UHGV-0411370 (vOTU-150311)

Viral Genome: UHGV-0411370

Genome Information

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Overview
UHGV ID	UHGV-0411370
vOTU ID	vOTU-150311
Representative Genome?	Yes
Source	HuVirDB
Original Genome ID	ERS698784\|NODE_16_length_32191_cov_18.316468
Associated Biosample	SAMEA3323750
Viral Genome Confidence	Confident

Quality Assessment
CheckV Method	AAI-based
CheckV Completeness	84.43 (Medium-quality)
Trimmed?	No
CheckV Viral Markers	16
CheckV Host Markers	1
Recoded?	No

Viral Content
geNomad score	0.9796
Viral Hallmark Genes (geNomad)	14
Plasmid Hallmark Genes (geNomad)	0
ViralVerify Prediction	Virus
ViralVerify Score	40.42
Jumbo Phage?	No

Genome Content
Length (bps)	32,191
GC Content	45.01%
Genetic Code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS Genes	51
CDS Density	93%
Average CDS Length (bps)	586.18
Total tRNA Genes	0
Suppressor tRNA Genes	0

Genome Content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 84.43)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0411370_1	phrog_5070	142.9	1.19951e-42	N/A	unknown function
UniRef90	UHGV-0411370_1	UniRef90_A0A849Y246	87.8	2.53e-20	Polymer-forming cytoskeletal protein (Fragment)	N/A
eggNOG-mapper	UHGV-0411370_1	1201035.KE007212_gene1390	74.7	0.0000000000000386	amine dehydrogenase activity	N/A
Pfam	UHGV-0411370_1	PF18836	N/A	N/A	YdcK Beta solenoid repeat	B_solenoid_ydck
COG	UHGV-0411370_1	COG1044	N/A	N/A	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	N/A
structural_annotation	UHGV-0411370_1	NF040481	N/A	N/A	N/A	N/A
PHROG	UHGV-0411370_3	phrog_22543	40.9	0.000000000037	N/A	unknown function
structural_annotation	UHGV-0411370_4	PF17399	N/A	N/A	N/A	N/A
PHROG	UHGV-0411370_5	phrog_1682	80.4	2.6e-23	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0411370_5	UniRef90_A0A417H6W1	165.0	0	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0411370_5	1235790.C805_00029	134.0	5.15e-39	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	N/A
COG	UHGV-0411370_5	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0411370_5	PF19595,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-0411370_7	phrog_9804	144.1	8.1976e-43	N/A	unknown function
UniRef90	UHGV-0411370_7	UniRef90_A0A0U3FDK9	152.0	1.68156e-43	Loader and inhibitor of phage G40P	N/A
eggNOG-mapper	UHGV-0411370_7	903814.ELI_3550	149.0	2.2701e-43	Loader and inhibitor of phage G40P	N/A
Pfam	UHGV-0411370_7	PF11417	N/A	N/A	Loader and inhibitor of phage G40P	Inhibitor_G39P
structural_annotation	UHGV-0411370_7	PF11417	N/A	N/A	N/A	N/A
PHROG	UHGV-0411370_8	phrog_2149	80.2	3.4e-23	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0411370_8	UniRef90_A0A417QFV0	98.2	7.02e-21	Transcriptional regulator	N/A
eggNOG-mapper	UHGV-0411370_8	1095750.HMPREF9970_1674	169.0	0	N/A	N/A
structural_annotation	UHGV-0411370_8	PF09681,TIGR01714	N/A	N/A	N/A	N/A
PHROG	UHGV-0411370_9	phrog_26484	52.6	0.0000000000000067	DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0411370_9	UniRef90_A0A3E2TJA2	60.8	0.000000000194	PC4 domain-containing protein	N/A
eggNOG-mapper	UHGV-0411370_9	655811.HMPREF0078_0312	62.4	0.00000000000784	Transcriptional Coactivator p15 (PC4)	N/A
COG	UHGV-0411370_9	COG4443	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0411370_9	COG4443	N/A	N/A	N/A	N/A
PHROG	UHGV-0411370_10	phrog_18107	106.0	3.9e-31	N/A	unknown function
eggNOG-mapper	UHGV-0411370_10	1449050.JNLE01000003_gene3912	139.0	4.73e-39	N/A	N/A
Pfam	UHGV-0411370_10	PF05037	N/A	N/A	N/A	DUF669
structural_annotation	UHGV-0411370_10	PF05037	N/A	N/A	N/A	N/A
PHROG	UHGV-0411370_11	phrog_2872	235.5	0	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0411370_11	UniRef90_A0A843H8D6	286.0	0	ATP-binding protein	N/A
eggNOG-mapper	UHGV-0411370_11	1415774.U728_1119	280.0	0	AAA domain	N/A
