	0	tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-0385930_3	1304866.K413DRAFT_3002	300.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0385930_3	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-0385930_3	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0385930_3	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0385930_3	PF00589,PF12167,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A
KOfam	UHGV-0385930_5	K17733	149.7	1.82169e-44	cwlK; peptidoglycan LD-endopeptidase CwlK [EC:3.4.-.-]	N/A
PHROG	UHGV-0385930_5	phrog_2649	134.4	9.7e-40	endolysin	lysis
UniRef90	UHGV-0385930_5	UniRef90_R0BKC0	520.0	0	Peptidase_M15_4 domain-containing protein	N/A
eggNOG-mapper	UHGV-0385930_5	742733.HMPREF9469_01368	470.0	0	D-alanyl-D-alanine carboxypeptidase	N/A
Pfam	UHGV-0385930_5	PF13539	N/A	N/A	D-alanyl-D-alanine carboxypeptidase	Peptidase_M15_4
COG	UHGV-0385930_5	COG1876	N/A	N/A	LD-carboxypeptidase LdcB, LAS superfamily	N/A
structural_annotation	UHGV-0385930_5	PF02557,PF19127,MF_01924,NF007557,TIGR04035,COG2173	N/A	N/A	N/A	N/A
UniRef90	UHGV-0385930_6	UniRef90_A0A352P5F4	47.0	0.00000497	XkdX family protein	N/A
eggNOG-mapper	UHGV-0385930_6	1304866.K413DRAFT_3056	44.3	0.00000937	N/A	N/A
structural_annotation	UHGV-0385930_6	PF09693,TIGR01669	N/A	N/A	N/A	N/A
PHROG	UHGV-0385930_7	phrog_12931	53.2	0.0000000000000053	N/A	unknown function
eggNOG-mapper	UHGV-0385930_7	1298920.KI911353_gene2672	50.8	0.00000435	N/A	N/A
eggNOG-mapper	UHGV-0385930_9	1298920.KI911353_gene541	56.2	0.00000169	ATPase involved in DNA repair	N/A
COG	UHGV-0385930_9	COG0419	N/A	N/A	DNA repair exonuclease SbcCD ATPase subunit	N/A
structural_annotation	UHGV-0385930_9	PF07675,NF038128	N/A	N/A	N/A	N/A
COG	UHGV-0385930_10	COG0419	N/A	N/A	DNA repair exonuclease SbcCD ATPase subunit	N/A
eggNOG-mapper	UHGV-0385930_11	411902.CLOBOL_00122	86.3	2.48e-19	N/A	N/A
PHROG	UHGV-0385930_12	phrog_18725	57.9	1.9e-16	N/A	unknown function
eggNOG-mapper	UHGV-0385930_12	411902.CLOBOL_00123	129.0	1.82e-36	N/A	N/A
PHROG	UHGV-0385930_13	phrog_32744	172.0	0	N/A	unknown function
eggNOG-mapper	UHGV-0385930_13	411902.CLOBOL_00124	468.0	0	N/A	N/A
structural_annotation	UHGV-0385930_13	PF14594,PF03256,NF033848,COG4379,COG5156	N/A	N/A	N/A	N/A
PHROG	UHGV-0385930_14	phrog_1194	49.7	0.000000000000052	N/A	unknown function
eggNOG-mapper	UHGV-0385930_14	411902.CLOBOL_00125	125.0	4.5e-35	N/A	N/A
structural_annotation	UHGV-0385930_14	PF20458,TIGR01633,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0385930_15	phrog_37543	719.0	0	N/A	unknown function
UniRef90	UHGV-0385930_15	UniRef90_UPI001DBC5439	295.0	0	PspA/IM30 family protein	N/A
eggNOG-mapper	UHGV-0385930_15	1298920.KI911353_gene2068	185.0	1.4013e-45	domain protein	N/A
COG	UHGV-0385930_15	COG1511	N/A	N/A	N/A	N/A
PHROG	UHGV-0385930_16	phrog_706	127.7	8.3e-38	N/A	unknown function
UniRef90	UHGV-0385930_16	UniRef90_UPI00156F1927	196.0	0	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-0385930_16	411902.CLOBOL_00127	176.0	0	N/A	N/A
Pfam	UHGV-0385930_16	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0385930_16	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0385930_17	phrog_11299	117.1	1.2e-34	N/A	unknown function
eggNOG-mapper	UHGV-0385930_17	411459.RUMOBE_01382	67.0	0.00000000000502	N/A	N/A
structural_annotation	UHGV-0385930_17	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-0385930_18	phrog_3099	123.0	1.9e-36	N/A	unknown function
