UHGV-0387340 (vOTU-078663)

Viral Genome: UHGV-0387340

Genome Information

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Overview
UHGV ID	UHGV-0387340
vOTU ID	vOTU-078663
Representative Genome?	Yes
Source	COPSAC
Original Genome ID	OTU_2651
Associated Biosample	N/A
Viral Genome Confidence	Confident

Quality Assessment
CheckV Method	AAI-based
CheckV Completeness	98.28 (High-quality)
Trimmed?	No
CheckV Viral Markers	21
CheckV Host Markers	0
Recoded?	No

Viral Content
geNomad score	0.9817
Viral Hallmark Genes (geNomad)	11
Plasmid Hallmark Genes (geNomad)	0
ViralVerify Prediction	Virus
ViralVerify Score	45.53
Jumbo Phage?	No

Genome Content
Length (bps)	38,237
GC Content	41.38%
Genetic Code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS Genes	46
CDS Density	93%
Average CDS Length (bps)	775.89
Total tRNA Genes	0
Suppressor tRNA Genes	0

Genome Content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 98.28)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0387340_1	phrog_36	41.2	0.00000000003	transcriptional regulator	transcription regulation
Pfam	UHGV-0387340_1	PF07374	N/A	N/A	N/A	DUF1492
PHROG	UHGV-0387340_4	phrog_236	94.8	1.1e-27	nucleotide kinase	other
UniRef90	UHGV-0387340_4	UniRef90_UPI001D0A2658	137.0	3.68e-37	N/A	N/A
eggNOG-mapper	UHGV-0387340_4	546273.VEIDISOL_00707	121.0	3.1e-32	N/A	N/A
Pfam	UHGV-0387340_4	PF11753	N/A	N/A	N/A	DUF3310
structural_annotation	UHGV-0387340_4	PF11753	N/A	N/A	N/A	N/A
PHROG	UHGV-0387340_5	phrog_355	71.5	1e-20	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0387340_5	UniRef90_A0A2S7ZCM0	184.0	0	N/A	N/A
eggNOG-mapper	UHGV-0387340_5	883156.HMPREF9282_01229	141.0	1.04004e-41	N/A	N/A
Pfam	UHGV-0387340_5	PF14359	N/A	N/A	N/A	DUF4406
structural_annotation	UHGV-0387340_5	PF14359,MF_03036,TIGR03646,COG3613	N/A	N/A	N/A	N/A
KOfam	UHGV-0387340_6	K01160	46.9	0.00000000000068	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0387340_6	phrog_140	107.3	1.3e-31	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0387340_6	UniRef90_D1YMB8	224.0	0	Crossover junction endodeoxyribonuclease RusA	N/A
eggNOG-mapper	UHGV-0387340_6	1123315.AUIP01000003_gene219	168.0	0	crossover junction endodeoxyribonuclease RusA	N/A
Pfam	UHGV-0387340_6	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0387340_6	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0387340_7	NF010236	N/A	N/A	N/A	N/A
PHROG	UHGV-0387340_9	phrog_1672	50.7	0.000000000000024	N/A	unknown function
UniRef90	UHGV-0387340_9	UniRef90_F5L204	122.0	7e-33	Conserved domain protein	N/A
KOfam	UHGV-0387340_10	K07505	367.9	0	repA; regulatory protein RepA	N/A
PHROG	UHGV-0387340_10	phrog_2597	949.7	0	DNA primase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0387340_10	UniRef90_D1YMB7	1096.0	0	Primase C terminal 2 (PriCT-2)	N/A
eggNOG-mapper	UHGV-0387340_10	999413.HMPREF1094_00232	777.0	0	Primase C terminal 2 (PriCT-2)	N/A
Pfam	UHGV-0387340_10	PF08707	N/A	N/A	Primase C terminal 2 (PriCT-2)	PriCT_2
Pfam	UHGV-0387340_10	PF13481	N/A	N/A	AAA domain	AAA_25
COG	UHGV-0387340_10	COG3598	N/A	N/A	RecA-family ATPase	N/A
