UHGV-1338885 (vOTU-092344)

Viral Genome: UHGV-1338885

Genome Information

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Overview
UHGV ID	UHGV-1338885
vOTU ID	vOTU-092344
Representative Genome?	Yes
Source	GVD
Original Genome ID	Ma_2019_SRR413613_NODE_638_length_31377_cov_4.652129
Associated Biosample	SAMN00791958
Viral Genome Confidence	Confident

Quality Assessment
CheckV Method	AAI-based
CheckV Completeness	76.2 (Medium-quality)
Trimmed?	No
CheckV Viral Markers	5
CheckV Host Markers	0
Recoded?	No

Viral Content
geNomad score	0.9815
Viral Hallmark Genes (geNomad)	7
Plasmid Hallmark Genes (geNomad)	0
ViralVerify Prediction	Virus
ViralVerify Score	16.3
Jumbo Phage?	No

Genome Content
Length (bps)	29,316
GC Content	61.03%
Genetic Code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS Genes	49
CDS Density	90%
Average CDS Length (bps)	535.84
Total tRNA Genes	0
Suppressor tRNA Genes	0

Genome Content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 76.2)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-1338885_1	K14059	222.7	0	int; integrase	N/A
PHROG	UHGV-1338885_1	phrog_1	197.3	0	integrase	integration and excision
UniRef90	UHGV-1338885_1	UniRef90_A0A212JT52	411.0	0	Putative Integrase family protein	N/A
eggNOG-mapper	UHGV-1338885_1	1507.HMPREF0262_00307	204.0	0	Phage integrase family	N/A
Pfam	UHGV-1338885_1	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-1338885_1	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1338885_1	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1338885_1	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
KOfam	UHGV-1338885_2	K07448	44.7	0.0000000000018	mrr; restriction system protein	N/A
UniRef90	UHGV-1338885_2	UniRef90_R6IC10	300.0	0	SWIM-type domain-containing protein	N/A
Pfam	UHGV-1338885_2	PF04471	N/A	N/A	Restriction endonuclease	Mrr_cat
KOfam	UHGV-1338885_3	K07729	57.9	2.2e-16	K07729; putative transcriptional regulator	N/A
PHROG	UHGV-1338885_3	phrog_8	44.2	0.0000000000039	transcriptional regulator	transcription regulation
UniRef90	UHGV-1338885_3	UniRef90_R5AVU4	117.0	2.25e-33	CI-like repressor	N/A
eggNOG-mapper	UHGV-1338885_3	1220551.SCHR_06575	50.1	0.00000021	transcriptional	N/A
Pfam	UHGV-1338885_3	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1338885_3	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-1338885_3	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-1338885_5	K18830	65.4	1.4e-18	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-1338885_5	phrog_8	51.6	0.000000000000012	transcriptional regulator	transcription regulation
UniRef90	UHGV-1338885_5	UniRef90_UPI001899F946	139.0	4.63999e-40	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1338885_5	445972.ANACOL_03315	129.0	4.63e-37	N/A	N/A
Pfam	UHGV-1338885_5	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1338885_5	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1338885_5	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-1338885_7	phrog_7566	107.6	5.1e-32	N/A	unknown function
UniRef90	UHGV-1338885_7	UniRef90_A0A8D9UHC0	129.0	6.19e-37	Recombination enhancement function protein nuclease	N/A
eggNOG-mapper	UHGV-1338885_7	693746.OBV_24070	126.0	4.55e-36	N/A	N/A
structural_annotation	UHGV-1338885_8	PF12728,NF040990	N/A	N/A	N/A	N/A
KOfam	UHGV-1338885_9	K06284	111.8	4.2e-33	abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes	N/A
PHROG	UHGV-1338885_9	phrog_4681	104.0	5e-31	antitoxin from a toxin-antitoxin system	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1338885_9	UniRef90_R5B3P3	173.0	0	Transcriptional regulator AbrB family	N/A
eggNOG-mapper	UHGV-1338885_9	1382304.JNIL01000001_gene2139	105.0	1.34e-28	AbrB family transcriptional regulator	N/A
Pfam	UHGV-1338885_9	PF04014	N/A	N/A	Antidote-toxin recognition MazE, bacterial antitoxin	MazE_antitoxin
NCBIFam	UHGV-1338885_9	TIGR01439.1	N/A	N/A	transcriptional regulator, AbrB family	N/A
COG	UHGV-1338885_9	COG2002	N/A	N/A	Bifunctional DNA-binding transcriptional regulator of stationary/sporulation/toxin gene expression and antitoxin component of the YhaV-PrlF toxin-antitoxin module	N/A
structural_annotation	UHGV-1338885_9	PF15937,TIGR01439,NF004424,COG2002	N/A	N/A	N/A	N/A
