UHGV-1337846 (vOTU-017693)

Viral Genome: UHGV-1337846

Genome Information

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Overview
UHGV ID	UHGV-1337846
vOTU ID	vOTU-017693
Representative Genome?	Yes
Source	GVD
Original Genome ID	Minot_Diet_SRR5088940_NODE_54_length_42863_cov_7.553868
Associated Biosample	N/A
Viral Genome Confidence	Confident

Quality Assessment
CheckV Method	HMM-based
CheckV Completeness	63.13 (Medium-quality)
Trimmed?	No
CheckV Viral Markers	14
CheckV Host Markers	1
Recoded?	No

Viral Content
geNomad score	0.9724
Viral Hallmark Genes (geNomad)	4
Plasmid Hallmark Genes (geNomad)	0
ViralVerify Prediction	Virus
ViralVerify Score	20.16
Jumbo Phage?	No

Genome Content
Length (bps)	42,863
GC Content	30.87%
Genetic Code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS Genes	59
CDS Density	90%
Average CDS Length (bps)	654.36
Total tRNA Genes	0
Suppressor tRNA Genes	0

Genome Content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 63.13)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-1337846_1	UniRef90_UPI001E532354	78.2	9.81e-16	DNA-packaging protein	N/A
eggNOG-mapper	UHGV-1337846_1	999411.HMPREF1092_03330	82.4	4.21e-18	DNA-packaging protein gp3	N/A
PHROG	UHGV-1337846_6	phrog_2655	45.1	0.0000000000016	excisionase	integration and excision
Pfam	UHGV-1337846_6	PF20038	N/A	N/A	Helix-turn-helix domain	HTH_59
structural_annotation	UHGV-1337846_6	PF20038,TIGR01764	N/A	N/A	N/A	N/A
PHROG	UHGV-1337846_7	phrog_36	51.6	0.000000000000018	transcriptional regulator	transcription regulation
eggNOG-mapper	UHGV-1337846_7	1443125.Z962_12420	53.1	0.00000106	N/A	N/A
PHROG	UHGV-1337846_8	phrog_3490	154.0	0	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1337846_8	UniRef90_A0A336QP04	199.0	0	ERCC4 domain-containing protein	N/A
eggNOG-mapper	UHGV-1337846_8	1345695.CLSA_c30130	205.0	0	ERCC4 domain	N/A
structural_annotation	UHGV-1337846_8	PF02732,NF040956	N/A	N/A	N/A	N/A
PHROG	UHGV-1337846_11	phrog_5164	41.7	0.0000000000083	N/A	unknown function
KOfam	UHGV-1337846_13	K03111	125.2	8.4e-37	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1337846_13	phrog_44	135.6	3.3e-40	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1337846_13	UniRef90_UPI000C079352	202.0	0	single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1337846_13	1414720.CBYM010000010_gene3150	200.0	0	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-1337846_13	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1337846_13	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1337846_13	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1337846_13	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1337846_13	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-1337846_16	phrog_1029	288.3	0	N/A	unknown function
eggNOG-mapper	UHGV-1337846_16	1391647.AVSV01000003_gene1793	228.0	0	N/A	N/A
structural_annotation	UHGV-1337846_16	PF10065,COG5532	N/A	N/A	N/A	N/A
PHROG	UHGV-1337846_17	phrog_997	103.6	1.5e-30	replication terminator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1337846_17	UniRef90_A0A3P6K1V9	106.0	9.97e-27	Replication terminator protein, phage associated	N/A
eggNOG-mapper	UHGV-1337846_17	536232.CLM_2556	102.0	2.98e-26	replication terminator protein, phage associated	N/A
KOfam	UHGV-1337846_18	K02315	130.2	2.1e-38	dnaC; DNA replication protein DnaC	N/A
PHROG	UHGV-1337846_18	phrog_50	122.1	5.3e-36	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1337846_18	UniRef90_A0A355D5R1	179.0	0	AAA family ATPase	N/A