Pfam	UHGV-0411370_11	PF13479	N/A	N/A	AAA domain	AAA_24
structural_annotation	UHGV-0411370_11	PF13479,MF_00350,TIGR01618,COG0468	N/A	N/A	N/A	N/A
PHROG	UHGV-0411370_12	phrog_253	119.7	1.8e-35	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0411370_12	UniRef90_UPI00082E9619	165.0	0	siphovirus Gp157 family protein	N/A
eggNOG-mapper	UHGV-0411370_12	411470.RUMGNA_02192	142.0	3.17997e-41	Siphovirus Gp157	N/A
Pfam	UHGV-0411370_12	PF05565	N/A	N/A	Siphovirus Gp157	Sipho_Gp157
structural_annotation	UHGV-0411370_12	PF05565	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0411370_15	PF11972,COG3311	N/A	N/A	N/A	N/A
UniRef90	UHGV-0411370_16	UniRef90_A0A6L5X972	51.2	0.000000568	Helix-turn-helix transcriptional regulator	N/A
Pfam	UHGV-0411370_16	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
PHROG	UHGV-0411370_17	phrog_2211	79.7	5e-23	N/A	unknown function
eggNOG-mapper	UHGV-0411370_17	1352230.S6B1N1_9CAUD	115.0	4.43e-32	N/A	N/A
UniRef90	UHGV-0411370_21	UniRef90_UPI001899DB2F	97.1	8.18e-25	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0411370_21	1430331.EP10_02425	56.2	0.00000000153	N/A	N/A
structural_annotation	UHGV-0411370_21	PF05339,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0411370_22	K01356	62.8	7.3e-18	lexA; repressor LexA [EC:3.4.21.88]	N/A
PHROG	UHGV-0411370_22	phrog_4	89.1	5.9e-26	transcriptional repressor	transcription regulation
UniRef90	UHGV-0411370_22	UniRef90_A0A412G448	139.0	1.96e-36	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0411370_22	1507.HMPREF0262_00168	117.0	2.72e-29	Peptidase S24-like	N/A
Pfam	UHGV-0411370_22	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
Pfam	UHGV-0411370_22	PF00717	N/A	N/A	Peptidase S24-like	Peptidase_S24
COG	UHGV-0411370_22	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0411370_22	PF00717,PF01381,MF_00015,NF041951,NF007621,COG2932	N/A	N/A	N/A	N/A
KOfam	UHGV-0411370_23	K07504	446.7	0	K07504; predicted type IV restriction endonuclease	N/A
PHROG	UHGV-0411370_23	phrog_4225	478.4	0	endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0411370_23	UniRef90_UPI0019D22EF5	545.0	0	type I restriction endonuclease	N/A
eggNOG-mapper	UHGV-0411370_23	936375.HMPREF1152_0653	437.0	0	Type I restriction enzyme R protein N terminus (HSDR_N)	N/A
Pfam	UHGV-0411370_23	PF04313	N/A	N/A	Type I restriction enzyme R protein N terminus (HSDR_N)	HSDR_N
COG	UHGV-0411370_23	COG4748	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0411370_23	PF13588,TIGR04256,COG4748	N/A	N/A	N/A	N/A
KOfam	UHGV-0411370_25	K14059	234.2	0	int; integrase	N/A
PHROG	UHGV-0411370_25	phrog_1	212.5	0	integrase	integration and excision
UniRef90	UHGV-0411370_25	UniRef90_A0A7X7EIT8	347.0	0	Tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-0411370_25	1321814.HMPREF9089_00905	231.0	0	Phage integrase, N-terminal SAM-like domain	N/A
Pfam	UHGV-0411370_25	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-0411370_25	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0411370_25	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0411370_25	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
KOfam	UHGV-0411370_26	K08640	101.3	9.4e-30	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	N/A
PHROG	UHGV-0411370_26	phrog_894	103.6	2.2e-30	endolysin	lysis
UniRef90	UHGV-0411370_26	UniRef90_A0A1W2C551	155.0	1.28919e-43	Peptidase M15	N/A
eggNOG-mapper	UHGV-0411370_26	718252.FP2_17010	129.0	2.58e-35	Peptidase M15A	N/A
Pfam	UHGV-0411370_26	PF08291	N/A	N/A	Peptidase M15	Peptidase_M15_3
COG	UHGV-0411370_26	COG3108	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0411370_26	PF08291,COG3108	N/A	N/A	N/A	N/A
PHROG	UHGV-0411370_27	phrog_7940	231.3	0	N/A	unknown function
UniRef90	UHGV-0411370_27	UniRef90_R6QCP8	272.0	0	Prophage antirepressor	N/A