eggNOG-mapper	UHGV-0385930_18	1120746.CCNL01000014_gene2102	122.0	5.57e-33	N/A	N/A
structural_annotation	UHGV-0385930_18	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0385930_19	phrog_3266	99.6	2.1e-29	tail completion	connector
eggNOG-mapper	UHGV-0385930_19	476272.RUMHYD_01781	158.0	0	N/A	N/A
structural_annotation	UHGV-0385930_19	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-0385930_20	phrog_556	61.9	4.6e-18	minor head protein	head and packaging
UniRef90	UHGV-0385930_20	UniRef90_UPI0008B4CFF0	233.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-0385930_20	476272.RUMHYD_01780	169.0	0	N/A	N/A
Pfam	UHGV-0385930_20	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0385930_20	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-0385930_21	phrog_3366	95.5	4.6e-28	N/A	unknown function
eggNOG-mapper	UHGV-0385930_21	476272.RUMHYD_01779	147.0	4.76441e-43	N/A	N/A
structural_annotation	UHGV-0385930_21	PF20536,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0385930_22	phrog_1129	72.7	3.4e-21	holin	lysis
UniRef90	UHGV-0385930_22	UniRef90_A0A417JD09	150.0	1.4013e-45	Enolase	N/A
eggNOG-mapper	UHGV-0385930_22	411461.DORFOR_00721	132.0	3.2e-39	N/A	N/A
Pfam	UHGV-0385930_22	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0385930_22	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-0385930_23	phrog_541	95.0	4.3e-28	head-tail adaptor	connector
eggNOG-mapper	UHGV-0385930_23	476272.RUMHYD_01778	136.0	7.93e-39	N/A	N/A
PHROG	UHGV-0385930_24	phrog_544	194.4	0	major head protein	head and packaging
UniRef90	UHGV-0385930_24	UniRef90_A0A810PZM2	469.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0385930_24	1347392.CCEZ01000005_gene1236	291.0	0	N/A	N/A
structural_annotation	UHGV-0385930_24	PF03864,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
PHROG	UHGV-0385930_25	phrog_194	62.6	8.2e-18	head scaffolding protein	head and packaging
UniRef90	UHGV-0385930_25	UniRef90_UPI001D14C9C8	279.0	0	phage scaffolding protein	N/A
eggNOG-mapper	UHGV-0385930_25	476272.RUMHYD_01775	199.0	0	COG NOG36366 non supervised orthologous group	N/A
Pfam	UHGV-0385930_25	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
UniRef90	UHGV-0385930_27	UniRef90_N9YMZ1	182.0	0	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0385930_27	411470.RUMGNA_03786	62.0	0.0000000000973	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0385930_27	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0385930_27	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0385930_27	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0385930_28	phrog_374	54.8	5.5e-26	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0385930_28	UniRef90_A0A0U5PL36	329.0	0	AP2 domain protein	N/A
eggNOG-mapper	UHGV-0385930_28	1304866.K413DRAFT_4685	213.0	0	N/A	N/A
structural_annotation	UHGV-0385930_28	PF00847	N/A	N/A	N/A	N/A
PHROG	UHGV-0385930_29	phrog_28802	248.4	0	N/A	unknown function
eggNOG-mapper	UHGV-0385930_29	476272.RUMHYD_01772	263.0	0	N/A	N/A
PHROG	UHGV-0385930_30	phrog_20016	53.1	0.0000000000000042	N/A	unknown function
eggNOG-mapper	UHGV-0385930_30	1235790.C805_00062	52.0	0.00000153	N/A	N/A
structural_annotation	UHGV-0385930_30	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-0385930_32	phrog_16490	201.9	0	N/A	unknown function
eggNOG-mapper	UHGV-0385930_32	658655.HMPREF0988_00917	176.0	0	N/A	N/A
