UHGV-1327119 (vOTU-012385)

Viral Genome: UHGV-1327119

Genome Information

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Overview
UHGV ID	UHGV-1327119
vOTU ID	vOTU-012385
Representative Genome?	Yes
Source	GVD
Original Genome ID	Han_2018_ERR1398227_NODE_108_length_39993_cov_8.754294
Associated Biosample	N/A
Viral Genome Confidence	Confident

Quality Assessment
CheckV Method	AAI-based
CheckV Completeness	96.95 (High-quality)
Trimmed?	No
CheckV Viral Markers	20
CheckV Host Markers	1
Recoded?	No

Viral Content
geNomad score	0.9803
Viral Hallmark Genes (geNomad)	10
Plasmid Hallmark Genes (geNomad)	0
ViralVerify Prediction	Virus
ViralVerify Score	34.69
Jumbo Phage?	No

Genome Content
Length (bps)	33,969
GC Content	56.72%
Genetic Code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS Genes	50
CDS Density	92%
Average CDS Length (bps)	627.06
Total tRNA Genes	2
Suppressor tRNA Genes	0

Genome Content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 96.95)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-1327119_1	K14059	119.1	6.5e-35	int; integrase	N/A
PHROG	UHGV-1327119_1	phrog_1	106.5	3.1e-31	integrase	integration and excision
UniRef90	UHGV-1327119_1	UniRef90_E2ZNV1	743.0	0	Site-specific recombinase, phage integrase family	N/A
eggNOG-mapper	UHGV-1327119_1	748224.HMPREF9436_03382	743.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-1327119_1	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-1327119_1	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1327119_1	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1327119_1	PF00589,PF14659,MF_01808,NF007246,COG4973	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1327119_2	748224.HMPREF9436_01443	606.0	0	vancomycin resistance protein	N/A
COG	UHGV-1327119_2	COG2720	N/A	N/A	Vancomycin resistance protein YoaR (function unknown), contains peptidoglycan-binding and VanW domains	N/A
KOfam	UHGV-1327119_4	K18830	63.9	3e-18	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-1327119_4	phrog_8	50.2	0.00000000000003	transcriptional regulator	transcription regulation
UniRef90	UHGV-1327119_4	UniRef90_E2ZIF0	248.0	0	DNA-binding helix-turn-helix protein	N/A
eggNOG-mapper	UHGV-1327119_4	748224.HMPREF9436_01444	248.0	0	N/A	N/A
PADLOC	UHGV-1327119_4	retron_type_VI_hth_cluster2_1	45.7	0.0000000000009	N/A	Retron
Pfam	UHGV-1327119_4	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
COG	UHGV-1327119_4	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1327119_4	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-1327119_5	phrog_14088	45.7	0.00000000000066	N/A	unknown function
UniRef90	UHGV-1327119_5	UniRef90_UPI001D07CB3C	50.8	0.000000559	carboxypeptidase	N/A
eggNOG-mapper	UHGV-1327119_5	1235802.C823_04730	51.2	0.0000000589	N/A	N/A
PHROG	UHGV-1327119_6	phrog_1305	57.5	2.3e-16	DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1327119_6	UniRef90_A0A3A6EAL3	166.0	0	N/A	N/A
eggNOG-mapper	UHGV-1327119_6	748224.HMPREF9436_01446	206.0	0	N/A	N/A
PHROG	UHGV-1327119_9	phrog_2232	189.0	0	N/A	unknown function
UniRef90	UHGV-1327119_9	UniRef90_A0A6A7K9D3	164.0	0	N/A	N/A
eggNOG-mapper	UHGV-1327119_9	748224.HMPREF9436_01448	549.0	0	N/A	N/A
Pfam	UHGV-1327119_9	PF14337	N/A	N/A	Abortive infection alpha	Abi_alpha
structural_annotation	UHGV-1327119_9	PF14337,TIGR03899	N/A	N/A	N/A	N/A
PHROG	UHGV-1327119_11	phrog_373	119.3	3.5e-35	anti-repressor	transcription regulation
UniRef90	UHGV-1327119_11	UniRef90_E2ZIF5	438.0	0	Phage regulatory protein, Rha family	N/A
eggNOG-mapper	UHGV-1327119_11	748224.HMPREF9436_01449	438.0	0	Phage regulatory protein Rha (Phage_pRha)	N/A