structural_annotation	UHGV-0387340_10	PF13481,PF16793,PF08220,MF_00350,MF_00700,NF006606,NF001641,COG3598,COG3285	N/A	N/A	N/A	N/A
KOfam	UHGV-0387340_11	K17677	280.6	0	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	N/A
PHROG	UHGV-0387340_11	phrog_16	204.2	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0387340_11	UniRef90_D1YMB6	724.0	0	Helicase C-terminal domain protein	N/A
eggNOG-mapper	UHGV-0387340_11	742723.HMPREF9477_00926	578.0	0	helicase superfamily c-terminal domain	N/A
PADLOC	UHGV-0387340_11	mREase_IV_00004	99.5	2.4e-29	Type IV methyl-directed restriction enzyme	RM
Pfam	UHGV-0387340_11	PF04851	N/A	N/A	Type III restriction enzyme, res subunit	ResIII
Pfam	UHGV-0387340_11	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-0387340_11	COG1061	N/A	N/A	Superfamily II DNA or RNA helicase	N/A
structural_annotation	UHGV-0387340_11	PF04851,PF16203,MF_01489,NF008521,COG1061	N/A	N/A	N/A	N/A
PHROG	UHGV-0387340_12	phrog_2698	118.3	3.8e-35	N/A	unknown function
UniRef90	UHGV-0387340_12	UniRef90_A0A0R2KFV1	85.9	4.16e-18	N/A	N/A
eggNOG-mapper	UHGV-0387340_12	1231377.C426_1298	88.6	1.16e-19	N/A	N/A
structural_annotation	UHGV-0387340_12	PF05037	N/A	N/A	N/A	N/A
PHROG	UHGV-0387340_13	phrog_124	236.8	0	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0387340_13	UniRef90_UPI00195E1D01	369.0	0	AAA family ATPase	N/A
eggNOG-mapper	UHGV-0387340_13	936580.HMPREF1516_0740	366.0	0	AAA domain	N/A
Pfam	UHGV-0387340_13	PF13479	N/A	N/A	AAA domain	AAA_24
structural_annotation	UHGV-0387340_13	PF13479,MF_00268,TIGR01618,COG0468	N/A	N/A	N/A	N/A
KOfam	UHGV-0387340_14	K03546	45.3	0.00000000000019	sbcC, rad50; DNA repair protein SbcC/Rad50	N/A
PHROG	UHGV-0387340_14	phrog_1499	463.3	0	N/A	unknown function
UniRef90	UHGV-0387340_14	UniRef90_D1YMB3	635.0	0	RecF/RecN/SMC N-terminal domain protein	N/A
eggNOG-mapper	UHGV-0387340_14	679192.HMPREF9013_1319	462.0	0	AAA ATPase domain	N/A
PADLOC	UHGV-0387340_14	AAA_15	44.3	0.0000000000049	N/A	N/A
Pfam	UHGV-0387340_14	PF13476	N/A	N/A	AAA domain	AAA_23
COG	UHGV-0387340_14	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-0387340_14	PF11398,MF_00365,TIGR00634,COG0497	N/A	N/A	N/A	N/A
UniRef90	UHGV-0387340_15	UniRef90_A0A380N5Z7	135.0	1.49e-37	HTH cro/C1-type domain-containing protein	N/A
Pfam	UHGV-0387340_15	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0387340_15	PF01381,NF000090,COG3655	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0387340_16	PF21291,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-0387340_18	phrog_6058	47.5	0.00000000000021	N/A	unknown function
structural_annotation	UHGV-0387340_18	PF09035,NF033787	N/A	N/A	N/A	N/A
KOfam	UHGV-0387340_19	K19232	130.7	6.30024e-42	btaE; hyaluronate-binding autotransporter adhesin	N/A
UniRef90	UHGV-0387340_19	UniRef90_A0A134CAA5	270.0	0	Hep/Hag repeat protein	N/A
eggNOG-mapper	UHGV-0387340_19	1128111.HMPREF0870_01786	215.0	0	Hep Hag repeat protein	N/A
Pfam	UHGV-0387340_19	PF21300	N/A	N/A	Grass antifreeze beta roll	LbR_Ice_bind
Pfam	UHGV-0387340_19	PF05658	N/A	N/A	YadA head domain repeat (2 copies)	YadA_head