PHROG	UHGV-0385930_33	phrog_22984	78.2	8.5e-23	N/A	unknown function
PHROG	UHGV-0385930_34	phrog_21718	162.7	0	N/A	unknown function
eggNOG-mapper	UHGV-0385930_34	476272.RUMHYD_01768	160.0	0	N/A	N/A
UniRef90	UHGV-0385930_35	UniRef90_A0A843HPX3	75.5	1.18e-16	Sigma-70 family RNA polymerase sigma factor	N/A
eggNOG-mapper	UHGV-0385930_35	1235790.C805_00057	57.4	0.000000000291	N/A	N/A
structural_annotation	UHGV-0385930_35	PF13404,TIGR01636	N/A	N/A	N/A	N/A
UniRef90	UHGV-0385930_36	UniRef90_A0A417UWY7	83.6	8.07e-19	CTP synthase	N/A
eggNOG-mapper	UHGV-0385930_36	411490.ANACAC_00705	94.0	6.96e-24	N/A	N/A
PHROG	UHGV-0385930_37	phrog_3754	110.4	1.3e-32	N/A	unknown function
eggNOG-mapper	UHGV-0385930_37	476272.RUMHYD_01764	214.0	0	N/A	N/A
PHROG	UHGV-0385930_38	phrog_581	277.7	0	minor head protein	head and packaging
UniRef90	UHGV-0385930_38	UniRef90_A0A1C6CDG2	612.0	0	Phage minor capsid protein 2	N/A
eggNOG-mapper	UHGV-0385930_38	33035.JPJF01000106_gene3134	449.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-0385930_38	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0385930_38	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0385930_38	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-0385930_39	phrog_533	288.8	0	portal protein	head and packaging
UniRef90	UHGV-0385930_39	UniRef90_A0A1C6CDM8	675.0	0	Phage portal protein, putative, A118 family	N/A
eggNOG-mapper	UHGV-0385930_39	33035.JPJF01000106_gene3135	521.0	0	phage minor capsid protein	N/A
structural_annotation	UHGV-0385930_39	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0385930_41	phrog_374	159.4	0	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0385930_41	UniRef90_A0A3E2U4F6	317.0	0	AP2 domain-containing protein	N/A
eggNOG-mapper	UHGV-0385930_41	411462.DORLON_00791	153.0	1.82169e-44	N/A	N/A
Pfam	UHGV-0385930_41	PF00847	N/A	N/A	AP2 domain	AP2
structural_annotation	UHGV-0385930_41	PF00847	N/A	N/A	N/A	N/A
KOfam	UHGV-0385930_42	K06909	325.8	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0385930_42	phrog_3717	159.8	0	terminase large subunit	head and packaging
UniRef90	UHGV-0385930_42	UniRef90_A0A3E2U4P7	849.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0385930_42	397291.C804_01612	412.0	0	Phage terminase large subunit	N/A
Pfam	UHGV-0385930_42	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-0385930_42	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-0385930_42	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0385930_42	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0385930_42	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
UniRef90	UHGV-0385930_43	UniRef90_A0A3E2U5Z1	249.0	0	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0385930_43	1235790.C805_00037	144.0	1.62971e-42	N/A	N/A
Pfam	UHGV-0385930_43	PF04218	N/A	N/A	CENP-B N-terminal DNA-binding domain	CENP-B_N
structural_annotation	UHGV-0385930_43	PF13542	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0385930_46	476272.RUMHYD_01751	73.2	0.00000000000000132	N/A	N/A
AcrCatalog	UHGV-0385930_46	cluster_11670	97.8	1.18e-29	NA	N/A
KOfam	UHGV-0385930_47	K04763	184.6	0	xerD; integrase/recombinase XerD	N/A
PHROG	UHGV-0385930_47	phrog_1	157.9	0	integrase	integration and excision
UniRef90	UHGV-0385930_47	UniRef90_UPI001D14C144	512.0	0	tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-0385930_47	1298920.KI911353_gene2699	401.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0385930_47	PF13495	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