Pfam	UHGV-1327119_11	PF09669	N/A	N/A	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
NCBIFam	UHGV-1327119_11	TIGR02681.1	N/A	N/A	phage regulatory protein, Rha family	N/A
COG	UHGV-1327119_11	COG3646	N/A	N/A	Phage regulatory protein Rha	N/A
structural_annotation	UHGV-1327119_11	PF09669,TIGR02681,COG3646	N/A	N/A	N/A	N/A
UniRef90	UHGV-1327119_12	UniRef90_UPI00130EBC54	137.0	1.33e-40	N/A	N/A
eggNOG-mapper	UHGV-1327119_12	445972.ANACOL_01800	50.4	0.000000391	N/A	N/A
COG	UHGV-1327119_12	COG3655	N/A	N/A	DNA-binding transcriptional regulator, XRE family	N/A
structural_annotation	UHGV-1327119_12	PF05339,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
UniRef90	UHGV-1327119_15	UniRef90_UPI001D0E65C2	162.0	0	N/A	N/A
structural_annotation	UHGV-1327119_15	PF12957	N/A	N/A	N/A	N/A
PHROG	UHGV-1327119_16	phrog_1733	59.8	2.8e-17	N/A	unknown function
UniRef90	UHGV-1327119_16	UniRef90_UPI001967A828	234.0	0	cell envelope integrity protein TolA	N/A
eggNOG-mapper	UHGV-1327119_16	665956.HMPREF1032_03597	164.0	1.4e-39	DNA binding	N/A
COG	UHGV-1327119_16	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
PHROG	UHGV-1327119_17	phrog_674	150.2	1.54143e-44	N/A	unknown function
UniRef90	UHGV-1327119_17	UniRef90_A0A3A6E846	575.0	0	N/A	N/A
eggNOG-mapper	UHGV-1327119_17	556268.OFAG_00840	88.6	1.5e-17	N/A	N/A
Pfam	UHGV-1327119_17	PF07083	N/A	N/A	N/A	DUF1351
structural_annotation	UHGV-1327119_17	PF07083	N/A	N/A	N/A	N/A
PHROG	UHGV-1327119_18	phrog_2760	181.2	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1327119_18	UniRef90_A0A3A6EAW6	541.0	0	Phage recombination protein Bet	N/A
eggNOG-mapper	UHGV-1327119_18	1235794.C811_01355	156.0	2.87266e-43	RecT family	N/A
Pfam	UHGV-1327119_18	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-1327119_18	TIGR01913.1	N/A	N/A	phage recombination protein Bet	N/A
COG	UHGV-1327119_18	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
structural_annotation	UHGV-1327119_18	PF03837,TIGR01913,COG3723	N/A	N/A	N/A	N/A
UniRef90	UHGV-1327119_19	UniRef90_UPI001CBB85F6	120.0	2.36e-31	single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1327119_19	PF00436,MF_00720,NF004512,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-1327119_20	phrog_2514	79.1	4.9e-23	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1327119_20	UniRef90_A0A291T890	392.0	0	DnaB_2 domain-containing protein	N/A
eggNOG-mapper	UHGV-1327119_20	397291.C804_01603	110.0	5.34e-26	DnaD domain protein	N/A
COG	UHGV-1327119_20	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-1327119_20	PF09681,MF_01819,TIGR01714,TIGR01446,COG3935	N/A	N/A	N/A	N/A
PHROG	UHGV-1327119_21	phrog_843	59.4	3.3e-17	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1327119_21	UniRef90_UPI001159D907	110.0	4.4e-27	Holliday junction resolvase RecU	N/A
eggNOG-mapper	UHGV-1327119_21	929506.CbC4_1203	110.0	1.32e-27	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation	N/A
structural_annotation	UHGV-1327119_21	PF03838,MF_00130,NF002581,COG3331	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1327119_22	PF07374,MF_00245,TIGR01636,COG2739	N/A	N/A	N/A	N/A
PHROG	UHGV-1327119_23	phrog_338	57.2	3.8e-16	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1327119_23	UniRef90_UPI0015F33F36	222.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-1327119_23	748224.HMPREF9436_01465	257.0	0	N/A	N/A
structural_annotation	UHGV-1327119_23	PF01844	N/A	N/A	N/A	N/A
UniRef90	UHGV-1327119_24	UniRef90_R6GFM0	83.6	3.52e-19	Conserved domain protein	N/A