Pfam	UHGV-0387340_19	PF05662	N/A	N/A	Coiled stalk of trimeric autotransporter adhesin	YadA_stalk
Pfam	UHGV-0387340_19	PF03895	N/A	N/A	YadA-like membrane anchor domain	YadA_anchor
COG	UHGV-0387340_19	COG5295	N/A	N/A	Autotransporter adhesin	N/A
structural_annotation	UHGV-0387340_19	PF03895,NF033478,COG5295	N/A	N/A	N/A	N/A
UniRef90	UHGV-0387340_21	UniRef90_W1V8T2	110.0	1.11e-30	N/A	N/A
eggNOG-mapper	UHGV-0387340_21	1347392.CCEZ01000005_gene1206	54.3	0.00000000465	N/A	N/A
Pfam	UHGV-0387340_21	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-0387340_21	PF05339,NF041951,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-0387340_22	UniRef90_S3AAF2	193.0	0	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0387340_22	936589.HMPREF1521_1175	150.0	1.4013e-45	sequence-specific DNA binding	N/A
Pfam	UHGV-0387340_22	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0387340_22	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0387340_22	PF12844,NF041951,COG1476	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0387340_23	PF15028,COG5342	N/A	N/A	N/A	N/A
KOfam	UHGV-0387340_24	K14059	117.6	1.8e-34	int; integrase	N/A
PHROG	UHGV-0387340_24	phrog_1	147.9	7.84727e-44	integrase	integration and excision
UniRef90	UHGV-0387340_24	UniRef90_A0A380N5C5	511.0	0	Tyrosine recombinase XerS	N/A
eggNOG-mapper	UHGV-0387340_24	1128111.HMPREF0870_01795	511.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0387340_24	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0387340_24	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0387340_24	PF00589,MF_01808,NF007246,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-0387340_25	phrog_18860	155.0	0	N/A	unknown function
PHROG	UHGV-0387340_26	phrog_5867	138.4	3.39997e-41	endolysin	lysis
UniRef90	UHGV-0387340_26	UniRef90_A0A496P7H7	320.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-0387340_26	1123288.SOV_2c01960	177.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-0387340_26	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
structural_annotation	UHGV-0387340_26	MF_04111	N/A	N/A	N/A	N/A
PHROG	UHGV-0387340_27	phrog_27828	170.2	0	N/A	unknown function
UniRef90	UHGV-0387340_27	UniRef90_F5KZP5	137.0	1.56e-39	Conserved domain protein	N/A
eggNOG-mapper	UHGV-0387340_27	1401067.HMPREF0872_00180	147.0	1.12104e-44	N/A	N/A
PHROG	UHGV-0387340_28	phrog_5132	55.2	3.6e-17	N/A	unknown function
eggNOG-mapper	UHGV-0387340_28	1128111.HMPREF0870_01752	118.0	3.67e-27	N/A	N/A
structural_annotation	UHGV-0387340_28	PF20622	N/A	N/A	N/A	N/A
PHROG	UHGV-0387340_29	phrog_1084	44.2	0.0000000000033	N/A	unknown function
structural_annotation	UHGV-0387340_29	PF17813,NF038186	N/A	N/A	N/A	N/A
KOfam	UHGV-0387340_30	K06882	41.9	0.000000000011	N/A	N/A
PHROG	UHGV-0387340_30	phrog_31	479.9	0	baseplate hub protein Tal	tail
UniRef90	UHGV-0387340_30	UniRef90_A0A2S7YYZ8	2571.0	0	Fibronectin type-III domain-containing protein	N/A
eggNOG-mapper	UHGV-0387340_30	1123489.AUAN01000010_gene347	1272.0	0	cellulase activity	N/A
Pfam	UHGV-0387340_30	PF13550	N/A	N/A	Putative phage tail protein	Phage-tail_3
