UHGV-1311652 (vOTU-135254)

Viral Genome: UHGV-1311652

Genome Information

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Overview
UHGV ID	UHGV-1311652
vOTU ID	vOTU-135254
Representative Genome?	Yes
Source	GVD
Original Genome ID	Han_2018_ERR1398220_NODE_1495_length_20348_cov_3.921451
Associated Biosample	SAMEA3951734
Viral Genome Confidence	Confident

Quality Assessment
CheckV Method	AAI-based
CheckV Completeness	51.46 (Medium-quality)
Trimmed?	No
CheckV Viral Markers	11
CheckV Host Markers	1
Recoded?	No

Viral Content
geNomad score	0.9805
Viral Hallmark Genes (geNomad)	4
Plasmid Hallmark Genes (geNomad)	0
ViralVerify Prediction	Virus
ViralVerify Score	35.01
Jumbo Phage?	No

Genome Content
Length (bps)	20,348
GC Content	54.69%
Genetic Code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS Genes	29
CDS Density	94%
Average CDS Length (bps)	658.97
Total tRNA Genes	0
Suppressor tRNA Genes	0

Genome Content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 51.46)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1311652_1	phrog_8	64.1	3.5e-18	transcriptional regulator	transcription regulation
UniRef90	UHGV-1311652_1	UniRef90_R8W4H3	117.0	1.78e-32	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-1311652_1	1203606.HMPREF1526_00303	117.0	2.99e-33	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-1311652_1	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1311652_1	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1311652_1	PF12844,MF_00535,NF041951,COG1396	N/A	N/A	N/A	N/A
UniRef90	UHGV-1311652_2	UniRef90_UPI00164D0CB8	129.0	8.58e-38	helix-turn-helix domain-containing protein	N/A
Pfam	UHGV-1311652_2	PF05339	N/A	N/A	N/A	DUF739
PHROG	UHGV-1311652_3	phrog_22529	81.0	1.1e-23	N/A	unknown function
UniRef90	UHGV-1311652_3	UniRef90_UPI00164E6E61	276.0	0	3D domain-containing protein	N/A
eggNOG-mapper	UHGV-1311652_3	693746.OBV_25450	166.0	0	3D domain	N/A
Pfam	UHGV-1311652_3	PF06725	N/A	N/A	3D domain	3D
COG	UHGV-1311652_3	COG3584	N/A	N/A	3D (Asp-Asp-Asp) domain, usually in lytic transglycosylases	N/A
structural_annotation	UHGV-1311652_3	PF06725,MF_02071,NF040675,COG3584	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1311652_4	1232449.BAHV02000016_gene1829	137.0	8.01e-40	N/A	N/A
PHROG	UHGV-1311652_5	phrog_997	101.3	8.5e-30	replication terminator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1311652_5	UniRef90_R6MCS9	112.0	6.79e-30	N/A	N/A
eggNOG-mapper	UHGV-1311652_5	552398.HMPREF0866_01626	133.0	8.24e-39	N/A	N/A
PHROG	UHGV-1311652_6	phrog_1029	154.6	0	N/A	unknown function
eggNOG-mapper	UHGV-1311652_6	552398.HMPREF0866_01625	127.0	2.61e-33	N/A	N/A
structural_annotation	UHGV-1311652_6	PF10065,COG5532	N/A	N/A	N/A	N/A
KOfam	UHGV-1311652_7	K03546	63.7	2.1e-18	sbcC, rad50; DNA repair protein SbcC/Rad50	N/A
PHROG	UHGV-1311652_7	phrog_1499	278.9	0	N/A	unknown function
UniRef90	UHGV-1311652_7	UniRef90_UPI00164CEF4D	833.0	0	AAA family ATPase	N/A
eggNOG-mapper	UHGV-1311652_7	1007096.BAGW01000023_gene155	651.0	0	DNA recombination	N/A
Pfam	UHGV-1311652_7	PF13476	N/A	N/A	AAA domain	AAA_23
COG	UHGV-1311652_7	COG0497	N/A	N/A	DNA repair ATPase RecN	N/A
structural_annotation	UHGV-1311652_7	PF11398,MF_00365,NF008121,COG0497	N/A	N/A	N/A	N/A
PHROG	UHGV-1311652_9	phrog_21613	78.2	1e-22	N/A	unknown function
eggNOG-mapper	UHGV-1311652_9	1007096.BAGW01000023_gene153	286.0	0	N/A	N/A