eggNOG-mapper	UHGV-0411370_27	546271.Selsp_1341	259.0	0	BRO family, N-terminal domain	N/A
Pfam	UHGV-0411370_27	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
COG	UHGV-0411370_27	COG3617	N/A	N/A	Prophage antirepressor	N/A
structural_annotation	UHGV-0411370_27	PF10552,PF02498,TIGR02681,COG3617	N/A	N/A	N/A	N/A
PHROG	UHGV-0411370_28	phrog_443	63.4	5.4e-18	holin	lysis
UniRef90	UHGV-0411370_28	UniRef90_UPI0002E2AC7F	92.0	2.8e-23	holin	N/A
eggNOG-mapper	UHGV-0411370_28	1235797.C816_04172	90.1	2.87e-23	Putative lactococcus lactis phage r1t holin	N/A
Pfam	UHGV-0411370_28	PF16945	N/A	N/A	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
structural_annotation	UHGV-0411370_28	PF16945	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0411370_29	PF07328,NF001949	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0411370_31	552398.HMPREF0866_01159	188.0	0	N/A	N/A
Pfam	UHGV-0411370_31	PF02839	N/A	N/A	Carbohydrate-binding module family 5/12	CBM_5_12
Pfam	UHGV-0411370_33	PF03406	N/A	N/A	Phage tail fibre repeat	Phage_fiber_2
PHROG	UHGV-0411370_34	phrog_18725	87.1	9.9e-26	N/A	unknown function
eggNOG-mapper	UHGV-0411370_34	693746.OBV_18220	128.0	7.3e-35	N/A	N/A
structural_annotation	UHGV-0411370_34	PF13754,COG2372	N/A	N/A	N/A	N/A
KOfam	UHGV-0411370_35	K13276	57.7	4.8e-17	bpr; bacillopeptidase F [EC:3.4.21.-]	N/A
PHROG	UHGV-0411370_35	phrog_11157	242.9	0	N/A	unknown function
UniRef90	UHGV-0411370_35	UniRef90_UPI001C10C6DC	363.0	0	Ig-like domain-containing protein	N/A
eggNOG-mapper	UHGV-0411370_35	476272.RUMHYD_02867	283.0	0	N/A	N/A
Pfam	UHGV-0411370_35	PF19077	N/A	N/A	Bacterial Ig-like domain	Big_13
Pfam	UHGV-0411370_35	PF09136	N/A	N/A	Glucodextranase, domain B	Glucodextran_B
COG	UHGV-0411370_35	COG3292	N/A	N/A	Periplasmic ligand-binding sensor domain	N/A
structural_annotation	UHGV-0411370_35	PF09136,PF13205,PF13754,MF_04116,NF032891,COG2372,COG5456	N/A	N/A	N/A	N/A
PHROG	UHGV-0411370_37	phrog_13879	259.8	0	N/A	unknown function
eggNOG-mapper	UHGV-0411370_37	324057.Pjdr2_1554	143.0	3.37e-34	N/A	N/A
structural_annotation	UHGV-0411370_37	PF14594,PF03256,NF033848,COG4379,COG5156	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0411370_38	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
KOfam	UHGV-0411370_39	K20283	60.8	1.4e-18	GOLGA4; golgin subfamily A member 4	N/A
PHROG	UHGV-0411370_39	phrog_23464	227.7	0	N/A	unknown function
eggNOG-mapper	UHGV-0411370_39	33035.JPJF01000023_gene3232	251.0	0	phage tail tape measure protein	N/A
COG	UHGV-0411370_39	COG5412	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0411370_39	PF02050	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0411370_40	PF11836	N/A	N/A	N/A	N/A
PHROG	UHGV-0411370_41	phrog_88	107.8	7.5e-32	major tail protein	tail
UniRef90	UHGV-0411370_41	UniRef90_UPI0018771F27	267.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-0411370_41	33035.JPJF01000039_gene278	119.0	1.35e-30	N/A	N/A
NCBIFam	UHGV-0411370_41	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-0411370_41	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-0411370_42	phrog_5	48.7	0.00000000000017	tail completion or Neck1 protein	connector
UniRef90	UHGV-0411370_42	UniRef90_A0A1C6CIQ6	146.0	5.77055e-42	Phage protein, HK97 gp10 family	N/A
eggNOG-mapper	UHGV-0411370_42	908340.HMPREF9406_2573	113.0	1.11e-29	N/A	N/A
NCBIFam	UHGV-0411370_42	TIGR01725.1	N/A	N/A	HK97-gp10 family putative phage morphogenesis protein	N/A
structural_annotation	UHGV-0411370_42	TIGR01725	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0411370_43	1232446.BAIE02000002_gene829	89.0	1.25e-21	N/A	N/A
structural_annotation	UHGV-0411370_43	PF05657	N/A	N/A	N/A	N/A
PHROG	UHGV-0411370_44	phrog_19734	73.4	3.6e-21	N/A	unknown function
UniRef90	UHGV-0411370_44	UniRef90_A0A316NL63	160.0	0	Head-tail adaptor protein	N/A