eggNOG-mapper	UHGV-1337846_18	1345695.CLSA_c35690	179.0	0	PFAM IstB-like ATP binding protein	N/A
Pfam	UHGV-1337846_18	PF01695	N/A	N/A	IstB-like ATP binding protein	IstB_IS21
COG	UHGV-1337846_18	COG1484	N/A	N/A	DNA replication protein DnaC	N/A
structural_annotation	UHGV-1337846_18	PF01695,MF_00377,NF005378,COG1484	N/A	N/A	N/A	N/A
PHROG	UHGV-1337846_19	phrog_428	189.4	0	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1337846_19	UniRef90_A0A7H4KVQ7	150.0	3.94998e-41	Phg_2220_C domain-containing protein	N/A
eggNOG-mapper	UHGV-1337846_19	1295642.H839_08149	119.0	9.33e-30	Replication initiation and membrane attachment	N/A
Pfam	UHGV-1337846_19	PF13730	N/A	N/A	Helix-turn-helix domain	HTH_36
Pfam	UHGV-1337846_19	PF09524	N/A	N/A	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
NCBIFam	UHGV-1337846_19	TIGR02220.1	N/A	N/A	phage conserved hypothetical protein, C-terminal domain	N/A
COG	UHGV-1337846_19	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-1337846_19	PF08222,NF033788,COG4901	N/A	N/A	N/A	N/A
KOfam	UHGV-1337846_21	K06167	48.6	0.00000000000011	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	N/A
PHROG	UHGV-1337846_21	phrog_392	163.7	0	metal-dependent hydrolase	other
UniRef90	UHGV-1337846_21	UniRef90_A0A072YLV9	192.0	0	Beta-lactamase	N/A
eggNOG-mapper	UHGV-1337846_21	1443122.Z958_05735	192.0	0	May be involved in the transport of PQQ or its precursor to the periplasm	N/A
Pfam	UHGV-1337846_21	PF00753	N/A	N/A	Metallo-beta-lactamase superfamily	Lactamase_B
COG	UHGV-1337846_21	COG1235	N/A	N/A	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	N/A
structural_annotation	UHGV-1337846_21	PF02112,MF_00653,TIGR03307,COG1234	N/A	N/A	N/A	N/A
KOfam	UHGV-1337846_24	K07455	138.0	1.10001e-40	recT; recombination protein RecT	N/A
PHROG	UHGV-1337846_24	phrog_148	147.9	6.30584e-44	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1337846_24	UniRef90_UPI0016029EDE	234.0	0	recombinase RecT	N/A
eggNOG-mapper	UHGV-1337846_24	1415774.U728_1703	223.0	0	RecT family	N/A
Pfam	UHGV-1337846_24	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-1337846_24	TIGR00616.1	N/A	N/A	recombinase, phage RecT family	N/A
COG	UHGV-1337846_24	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
KOfam	UHGV-1337846_25	K03546	91.7	6.6e-27	sbcC, rad50; DNA repair protein SbcC/Rad50	N/A
PHROG	UHGV-1337846_25	phrog_77	210.8	0	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1337846_25	UniRef90_A0A1V4SW40	277.0	0	Chromosome partition protein Smc	N/A
eggNOG-mapper	UHGV-1337846_25	1391647.AVSV01000022_gene2522	261.0	0	nuclear chromosome segregation	N/A
Pfam	UHGV-1337846_25	PF13476	N/A	N/A	AAA domain	AAA_23
COG	UHGV-1337846_25	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-1337846_25	PF02463,MF_00449,NF041034,COG0419	N/A	N/A	N/A	N/A
Pfam	UHGV-1337846_27	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1337846_27	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-1337846_27	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-1337846_28	UniRef90_A0A6B4MIR6	185.0	0	Recombinase	N/A
eggNOG-mapper	UHGV-1337846_28	1415774.U728_535	179.0	0	Plasmid recombination enzyme	N/A
Pfam	UHGV-1337846_28	PF01076	N/A	N/A	Plasmid recombination enzyme	Mob_Pre
COG	UHGV-1337846_28	COG1193	N/A	N/A	dsDNA-specific endonuclease/ATPase MutS2	N/A
PHROG	UHGV-1337846_29	phrog_559	195.6	0	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1337846_29	UniRef90_UPI001BE900EB	117.0	5.32e-26	N/A	N/A