PHROG	UHGV-1311652_10	phrog_1227	222.4	0	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1311652_10	UniRef90_UPI00164E5A62	548.0	0	PD-(D/E)XK nuclease-like domain-containing protein	N/A
eggNOG-mapper	UHGV-1311652_10	1007096.BAGW01000023_gene152	431.0	0	N/A	N/A
Pfam	UHGV-1311652_10	PF12684	N/A	N/A	N/A	DUF3799
COG	UHGV-1311652_10	COG1074	N/A	N/A	3'-5' helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V)	N/A
structural_annotation	UHGV-1311652_10	PF12684,TIGR01896,COG4343	N/A	N/A	N/A	N/A
KOfam	UHGV-1311652_11	K02316	74.2	2.2e-21	dnaG; DNA primase [EC:2.7.7.101]	N/A
PHROG	UHGV-1311652_11	phrog_11992	113.9	1.7e-33	N/A	unknown function
UniRef90	UHGV-1311652_11	UniRef90_UPI00164D8540	303.0	0	CHC2 zinc finger domain-containing protein	N/A
eggNOG-mapper	UHGV-1311652_11	742738.HMPREF9460_02494	194.0	0	CHC2 zinc finger	N/A
PADLOC	UHGV-1311652_11	drt-cluster192	59.9	6.6e-17	DRT	DRT
Pfam	UHGV-1311652_11	PF01807	N/A	N/A	CHC2 zinc finger	zf-CHC2
COG	UHGV-1311652_11	COG0358	N/A	N/A	DNA primase (bacterial type)	N/A
structural_annotation	UHGV-1311652_11	PF01807	N/A	N/A	N/A	N/A
PHROG	UHGV-1311652_12	phrog_8841	497.5	0	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1311652_12	UniRef90_UPI00164DBC57	1118.0	0	N/A	N/A
eggNOG-mapper	UHGV-1311652_12	742738.HMPREF9460_02495	1026.0	0	N/A	N/A
Pfam	UHGV-1311652_12	PF06048	N/A	N/A	N/A	DUF927
Pfam	UHGV-1311652_12	PF18662	N/A	N/A	Cch helix turn helix domain	HTH_56
COG	UHGV-1311652_12	COG5519	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1311652_12	PF06048,PF18662,MF_00016,NF011296,COG5519	N/A	N/A	N/A	N/A
KOfam	UHGV-1311652_13	K17677	405.6	0	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	N/A
PHROG	UHGV-1311652_13	phrog_16	245.4	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1311652_13	UniRef90_UPI00164D082B	919.0	0	DEAD/DEAH box helicase	N/A
eggNOG-mapper	UHGV-1311652_13	742738.HMPREF9460_02499	809.0	0	helicase superfamily c-terminal domain	N/A
PADLOC	UHGV-1311652_13	mREase_IV_00005	117.0	1.7e-34	Type IV methyl-directed restriction enzyme	RM
Pfam	UHGV-1311652_13	PF04851	N/A	N/A	Type III restriction enzyme, res subunit	ResIII
Pfam	UHGV-1311652_13	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-1311652_13	COG1061	N/A	N/A	Superfamily II DNA or RNA helicase	N/A
structural_annotation	UHGV-1311652_13	PF04851,PF16203,MF_01489,TIGR04095,COG1061	N/A	N/A	N/A	N/A
PHROG	UHGV-1311652_14	phrog_3253	43.7	0.0000000000028	N/A	unknown function
UniRef90	UHGV-1311652_14	UniRef90_UPI0011773349	48.9	0.00000162	resolvase	N/A
PHROG	UHGV-1311652_15	phrog_824	144.9	2.49431e-43	N/A	unknown function
UniRef90	UHGV-1311652_15	UniRef90_UPI00164D35CF	235.0	0	VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-1311652_15	742738.HMPREF9460_02501	153.0	0	VRR_NUC	N/A
Pfam	UHGV-1311652_15	PF08774	N/A	N/A	VRR-NUC domain	VRR_NUC
structural_annotation	UHGV-1311652_15	PF08774	N/A	N/A	N/A	N/A
PHROG	UHGV-1311652_17	phrog_323	50.3	4.5e-29	endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1311652_17	UniRef90_UPI001C01CFF8	499.0	0	SANT/Myb domain-containing protein	N/A
eggNOG-mapper	UHGV-1311652_17	445972.ANACOL_00160	493.0	0	SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains	N/A
Pfam	UHGV-1311652_17	PF13921	N/A	N/A	Myb-like DNA-binding domain	Myb_DNA-bind_6
dbAPIS	UHGV-1311652_17	APIS006	N/A	N/A	Trigger programmed cell death (PCD) by P4 prophage.	N/A
structural_annotation	UHGV-1311652_17	PF11112,NF040595	N/A	N/A	N/A	N/A
UniRef90	UHGV-1311652_19	UniRef90_UPI00195B878B	64.7	0.000000000699	N/A	N/A
