UHGV-0776756 (vOTU-062540)

Viral Genome: UHGV-0776756

Genome Information

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Overview
UHGV ID	UHGV-0776756
vOTU ID	vOTU-062540
Representative Genome?	Yes
Source	HuVirDB
Original Genome ID	SRS2267571\|NODE_4_length_37280_cov_16.097945
Associated Biosample	SAMN07211116
Viral Genome Confidence	Confident

Quality Assessment
CheckV Method	AAI-based
CheckV Completeness	93.8 (High-quality)
Trimmed?	No
CheckV Viral Markers	11
CheckV Host Markers	0
Recoded?	No

Viral Content
geNomad score	0.968
Viral Hallmark Genes (geNomad)	5
Plasmid Hallmark Genes (geNomad)	0
ViralVerify Prediction	Virus
ViralVerify Score	40.8
Jumbo Phage?	No

Genome Content
Length (bps)	37,280
GC Content	63.81%
Genetic Code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS Genes	61
CDS Density	87%
Average CDS Length (bps)	532.53
Total tRNA Genes	1
Suppressor tRNA Genes	0

Genome Content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 93.8)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0776756_3	phrog_72	66.4	5.2e-19	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0776756_3	UniRef90_A0A519KT10	137.0	6.7e-39	NinB family protein	N/A
eggNOG-mapper	UHGV-0776756_3	279238.Saro_3025	85.1	4.32e-19	NinB protein	N/A
Pfam	UHGV-0776756_3	PF05772	N/A	N/A	NinB protein	NinB
PHROG	UHGV-0776756_4	phrog_10477	146.1	2.60642e-43	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0776756_4	UniRef90_B4UTX9	86.3	1.36e-16	p091	N/A
eggNOG-mapper	UHGV-0776756_4	10704.B4UTX9_BP163	86.3	2.28e-17	N/A	N/A
KOfam	UHGV-0776756_5	K10873	91.3	1.7e-26	RAD52; DNA repair and recombination protein RAD52	N/A
PHROG	UHGV-0776756_5	phrog_26464	58.5	1.2e-16	DNA repair protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0776756_5	UniRef90_UPI000B994541	196.0	0	RAD52 family DNA repair protein	N/A
eggNOG-mapper	UHGV-0776756_5	221360.RS9917_13778	196.0	0	COG5055 Recombination DNA repair protein (RAD52 pathway)	N/A
Pfam	UHGV-0776756_5	PF04098	N/A	N/A	Rad52/22 family double-strand break repair protein	Rad52_Rad22
COG	UHGV-0776756_5	COG5055	N/A	N/A	Recombinational DNA repair protein (RAD52 pathway)	N/A
KOfam	UHGV-0776756_14	K22300	47.4	0.00000000000038	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
UniRef90	UHGV-0776756_14	UniRef90_A0A2W6RK06	157.0	0	HTH cro/C1-type domain-containing protein	N/A
Pfam	UHGV-0776756_14	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0776756_14	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
PHROG	UHGV-0776756_17	phrog_99	117.9	8.7e-35	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0776756_17	UniRef90_A0A1G3A099	114.0	4.37e-29	AP2/ERF domain-containing protein (Fragment)	N/A
eggNOG-mapper	UHGV-0776756_17	1123508.JH636454_gene5669	97.8	9.25e-24	PFAM Pathogenesis-related transcriptional factor and ERF	N/A
Pfam	UHGV-0776756_17	PF13392	N/A	N/A	HNH endonuclease	HNH_3
Pfam	UHGV-0776756_17	PF00847	N/A	N/A	AP2 domain	AP2
structural_annotation	UHGV-0776756_17	PF10729,PF13392	N/A	N/A	N/A	N/A
PHROG	UHGV-0776756_19	phrog_4212	101.1	1.4e-29	N/A	unknown function
UniRef90	UHGV-0776756_19	UniRef90_A0A246KHY5	151.0	0	UPF0335 protein CD943_03380	N/A
eggNOG-mapper	UHGV-0776756_19	1035191.HMPREF0185_01124	151.0	0	Belongs to the UPF0335 family	N/A
Pfam	UHGV-0776756_19	PF10073	N/A	N/A	GapR-like, DNA-binding domain	GapR_DNA-bd
NCBIFam	UHGV-0776756_19	NF010247.0	N/A	N/A	hypothetical protein	N/A
COG	UHGV-0776756_19	COG3750	N/A	N/A	N/A	N/A