eggNOG-mapper	UHGV-0411370_44	999413.HMPREF1094_02006	75.9	2.72e-16	N/A	N/A
structural_annotation	UHGV-0411370_44	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0411370_45	phrog_2550	78.6	4.2e-23	N/A	unknown function
UniRef90	UHGV-0411370_45	UniRef90_UPI0008717716	94.0	6.1e-23	phage head-tail connector protein	N/A
eggNOG-mapper	UHGV-0411370_45	1226322.HMPREF1545_00117	97.4	4.51e-25	N/A	N/A
structural_annotation	UHGV-0411370_45	PF05135,TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-0411370_46	phrog_14753	42.1	0.000000000011	head fiber protein	head and packaging
UniRef90	UHGV-0411370_46	UniRef90_A0A174UM83	117.0	1.17e-32	Head fiber protein	N/A
eggNOG-mapper	UHGV-0411370_46	1232443.BAIA02000078_gene28	68.2	0.00000000000013	domain, Protein	N/A
Pfam	UHGV-0411370_46	PF11133	N/A	N/A	Head fiber protein	Phage_head_fibr
COG	UHGV-0411370_46	COG3266	N/A	N/A	Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain	N/A
PHROG	UHGV-0411370_47	phrog_10	179.5	0	major head protein	head and packaging
UniRef90	UHGV-0411370_47	UniRef90_A0A1Y4R494	494.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0411370_47	1226322.HMPREF1545_00116	342.0	0	phage major capsid protein, HK97 family	N/A
Pfam	UHGV-0411370_47	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
Pfam	UHGV-0411370_47	PF12733	N/A	N/A	Cadherin-like beta sandwich domain	Cadherin-like
NCBIFam	UHGV-0411370_47	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0411370_47	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0411370_47	PF05065,PF12733,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-0411370_48	K06904	158.5	0	N/A	N/A
PHROG	UHGV-0411370_48	phrog_80	184.9	0	head maturation protease	head and packaging
UniRef90	UHGV-0411370_48	UniRef90_A0A316NLC8	296.0	0	HK97 family phage prohead protease	N/A
eggNOG-mapper	UHGV-0411370_48	398512.JQKC01000009_gene450	264.0	0	Phage prohead protease, HK97 family	N/A
Pfam	UHGV-0411370_48	PF04586	N/A	N/A	Caudovirus prohead serine protease	Peptidase_S78
NCBIFam	UHGV-0411370_48	TIGR01543.1	N/A	N/A	HK97 family phage prohead protease	N/A
COG	UHGV-0411370_48	COG3740	N/A	N/A	Phage head maturation protease	N/A
structural_annotation	UHGV-0411370_48	PF04586,TIGR01543,COG3740	N/A	N/A	N/A	N/A
PHROG	UHGV-0411370_49	phrog_12	193.3	0	portal protein	head and packaging
UniRef90	UHGV-0411370_49	UniRef90_A0A1C6CHY3	602.0	0	Phage portal protein, HK97 family	N/A
eggNOG-mapper	UHGV-0411370_49	1121423.JONT01000042_gene1421	486.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-0411370_49	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0411370_49	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0411370_49	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0411370_49	PF04860,MF_04120,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-0411370_50	phrog_9	296.8	0	terminase large subunit	head and packaging
UniRef90	UHGV-0411370_50	UniRef90_A0A1C6CI25	1065.0	0	Phage terminase-like protein, large subunit	N/A
eggNOG-mapper	UHGV-0411370_50	1226322.HMPREF1545_00113	888.0	0	Phage Terminase	N/A
Pfam	UHGV-0411370_50	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0411370_50	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0411370_50	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0411370_50	PF20441,PF03354,MF_04013,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0411370_51	phrog_361	45.1	0.000000000002	terminase small subunit	head and packaging
UniRef90	UHGV-0411370_51	UniRef90_A0A1C6H6I9	142.0	6.11947e-42	Phage terminase, small subunit	N/A
eggNOG-mapper	UHGV-0411370_51	596315.HMPREF0634_0388	55.1	0.0000000257	Phage terminase, small subunit	N/A
Pfam	UHGV-0411370_51	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
structural_annotation	UHGV-0411370_51	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A