Pfam	UHGV-0385930_47	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0385930_47	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0385930_47	PF00589,PF02899,MF_01807,TIGR02224,COG4973	N/A	N/A	N/A	N/A
UniRef90	UHGV-0385930_50	UniRef90_UPI00046712EE	124.0	1.14e-34	N/A	N/A
Pfam	UHGV-0385930_50	PF04448	N/A	N/A	N/A	DUF551
UniRef90	UHGV-0385930_52	UniRef90_UPI00189796FC	87.0	4.44e-21	zinc-ribbon domain-containing protein	N/A
structural_annotation	UHGV-0385930_52	PF13248	N/A	N/A	N/A	N/A
PHROG	UHGV-0385930_56	phrog_13561	53.5	0.0000000000000033	N/A	unknown function
structural_annotation	UHGV-0385930_56	PF21441,COG5045	N/A	N/A	N/A	N/A
PHROG	UHGV-0385930_60	phrog_874	184.4	0	N/A	unknown function
UniRef90	UHGV-0385930_60	UniRef90_A0A3P6JHM7	174.0	0	Upf86.8	N/A
eggNOG-mapper	UHGV-0385930_60	411468.CLOSCI_00298	162.0	0	N/A	N/A
structural_annotation	UHGV-0385930_60	PF04266,MF_00684,NF003443,COG4405	N/A	N/A	N/A	N/A
PHROG	UHGV-0385930_63	phrog_3502	40.2	0.000000000062	N/A	unknown function
UniRef90	UHGV-0385930_63	UniRef90_A0A3E2U401	171.0	0	LexA_DNA_bind domain-containing protein	N/A
eggNOG-mapper	UHGV-0385930_63	911104.AEKT01000020_gene1791	56.2	0.000000022	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	N/A
Pfam	UHGV-0385930_63	PF01726	N/A	N/A	LexA DNA binding domain	LexA_DNA_bind
COG	UHGV-0385930_63	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-0385930_63	PF01726,MF_00732,TIGR00738,COG1959	N/A	N/A	N/A	N/A
PHROG	UHGV-0385930_64	phrog_15768	212.8	0	N/A	unknown function
UniRef90	UHGV-0385930_64	UniRef90_R0D5K9	394.0	0	N/A	N/A
eggNOG-mapper	UHGV-0385930_64	33035.JPJF01000122_gene2459	122.0	1.2e-31	N/A	N/A
AcrCatalog	UHGV-0385930_64	cluster_38323	382.0	0	NA	N/A
Pfam	UHGV-0385930_64	PF19808	N/A	N/A	N/A	DUF6291
structural_annotation	UHGV-0385930_64	PF19808	N/A	N/A	N/A	N/A
PHROG	UHGV-0385930_65	phrog_2113	57.1	2.4e-16	N/A	unknown function
structural_annotation	UHGV-0385930_65	PF21715,TIGR04176,COG1654	N/A	N/A	N/A	N/A
PHROG	UHGV-0385930_67	phrog_398	207.4	0	N/A	unknown function
UniRef90	UHGV-0385930_67	UniRef90_UPI0011780B2F	350.0	0	putative HNHc nuclease	N/A
eggNOG-mapper	UHGV-0385930_67	33035.JPJF01000122_gene2462	259.0	0	Putative HNHc nuclease	N/A
Pfam	UHGV-0385930_67	PF16784	N/A	N/A	Putative HNHc nuclease	HNHc_6
structural_annotation	UHGV-0385930_67	PF16784	N/A	N/A	N/A	N/A
PHROG	UHGV-0385930_68	phrog_7838	150.3	1.12104e-44	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0385930_68	UniRef90_A0A8D9UGW3	207.0	0	DNA repair protein RAD52-like protein	N/A
eggNOG-mapper	UHGV-0385930_68	742767.HMPREF9456_02052	191.0	0	N/A	N/A
structural_annotation	UHGV-0385930_68	PF04098,TIGR00607,COG4380	N/A	N/A	N/A	N/A
UniRef90	UHGV-0385930_75	UniRef90_A0A2Z4QA14	53.5	0.000000205	Immunity protein 58	N/A
AcrCatalog	UHGV-0385930_75	cluster_17974	171.0	0	NA	N/A
eggNOG-mapper	UHGV-0385930_78	1052684.PPM_4557	60.8	0.00000000435	N/A	N/A
NCBIFam	UHGV-0385930_78	TIGR01451.2	N/A	N/A	N/A	N/A
COG	UHGV-0385930_78	COG1361	N/A	N/A	S-layer protein MJ0795, predicted component of type IV pili-like system	N/A
UniRef90	UHGV-0385930_79	UniRef90_A0A173TZM8	69.3	0.0000000000000302	Helix-turn-helix domain	N/A
COG	UHGV-0385930_79	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0385930_79	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A