KOfam	UHGV-0776756_22	K03111	179.9	0	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0776756_22	phrog_44	134.9	5.4e-40	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0776756_22	UniRef90_A0A0P0DN91	266.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0776756_22	1229204.AMYY01000002_gene2496	264.0	0	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-0776756_22	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0776756_22	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0776756_22	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0776756_22	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0776756_22	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
KOfam	UHGV-0776756_23	K01160	77.1	3.9e-22	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0776756_23	phrog_34	65.2	1.2e-18	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0776756_23	UniRef90_UPI0006FD9BF6	92.0	1.33e-21	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0776756_23	1121377.KB906398_gene2564	55.8	0.000000101	crossover junction endodeoxyribonuclease activity	N/A
COG	UHGV-0776756_23	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0776756_23	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
KOfam	UHGV-0776756_24	K02313	73.0	4e-21	dnaA; chromosomal replication initiator protein	N/A
UniRef90	UHGV-0776756_24	UniRef90_A0A160HZL8	264.0	0	Chromosomal replication initiator protein DnaA	N/A
eggNOG-mapper	UHGV-0776756_24	1150864.MILUP08_30224	68.2	0.0000000000185	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids	N/A
Pfam	UHGV-0776756_24	PF08299	N/A	N/A	Bacterial dnaA protein helix-turn-helix	Bac_DnaA_C
COG	UHGV-0776756_24	COG0593	N/A	N/A	Chromosomal replication initiation ATPase DnaA	N/A
KOfam	UHGV-0776756_28	K07474	60.1	8.8e-17	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-0776756_28	phrog_51	60.0	5.4e-17	terminase small subunit	head and packaging
UniRef90	UHGV-0776756_28	UniRef90_A0A381ANF2	147.0	6.65617e-43	Terminase small subunit	N/A
eggNOG-mapper	UHGV-0776756_28	78245.Xaut_3431	107.0	4.58e-28	N/A	N/A
Pfam	UHGV-0776756_28	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
structural_annotation	UHGV-0776756_28	PF03592	N/A	N/A	N/A	N/A
KOfam	UHGV-0776756_29	K06909	344.9	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0776756_29	phrog_3717	208.7	0	terminase large subunit	head and packaging
UniRef90	UHGV-0776756_29	UniRef90_UPI001E5CB1A3	466.0	0	terminase large subunit	N/A
eggNOG-mapper	UHGV-0776756_29	1220714.L7TMV1_9CAUD	392.0	0	Pfam:Terminase_3C	N/A
Pfam	UHGV-0776756_29	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-0776756_29	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-0776756_29	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
structural_annotation	UHGV-0776756_29	PF04466,PF20441,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0776756_30	phrog_156	255.4	0	portal protein	head and packaging
UniRef90	UHGV-0776756_30	UniRef90_A0A160HZ16	1186.0	0	Rhodanese domain-containing protein	N/A
eggNOG-mapper	UHGV-0776756_30	1156919.QWC_12538	332.0	0	Tfp pilus assembly protein FimV	N/A
COG	UHGV-0776756_30	COG3170	N/A	N/A	Type IV pilus assembly protein FimV	N/A
structural_annotation	UHGV-0776756_30	PF16510,MF_04120,TIGR01538,COG4383	N/A	N/A	N/A	N/A
PHROG	UHGV-0776756_32	phrog_334	178.0	0	major head protein	head and packaging
UniRef90	UHGV-0776756_32	UniRef90_A0A426GK65	427.0	0	N/A	N/A
eggNOG-mapper	UHGV-0776756_32	1156919.QWC_12548	209.0	0	N/A	N/A
Pfam	UHGV-0776756_32	PF13252	N/A	N/A	N/A	DUF4043
structural_annotation	UHGV-0776756_32	PF13252,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0776756_36	phrog_578	212.5	0	head closure Hc3	connector
UniRef90	UHGV-0776756_36	UniRef90_UPI0018E03BA5	279.0	0	packaged DNA stabilization protein	N/A