NCBIFam	UHGV-0387340_30	NF040662.1	N/A	N/A	host specificity factor TipJ family phage tail protein	N/A
COG	UHGV-0387340_30	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0387340_30	PF13550,PF16383,PF00041,PF17936,PF14109,MF_04116,NF040662,NF033506,COG4733	N/A	N/A	N/A	N/A
PHROG	UHGV-0387340_31	phrog_329	56.5	2.8e-16	minor tail protein	tail
UniRef90	UHGV-0387340_31	UniRef90_A0A2S7YYZ6	235.0	0	NlpC/P60 domain-containing protein	N/A
eggNOG-mapper	UHGV-0387340_31	1128111.HMPREF0870_01757	98.6	2.83e-25	cysteine-type peptidase activity	N/A
Pfam	UHGV-0387340_31	PF00877	N/A	N/A	NlpC/P60 family	NLPC_P60
COG	UHGV-0387340_31	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
structural_annotation	UHGV-0387340_31	PF00877,NF008096,COG3234	N/A	N/A	N/A	N/A
PHROG	UHGV-0387340_32	phrog_18	68.1	3.5e-20	minor tail protein	tail
UniRef90	UHGV-0387340_32	UniRef90_A0A380N670	275.0	0	Phage minor tail protein L	N/A
eggNOG-mapper	UHGV-0387340_32	1128111.HMPREF0870_01758	275.0	0	Phage minor tail protein L	N/A
Pfam	UHGV-0387340_32	PF05100	N/A	N/A	Phage minor tail protein L	Phage_tail_L
COG	UHGV-0387340_32	COG4672	N/A	N/A	Phage tail protein	N/A
structural_annotation	UHGV-0387340_32	PF08875,TIGR01600,COG4672	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0387340_33	PF05939,TIGR02217,COG4718	N/A	N/A	N/A	N/A
KOfam	UHGV-0387340_34	K21471	47.8	0.00000000000034	cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]	N/A
PHROG	UHGV-0387340_34	phrog_22443	1897.2	0	N/A	unknown function
UniRef90	UHGV-0387340_34	UniRef90_A0A380N6K7	1433.0	0	Phage-related minor tail protein	N/A
eggNOG-mapper	UHGV-0387340_34	1128111.HMPREF0870_01760	1433.0	0	Putative exonuclease SbcCD, C subunit	N/A
COG	UHGV-0387340_34	COG4913	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0387340_34	PF20155,PF06120,TIGR02338,TIGR01541,COG5281	N/A	N/A	N/A	N/A
PHROG	UHGV-0387340_35	phrog_23549	102.1	2.7e-30	N/A	unknown function
UniRef90	UHGV-0387340_35	UniRef90_F5KZN6	59.7	0.000000000151	Conserved domain protein	N/A
PHROG	UHGV-0387340_36	phrog_27248	135.4	9.99995e-41	N/A	unknown function
PHROG	UHGV-0387340_37	phrog_290	165.1	0	minor tail protein	tail
UniRef90	UHGV-0387340_37	UniRef90_UPI001E4C5382	263.0	0	phage tail tube protein	N/A
eggNOG-mapper	UHGV-0387340_37	1128111.HMPREF0870_01763	554.0	0	N/A	N/A
Pfam	UHGV-0387340_37	PF18906	N/A	N/A	Phage tail tube protein	Phage_tube_2
structural_annotation	UHGV-0387340_37	PF18906,TIGR02241,TIGR02126,COG5437,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-0387340_38	phrog_17431	251.8	0	N/A	unknown function
eggNOG-mapper	UHGV-0387340_38	1128111.HMPREF0870_01764	281.0	0	N/A	N/A
structural_annotation	UHGV-0387340_38	PF20765,COG5003	N/A	N/A	N/A	N/A
UniRef90	UHGV-0387340_39	UniRef90_F5KZN2	311.0	0	Conserved domain protein	N/A
eggNOG-mapper	UHGV-0387340_39	1128111.HMPREF0870_01765	353.0	0	N/A	N/A
structural_annotation	UHGV-0387340_39	PF05069,TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-0387340_40	phrog_27032	189.4	0	N/A	unknown function
structural_annotation	UHGV-0387340_40	PF05354,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0387340_41	phrog_122	80.1	2e-23	head decoration	head and packaging