structural_annotation	UHGV-1327119_24	PF19962	N/A	N/A	N/A	N/A
PHROG	UHGV-1327119_25	phrog_9	172.0	0	terminase large subunit	head and packaging
UniRef90	UHGV-1327119_25	UniRef90_UPI001F1A3C47	637.0	0	terminase large subunit	N/A
eggNOG-mapper	UHGV-1327119_25	748224.HMPREF9436_01467	892.0	0	phage terminase, large subunit	N/A
COG	UHGV-1327119_25	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-1327119_25	PF20441,PF03354,MF_04146,NF033889,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-1327119_26	phrog_104	214.9	0	portal protein	head and packaging
UniRef90	UHGV-1327119_26	UniRef90_A0A3E2U200	758.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-1327119_26	748224.HMPREF9436_01468	876.0	0	Phage portal protein, SPP1 Gp6-like	N/A
structural_annotation	UHGV-1327119_26	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-1327119_27	phrog_193	119.3	4.1e-35	head maturation protease	head and packaging
UniRef90	UHGV-1327119_27	UniRef90_A0A6N8H118	350.0	0	CdiA_C domain-containing protein	N/A
eggNOG-mapper	UHGV-1327119_27	748224.HMPREF9436_01469	455.0	0	N/A	N/A
COG	UHGV-1327119_27	COG5529	N/A	N/A	Phage-encoded DNA-binding protein ECs1768, contains HTH and DnaT DNA-binding domains	N/A
structural_annotation	UHGV-1327119_27	PF20344	N/A	N/A	N/A	N/A
PHROG	UHGV-1327119_29	phrog_194	85.7	6.7e-25	head scaffolding protein	head and packaging
UniRef90	UHGV-1327119_29	UniRef90_D4K444	197.0	0	Phage minor structural protein GP20	N/A
eggNOG-mapper	UHGV-1327119_29	748224.HMPREF9436_03336	258.0	0	Phage minor structural protein GP20	N/A
Pfam	UHGV-1327119_29	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-1327119_29	PF06810,MF_02110	N/A	N/A	N/A	N/A
PHROG	UHGV-1327119_30	phrog_10	131.5	7.6e-39	major head protein	head and packaging
UniRef90	UHGV-1327119_30	UniRef90_A0A1Y4TJU9	444.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-1327119_30	748224.HMPREF9436_00690	550.0	0	Phage capsid family	N/A
Pfam	UHGV-1327119_30	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-1327119_30	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-1327119_30	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-1327119_30	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1327119_32	phrog_137	67.8	1.3e-19	head-tail adaptor Ad1	connector
UniRef90	UHGV-1327119_32	UniRef90_E2ZGA8	232.0	0	Phage protein Gp19/Gp15/Gp42	N/A
eggNOG-mapper	UHGV-1327119_32	762211.BSTEL_0628	53.1	0.000000376	Phage protein Gp19/Gp15/Gp42	N/A
structural_annotation	UHGV-1327119_32	PF09355	N/A	N/A	N/A	N/A
PHROG	UHGV-1327119_33	phrog_501	78.1	1.1e-22	head closure Hc1	connector
UniRef90	UHGV-1327119_33	UniRef90_A0A139QHM6	124.0	8.09e-35	Phage-associated protein	N/A
eggNOG-mapper	UHGV-1327119_33	748224.HMPREF9436_00693	219.0	0	N/A	N/A
structural_annotation	UHGV-1327119_33	PF12206,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1327119_34	phrog_387	74.9	5.9e-22	neck protein	connector
eggNOG-mapper	UHGV-1327119_34	748224.HMPREF9436_00694	206.0	0	N/A	N/A
PHROG	UHGV-1327119_35	phrog_123	53.6	0.0000000000000044	tail terminator	connector
UniRef90	UHGV-1327119_35	UniRef90_R6D1D5	79.0	9.81e-17	N/A	N/A
eggNOG-mapper	UHGV-1327119_35	748224.HMPREF9436_00695	195.0	0	N/A	N/A
structural_annotation	UHGV-1327119_35	PF06141	N/A	N/A	N/A	N/A
PHROG	UHGV-1327119_36	phrog_117	157.0	0	major tail protein	tail
UniRef90	UHGV-1327119_36	UniRef90_A0A3E2U249	283.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-1327119_36	748224.HMPREF9436_00696	269.0	0	domain, Protein	N/A