eggNOG-mapper	UHGV-1337846_29	1541960.KQ78_01268	172.0	0	N/A	N/A
Pfam	UHGV-1337846_29	PF21817	N/A	N/A	CapR homology domain	CapR
structural_annotation	UHGV-1337846_29	PF04480,PF14311,MF_04160,NF007294,COG3727	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1337846_30	1415774.U728_535	143.0	8.54e-40	Plasmid recombination enzyme	N/A
Pfam	UHGV-1337846_30	PF01076	N/A	N/A	Plasmid recombination enzyme	Mob_Pre
COG	UHGV-1337846_30	COG1193	N/A	N/A	dsDNA-specific endonuclease/ATPase MutS2	N/A
KOfam	UHGV-1337846_31	K03205	313.4	0	virD4, lvhD4; type IV secretion system protein VirD4 [EC:7.4.2.8]	N/A
UniRef90	UHGV-1337846_31	UniRef90_A0A846JRN9	564.0	0	Type IV secretory system conjugative DNA transfer family protein	N/A
eggNOG-mapper	UHGV-1337846_31	1415774.U728_534	533.0	0	unidirectional conjugation	N/A
Pfam	UHGV-1337846_31	PF02534	N/A	N/A	Type IV secretory system Conjugative DNA transfer	T4SS-DNA_transf
COG	UHGV-1337846_31	COG3505	N/A	N/A	Type IV secretory pathway, VirD4 component, TraG/TraD family ATPase	N/A
structural_annotation	UHGV-1337846_31	PF02534,NF010472,COG3505	N/A	N/A	N/A	N/A
KOfam	UHGV-1337846_40	K18640	113.8	1.9e-33	parM, stbA; plasmid segregation protein ParM	N/A
PHROG	UHGV-1337846_40	phrog_691	124.3	8.6e-37	partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1337846_40	UniRef90_UPI00196715AD	262.0	0	ParM/StbA family protein	N/A
eggNOG-mapper	UHGV-1337846_40	536233.CLO_0569	144.0	2.01e-38	cell division	N/A
Pfam	UHGV-1337846_40	PF17989	N/A	N/A	Actin like proteins N terminal domain	ALP_N
COG	UHGV-1337846_40	COG0849	N/A	N/A	Cell division ATPase FtsA	N/A
structural_annotation	UHGV-1337846_40	PF06723,MF_02207,NF010498,COG1077	N/A	N/A	N/A	N/A
KOfam	UHGV-1337846_41	K01448	104.1	1.7e-30	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-1337846_41	phrog_435	165.5	0	endolysin	lysis
UniRef90	UHGV-1337846_41	UniRef90_UPI0006C0CFD4	367.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-1337846_41	1280689.AUJC01000011_gene1538	364.0	0	Cell wall hydrolase autolysin	N/A
Pfam	UHGV-1337846_41	PF01520	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_3
COG	UHGV-1337846_41	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-1337846_41	PF01520,PF05036,MF_02022,MF_00562,TIGR02883,COG0860,COG3147	N/A	N/A	N/A	N/A
PHROG	UHGV-1337846_42	phrog_20258	45.0	0.0000000000016	N/A	unknown function
eggNOG-mapper	UHGV-1337846_42	1280689.AUJC01000011_gene1537	117.0	8.15e-33	N/A	N/A
PHROG	UHGV-1337846_44	phrog_6651	67.2	1.5e-19	internal virion protein	head and packaging
UniRef90	UHGV-1337846_44	UniRef90_A0A6M3ISU9	163.0	5.43e-37	Putative structural protein	N/A
eggNOG-mapper	UHGV-1337846_44	1268072.PSAB_06120	178.0	2.84043e-42	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis	N/A
COG	UHGV-1337846_44	COG0503	N/A	N/A	Adenine/guanine phosphoribosyltransferase or related PRPP-binding protein	N/A
PHROG	UHGV-1337846_46	phrog_24267	140.4	1.40004e-41	N/A	unknown function
UniRef90	UHGV-1337846_46	UniRef90_R5LPM8	115.0	6.7e-30	Putative truncated prophage LambdaSa1 minor structural protein	N/A
eggNOG-mapper	UHGV-1337846_46	764299.STRIC_1424	129.0	1.74e-34	tail collar domain protein	N/A
COG	UHGV-1337846_46	COG4675	N/A	N/A	Phage tail collar domain	N/A
PHROG	UHGV-1337846_47	phrog_5240	75.5	2.4e-22	tail fiber protein	tail
UniRef90	UHGV-1337846_47	UniRef90_UPI00189D6502	1147.0	0	SGNH/GDSL hydrolase family protein	N/A
Pfam	UHGV-1337846_47	PF13472	N/A	N/A	GDSL-like Lipase/Acylhydrolase family	Lipase_GDSL_2