UniRef90	UHGV-0387340_41	UniRef90_A0A443JDB0	59.7	0.00000000206	N/A	N/A
eggNOG-mapper	UHGV-0387340_41	1005058.UMN179_02397	48.9	0.00000542	N/A	N/A
Pfam	UHGV-0387340_41	PF09956	N/A	N/A	N/A	DUF2190
COG	UHGV-0387340_41	COG5471	N/A	N/A	Predicted phage recombinase, RecA/RadA family	N/A
structural_annotation	UHGV-0387340_41	PF09956,COG5471	N/A	N/A	N/A	N/A
KOfam	UHGV-0387340_42	K06904	46.6	0.0000000000006	N/A	N/A
PHROG	UHGV-0387340_42	phrog_4523	727.8	0	major head and protease protein	head and packaging
UniRef90	UHGV-0387340_42	UniRef90_F5KZM9	1080.0	0	Caudovirus prohead protease	N/A
eggNOG-mapper	UHGV-0387340_42	1128111.HMPREF0870_01768	1025.0	0	Caudovirus prohead protease	N/A
Pfam	UHGV-0387340_42	PF04586	N/A	N/A	Caudovirus prohead serine protease	Peptidase_S78
Pfam	UHGV-0387340_42	PF10124	N/A	N/A	Mu-like prophage major head subunit gpT	Mu-like_gpT
COG	UHGV-0387340_42	COG3087	N/A	N/A	Cell division protein FtsN	N/A
structural_annotation	UHGV-0387340_42	PF19821,PF04586,MF_04119,TIGR04387,TIGR01543,COG3740,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0387340_43	phrog_21	310.8	0	portal protein	head and packaging
UniRef90	UHGV-0387340_43	UniRef90_A0A380N598	854.0	0	Phage portal protein, lambda family	N/A
eggNOG-mapper	UHGV-0387340_43	1128111.HMPREF0870_01769	854.0	0	Phage portal protein, lambda family	N/A
Pfam	UHGV-0387340_43	PF05136	N/A	N/A	Phage portal protein, lambda family	Phage_portal_2
NCBIFam	UHGV-0387340_43	TIGR01539.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0387340_43	COG5511	N/A	N/A	Phage capsid protein	N/A
structural_annotation	UHGV-0387340_43	PF05136,MF_04135,TIGR01539,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0387340_44	phrog_20307	147.8	1.4013e-44	N/A	unknown function
UniRef90	UHGV-0387340_44	UniRef90_F5KZM7	134.0	7.02e-40	Conserved domain protein	N/A
structural_annotation	UHGV-0387340_44	PF19645,COG1382	N/A	N/A	N/A	N/A
KOfam	UHGV-0387340_45	K21512	359.5	0	gpA; terminase, large subunit [EC:3.1.21.4]	N/A
PHROG	UHGV-0387340_45	phrog_15	503.6	0	terminase large subunit	head and packaging
UniRef90	UHGV-0387340_45	UniRef90_A0A380N7T6	1013.0	0	Bacteriophage tail assembly protein	N/A
eggNOG-mapper	UHGV-0387340_45	1128111.HMPREF0870_01771	1013.0	0	Phage terminase large subunit (GpA)	N/A
Pfam	UHGV-0387340_45	PF05876	N/A	N/A	Phage terminase large subunit gpA, ATPase domain	GpA_ATPase
Pfam	UHGV-0387340_45	PF20454	N/A	N/A	Terminase large subunit gpA, endonuclease domain	GpA_nuclease
COG	UHGV-0387340_45	COG5525	N/A	N/A	Phage terminase, large subunit GpA	N/A
HAMAP	UHGV-0387340_45	MF_04144	N/A	N/A	Terminase, large subunit	N/A
structural_annotation	UHGV-0387340_45	PF05876,PF20454,MF_04144,TIGR01547,COG5525	N/A	N/A	N/A	N/A
PHROG	UHGV-0387340_46	phrog_57	67.9	2.1e-19	terminase small subunit	head and packaging
eggNOG-mapper	UHGV-0387340_46	1128111.HMPREF0870_01772	290.0	0	transposase activity	N/A
COG	UHGV-0387340_46	COG4220	N/A	N/A	Phage DNA packaging protein, Nu1 subunit of terminase	N/A
structural_annotation	UHGV-0387340_46	PF07471,COG4220	N/A	N/A	N/A	N/A