UniRef90	UHGV-1311652_20	UniRef90_A0A2V2EAY7	125.0	2.7e-36	N/A	N/A
Pfam	UHGV-1311652_20	PF12677	N/A	N/A	N/A	DUF3797
structural_annotation	UHGV-1311652_20	PF12677,MF_00757	N/A	N/A	N/A	N/A
PHROG	UHGV-1311652_21	phrog_23490	80.6	9.9e-24	N/A	unknown function
UniRef90	UHGV-1311652_21	UniRef90_R6RLI7	85.5	2.39e-20	YoqE	N/A
eggNOG-mapper	UHGV-1311652_21	1122918.KB907248_gene4513	50.4	0.00000378	N/A	N/A
PHROG	UHGV-1311652_22	phrog_36	40.7	0.000000000046	transcriptional regulator	transcription regulation
UniRef90	UHGV-1311652_22	UniRef90_A0A1D9FMP9	59.7	0.0000000018	RNA polymerase subunit sigma-24	N/A
eggNOG-mapper	UHGV-1311652_22	397290.C810_01391	58.9	0.000000000622	N/A	N/A
eggNOG-mapper	UHGV-1311652_23	1235797.C816_02164	81.6	1.49e-19	N/A	N/A
UniRef90	UHGV-1311652_24	UniRef90_UPI001F377C22	120.0	1.53e-33	sigma-70 family RNA polymerase sigma factor	N/A
eggNOG-mapper	UHGV-1311652_24	1226322.HMPREF1545_00599	107.0	3.85e-29	Helix-turn-helix domain	N/A
Pfam	UHGV-1311652_24	PF04545	N/A	N/A	Sigma-70, region 4	Sigma70_r4
NCBIFam	UHGV-1311652_24	TIGR02937.1	N/A	N/A	sigma-70 family RNA polymerase sigma factor	N/A
COG	UHGV-1311652_24	COG1595	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	N/A
structural_annotation	UHGV-1311652_24	PF08281,MF_00245,TIGR02989,COG2739	N/A	N/A	N/A	N/A
PHROG	UHGV-1311652_25	phrog_36	84.6	1.3e-24	transcriptional regulator	transcription regulation
UniRef90	UHGV-1311652_25	UniRef90_A0A6N2R4S8	86.7	4.96e-19	Sigma70_r4 domain-containing protein	N/A
eggNOG-mapper	UHGV-1311652_25	903814.ELI_1292	73.6	0.00000000000000997	N/A	N/A
Pfam	UHGV-1311652_25	PF04545	N/A	N/A	Sigma-70, region 4	Sigma70_r4
PHROG	UHGV-1311652_26	phrog_2412	66.3	5.3e-19	N/A	unknown function
eggNOG-mapper	UHGV-1311652_26	742738.HMPREF9460_02504	137.0	1.99e-40	N/A	N/A
KOfam	UHGV-1311652_27	K06909	383.1	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1311652_27	phrog_3717	154.8	0	terminase large subunit	head and packaging
UniRef90	UHGV-1311652_27	UniRef90_UPI001956A371	643.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-1311652_27	1121344.JHZO01000003_gene977	683.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-1311652_27	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-1311652_27	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-1311652_27	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-1311652_27	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1311652_27	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-1311652_28	phrog_64	307.4	0	portal protein	head and packaging
UniRef90	UHGV-1311652_28	UniRef90_A0A0S2W0K9	573.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-1311652_28	1121344.JHZO01000003_gene976	619.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-1311652_28	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-1311652_28	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-1311652_29	phrog_115	330.8	0	minor head protein	head and packaging
UniRef90	UHGV-1311652_29	UniRef90_A0A212J498	466.0	0	Phage_Mu_F domain-containing protein	N/A
eggNOG-mapper	UHGV-1311652_29	1121344.JHZO01000003_gene975	442.0	0	Phage Mu protein F like protein	N/A
Pfam	UHGV-1311652_29	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
NCBIFam	UHGV-1311652_29	TIGR01641.1	N/A	N/A	minor capsid protein	N/A
COG	UHGV-1311652_29	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1311652_29	PF04233,TIGR01641,COG2357	N/A	N/A	N/A	N/A