COG	UHGV-1337846_47	COG2755	N/A	N/A	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	N/A
eggNOG-mapper	UHGV-1337846_48	1280689.AUJC01000011_gene1533	77.0	0.0000000000000144	N/A	N/A
COG	UHGV-1337846_48	COG2755	N/A	N/A	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	N/A
PHROG	UHGV-1337846_49	phrog_3287	197.1	0	virion structural protein	head and packaging
UniRef90	UHGV-1337846_49	UniRef90_UPI001F43F8A6	417.0	0	N/A	N/A
eggNOG-mapper	UHGV-1337846_49	1408437.JNJN01000001_gene1713	239.0	0	N/A	N/A
structural_annotation	UHGV-1337846_49	PF11134,MF_03027,NF010237,TIGR03511,COG2319	N/A	N/A	N/A	N/A
PHROG	UHGV-1337846_50	phrog_13046	93.8	1.8e-27	N/A	unknown function
structural_annotation	UHGV-1337846_50	PF20387	N/A	N/A	N/A	N/A
PHROG	UHGV-1337846_52	phrog_1357	263.6	0	major head protein	head and packaging
UniRef90	UHGV-1337846_52	UniRef90_UPI001EDF36C4	322.0	0	N4-gp56 family major capsid protein	N/A
eggNOG-mapper	UHGV-1337846_52	696281.Desru_1092	346.0	0	N/A	N/A
Pfam	UHGV-1337846_52	PF13252	N/A	N/A	N/A	DUF4043
NCBIFam	UHGV-1337846_52	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-1337846_52	PF13252,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1337846_54	phrog_156	177.5	0	portal protein	head and packaging
UniRef90	UHGV-1337846_54	UniRef90_A0A0C9LYG8	475.0	0	Head-to-tail joining protein	N/A
eggNOG-mapper	UHGV-1337846_54	1121091.AUMP01000003_gene2583	462.0	0	N/A	N/A
structural_annotation	UHGV-1337846_54	PF16510,MF_04120,TIGR01538,COG5518	N/A	N/A	N/A	N/A
PHROG	UHGV-1337846_56	phrog_38	236.0	0	terminase large subunit	head and packaging
UniRef90	UHGV-1337846_56	UniRef90_UPI000949A396	332.0	0	phage terminase large subunit	N/A
eggNOG-mapper	UHGV-1337846_56	755731.Clo1100_2438	303.0	0	TIGRFAM Phage	N/A
Pfam	UHGV-1337846_56	PF17289	N/A	N/A	Terminase RNaseH-like domain	Terminase_6C
NCBIFam	UHGV-1337846_56	TIGR01630.1	N/A	N/A	phage terminase large subunit	N/A
COG	UHGV-1337846_56	COG5362	N/A	N/A	Phage terminase large subunit	N/A
PHROG	UHGV-1337846_57	phrog_59	132.8	7.1e-40	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1337846_57	UniRef90_UPI00188F74C3	153.0	5.74532e-44	NUMOD4 motif-containing HNH endonuclease	N/A
eggNOG-mapper	UHGV-1337846_57	1229751.R9QM99_9CAUD	104.0	1.34e-25	HNH endonuclease	N/A
PADLOC	UHGV-1337846_57	HEase_00016	101.2	2e-32	homing endonuclease	RM
Pfam	UHGV-1337846_57	PF07463	N/A	N/A	NUMOD4 motif	NUMOD4
Pfam	UHGV-1337846_57	PF13392	N/A	N/A	HNH endonuclease	HNH_3
structural_annotation	UHGV-1337846_57	PF07463,PF07453,TIGR01453	N/A	N/A	N/A	N/A
PHROG	UHGV-1337846_58	phrog_36964	140.3	9.10003e-42	terminase large subunit	head and packaging
UniRef90	UHGV-1337846_58	UniRef90_A0A1D7Y001	426.0	0	Terminase	N/A
eggNOG-mapper	UHGV-1337846_58	314275.MADE_1014625	313.0	0	Terminase-like family	N/A
Pfam	UHGV-1337846_58	PF14528	N/A	N/A	LAGLIDADG-like domain	LAGLIDADG_3
COG	UHGV-1337846_58	COG3780	N/A	N/A	DNA endonuclease related to intein-encoded endonucleases	N/A
KOfam	UHGV-1337846_59	K06400	207.8	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-1337846_59	phrog_95	208.2	0	integrase	integration and excision
UniRef90	UHGV-1337846_59	UniRef90_A0A353QSX4	275.0	0	Recombinase family protein	N/A
eggNOG-mapper	UHGV-1337846_59	1499683.CCFF01000005_gene63	272.0	0	resolvase	N/A
Pfam	UHGV-1337846_59	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-1337846_59	PF07508	N/A	N/A	Recombinase	Recombinase
COG	UHGV-1337846_59	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-1337846_59	PF00239,PF07508,NF041201,COG1961	N/A	N/A	N/A	N/A