eggNOG-mapper	UHGV-0776756_36	717785.HYPMC_1243	73.9	0.0000000000267	N/A	N/A
Pfam	UHGV-0776756_36	PF11134	N/A	N/A	Phage stabilisation protein	Phage_stabilise
structural_annotation	UHGV-0776756_36	PF11134,MF_01282,NF000022,NF038128,COG3292	N/A	N/A	N/A	N/A
PHROG	UHGV-0776756_39	phrog_598	87.3	2e-25	DNA ejection	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0776756_39	UniRef90_A0A7H8VF84	81.6	0.00000000000000112	DNA transfer protein p32	N/A
eggNOG-mapper	UHGV-0776756_39	1636270.A0A0E3GMA9_9CAUD	74.3	0.000000000000236	N/A	N/A
PHROG	UHGV-0776756_41	phrog_5880	77.7	9.8e-23	N/A	unknown function
PHROG	UHGV-0776756_44	phrog_4652	90.8	1.2e-26	N/A	unknown function
eggNOG-mapper	UHGV-0776756_44	397290.C810_01459	228.0	0	N/A	N/A
structural_annotation	UHGV-0776756_44	TIGR02582,COG1604	N/A	N/A	N/A	N/A
PHROG	UHGV-0776756_45	phrog_15946	90.7	1.9e-26	N/A	unknown function
eggNOG-mapper	UHGV-0776756_45	1041147.AUFB01000014_gene330	107.0	2.15e-27	N/A	N/A
PHROG	UHGV-0776756_46	phrog_17420	105.1	6e-31	tail protein	tail
UniRef90	UHGV-0776756_46	UniRef90_A0A5B9N639	120.0	6.28e-25	Head_binding domain-containing protein	N/A
eggNOG-mapper	UHGV-0776756_46	1524881.A0A088CQ58_9CAUD	134.0	1.02e-30	pathogenesis	N/A
Pfam	UHGV-0776756_46	PF12708	N/A	N/A	Pectate lyase superfamily protein	Pectate_lyase_3
KOfam	UHGV-0776756_47	K00570	40.9	0.000000000033	pmtA; phosphatidylethanolamine/phosphatidyl-N-methylethanolamine N-methyltransferase [EC:2.1.1.17 2.1.1.71]	N/A
UniRef90	UHGV-0776756_47	UniRef90_UPI001D09FA22	149.0	1.15999e-41	class I SAM-dependent methyltransferase	N/A
eggNOG-mapper	UHGV-0776756_47	84531.JMTZ01000036_gene478	131.0	1.63e-35	Mycolic acid cyclopropane synthetase	N/A
Pfam	UHGV-0776756_47	PF08241	N/A	N/A	Methyltransferase domain	Methyltransf_11
COG	UHGV-0776756_47	COG0500	N/A	N/A	SAM-dependent methyltransferase	N/A
KOfam	UHGV-0776756_51	K03791	207.9	0	K03791; putative chitinase	N/A
PHROG	UHGV-0776756_51	phrog_181	155.1	0	endolysin	lysis
UniRef90	UHGV-0776756_51	UniRef90_A0A160HWS7	371.0	0	Glycoside hydrolase	N/A
eggNOG-mapper	UHGV-0776756_51	1035191.HMPREF0185_00197	305.0	0	Chitinase class I	N/A
Pfam	UHGV-0776756_51	PF00182	N/A	N/A	Chitinase class I	Glyco_hydro_19
COG	UHGV-0776756_51	COG3179	N/A	N/A	Chitinase, GH19 family	N/A
structural_annotation	UHGV-0776756_51	PF00182,COG3179	N/A	N/A	N/A	N/A
KOfam	UHGV-0776756_53	K14059	75.8	8.2e-22	int; integrase	N/A
PHROG	UHGV-0776756_53	phrog_1	138.9	4.60004e-41	integrase	integration and excision
UniRef90	UHGV-0776756_53	UniRef90_A0A0B4C428	754.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-0776756_53	426117.M446_3983	375.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0776756_53	PF13356	N/A	N/A	Arm DNA-binding domain	Arm-DNA-bind_3
Pfam	UHGV-0776756_53	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0776756_53	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0776756_53	PF00589,PF13356,PF14659,MF_01808,NF007246,COG4974	N/A	N/A	N/A	N/A
UniRef90	UHGV-0776756_54	UniRef90_A0A519LAX5	109.0	2.91e-30	DNA-binding protein	N/A
Pfam	UHGV-0776756_54	PF12728	N/A	N/A	Helix-turn-helix domain	HTH_17
NCBIFam	UHGV-0776756_54	TIGR01764.1	N/A	N/A	excisionase family DNA-binding protein	N/A
PHROG	UHGV-0776756_56	phrog_5429	114.4	1e-33	DNA repair protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0776756_56	UniRef90_UPI001BAF458D	212.0	0	MmcB family DNA repair protein	N/A
eggNOG-mapper	UHGV-0776756_56	913865.DOT_5644	82.4	2.14e-17	N/A	N/A
Pfam	UHGV-0776756_56	PF06319	N/A	N/A	DNA repair protein MmcB-like	MmcB-like
UniRef90	UHGV-0776756_59	UniRef90_UPI0009E1DA79	59.3	0.0000000209	Lar family restriction alleviation protein	N/A