COG	UHGV-1327119_36	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1327119_36	PF04630,TIGR01603,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-1327119_37	phrog_1526	83.3	2.2e-24	N/A	unknown function
eggNOG-mapper	UHGV-1327119_37	1095772.CAHH01000063_gene650	49.3	0.00000254	N/A	N/A
PHROG	UHGV-1327119_38	phrog_1633	55.3	0.0000000000000013	N/A	unknown function
PHROG	UHGV-1327119_39	phrog_6900	244.3	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-1327119_39	748224.HMPREF9436_00699	746.0	0	Phage tail tape measure protein, TP901 family	N/A
COG	UHGV-1327119_39	COG1511	N/A	N/A	N/A	N/A
PHROG	UHGV-1327119_40	phrog_3558	235.3	0	tail protein	tail
UniRef90	UHGV-1327119_40	UniRef90_UPI001C01D15B	885.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-1327119_40	1120933.ATUY01000002_gene164	119.0	3.78e-25	Prophage endopeptidase tail	N/A
Pfam	UHGV-1327119_40	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-1327119_40	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-1327119_40	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-1327119_40	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
COG	UHGV-1327119_42	COG4722	N/A	N/A	Phage-related protein YomH	N/A
eggNOG-mapper	UHGV-1327119_43	1111121.HMPREF1247_1241	63.2	0.0000000015	N/A	N/A
structural_annotation	UHGV-1327119_43	PF05709,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-1327119_44	phrog_9625	49.7	0.000000000000022	N/A	unknown function
eggNOG-mapper	UHGV-1327119_44	748224.HMPREF9436_01407	228.0	0	COG NOG18825 non supervised orthologous group	N/A
structural_annotation	UHGV-1327119_44	MF_04106	N/A	N/A	N/A	N/A
PHROG	UHGV-1327119_45	phrog_29248	61.4	1e-17	N/A	unknown function
PHROG	UHGV-1327119_46	phrog_2310	61.2	9.3e-18	N/A	unknown function
KOfam	UHGV-1327119_47	K08640	98.0	1.5e-28	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	N/A
PHROG	UHGV-1327119_47	phrog_894	112.4	4.8e-33	endolysin	lysis
UniRef90	UHGV-1327119_47	UniRef90_A0A1C5NY12	270.0	0	Zinc D-Ala-D-Ala carboxypeptidase	N/A
eggNOG-mapper	UHGV-1327119_47	748224.HMPREF9436_03320	268.0	0	Peptidase M15	N/A
Pfam	UHGV-1327119_47	PF08291	N/A	N/A	Peptidase M15	Peptidase_M15_3
COG	UHGV-1327119_47	COG3108	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1327119_47	PF05951,COG3108	N/A	N/A	N/A	N/A
PHROG	UHGV-1327119_48	phrog_199	90.7	1.6e-26	holin	lysis
UniRef90	UHGV-1327119_48	UniRef90_A0A2A6Z8T2	261.0	0	Holin	N/A
eggNOG-mapper	UHGV-1327119_48	742740.HMPREF9474_02333	192.0	0	Bacteriophage holin family	N/A
Pfam	UHGV-1327119_48	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-1327119_48	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-1327119_48	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-1327119_48	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
PHROG	UHGV-1327119_49	phrog_13712	79.3	4.8e-23	holin	lysis
eggNOG-mapper	UHGV-1327119_49	1235800.C819_00457	73.2	0.00000000000000904	N/A	N/A
structural_annotation	UHGV-1327119_49	PF09682,TIGR01673	N/A	N/A	N/A	N/A
KOfam	UHGV-1327119_50	K07699	56.3	4.6e-16	spo0A; two-component system, response regulator, stage 0 sporulation protein A	N/A
PHROG	UHGV-1327119_50	phrog_24603	46.4	0.00000000000063	N/A	unknown function
UniRef90	UHGV-1327119_50	UniRef90_E2ZIC9	224.0	0	Spo0A_C domain-containing protein	N/A
eggNOG-mapper	UHGV-1327119_50	1226322.HMPREF1545_01110	77.4	1.75e-16	Sporulation initiation factor Spo0A C terminal	N/A
Pfam	UHGV-1327119_50	PF08769	N/A	N/A	Sporulation initiation factor Spo0A C terminal	Spo0A_C
COG	UHGV-1327119_50	COG2197	N/A	N/A	DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains	N/A
structural_annotation	UHGV-1327119_50	PF08769,TIGR02875	N/A	N/A	N/A	N/A