Pfam	UHGV-1338885_12	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
eggNOG-mapper	UHGV-1338885_13	1232449.BAHV02000016_gene1829	133.0	3.8e-38	N/A	N/A
PHROG	UHGV-1338885_14	phrog_38338	66.6	4.5e-19	N/A	unknown function
UniRef90	UHGV-1338885_14	UniRef90_UPI00189B3582	63.5	0.000000000296	Cas9 inhibitor AcrIIA9 family protein	N/A
eggNOG-mapper	UHGV-1338885_14	693746.OBV_25410	94.4	2.05e-23	N/A	N/A
PHROG	UHGV-1338885_15	phrog_8470	456.3	0	N/A	unknown function
UniRef90	UHGV-1338885_15	UniRef90_UPI001C1063FF	268.0	0	PcfJ domain-containing protein	N/A
eggNOG-mapper	UHGV-1338885_15	1378168.N510_01842	223.0	0	PcfJ-like protein	N/A
Pfam	UHGV-1338885_15	PF14284	N/A	N/A	PcfJ-like protein	PcfJ
structural_annotation	UHGV-1338885_15	PF14284	N/A	N/A	N/A	N/A
PHROG	UHGV-1338885_16	phrog_15609	385.2	0	N/A	unknown function
UniRef90	UHGV-1338885_16	UniRef90_UPI00165E8F71	125.0	3.85e-30	N/A	N/A
eggNOG-mapper	UHGV-1338885_16	1378168.N510_01841	120.0	4.57e-28	N/A	N/A
Pfam	UHGV-1338885_16	PF11300	N/A	N/A	N/A	DUF3102
COG	UHGV-1338885_16	COG2433	N/A	N/A	Possible nuclease of RNase H fold, RuvC/YqgF family	N/A
structural_annotation	UHGV-1338885_16	PF11300,PF07321,NF038070	N/A	N/A	N/A	N/A
PHROG	UHGV-1338885_17	phrog_2245	106.4	2.3e-31	nucleoside triphosphate pyrophosphohydrolase	other
UniRef90	UHGV-1338885_17	UniRef90_A0A4U9RLZ8	92.8	9.36e-23	N/A	N/A
eggNOG-mapper	UHGV-1338885_17	293826.Amet_2596	98.6	5.5e-25	N/A	N/A
structural_annotation	UHGV-1338885_17	PF12643,MF_01020,TIGR03188	N/A	N/A	N/A	N/A
COG	UHGV-1338885_19	COG0863	N/A	N/A	DNA modification methylase	N/A
KOfam	UHGV-1338885_20	K00571	79.4	5.5e-23	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-1338885_20	phrog_67	78.7	8.8e-23	DNA methyltransferase	other
UniRef90	UHGV-1338885_20	UniRef90_A0A2N2CPV8	258.0	0	Methyltransferase (Fragment)	N/A
eggNOG-mapper	UHGV-1338885_20	411154.GFO_2469	169.0	0	DNA methylase	N/A
PADLOC	UHGV-1338885_20	MTase_II_00172	119.0	5.6e-35	Type II methyltransferase	RM
Pfam	UHGV-1338885_20	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-1338885_20	COG0863	N/A	N/A	DNA modification methylase	N/A
PHROG	UHGV-1338885_25	phrog_355	73.4	2.9e-21	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1338885_25	UniRef90_R5AT00	233.0	0	Gp57	N/A
eggNOG-mapper	UHGV-1338885_25	40631.O64365_BPN15	80.9	2.77e-18	N/A	N/A
Pfam	UHGV-1338885_25	PF14359	N/A	N/A	N/A	DUF4406
PHROG	UHGV-1338885_28	phrog_3584	190.4	0	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1338885_28	1226322.HMPREF1545_03841	89.7	1.69e-18	N/A	N/A
structural_annotation	UHGV-1338885_28	PF01446,NF041486	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1338885_29	1226322.HMPREF1545_00288	71.2	0.00000000000000702	N/A	N/A
KOfam	UHGV-1338885_30	K07474	79.1	1.1e-22	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-1338885_30	phrog_51	80.6	2.2e-23	terminase small subunit	head and packaging
UniRef90	UHGV-1338885_30	UniRef90_R5AT05	329.0	0	Terminase small subunit family protein	N/A
eggNOG-mapper	UHGV-1338885_30	1268072.PSAB_06050	74.7	0.00000000000000817	terminase small subunit	N/A
Pfam	UHGV-1338885_30	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-1338885_30	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-1338885_30	PF03592,COG3728	N/A	N/A	N/A	N/A
PHROG	UHGV-1338885_31	phrog_2	94.7	1.3e-27	terminase large subunit	head and packaging
UniRef90	UHGV-1338885_31	UniRef90_R5AVW7	1114.0	0	Putative terminase large subunit	N/A
eggNOG-mapper	UHGV-1338885_31	693746.OBV_23980	601.0	0	phage Terminase large subunit	N/A
COG	UHGV-1338885_31	COG4373	N/A	N/A	Mu-like prophage FluMu protein gp28	N/A
structural_annotation	UHGV-1338885_31	PF03237,PF17289,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1338885_34	COG5471	N/A	N/A	N/A	N/A
PHROG	UHGV-1338885_35	phrog_371	53.9	0.0000000000000027	major head protein	head and packaging
UniRef90	UHGV-1338885_35	UniRef90_R7FUR2	244.0	0	Mu-like prophage major head subunit gpt-like protein	N/A
Pfam	UHGV-1338885_35	PF10124	N/A	N/A	Mu-like prophage major head subunit gpT	Mu-like_gpT
structural_annotation	UHGV-1338885_35	PF19774,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1338885_37	phrog_13046	252.9	0	N/A	unknown function
structural_annotation	UHGV-1338885_37	PF20387	N/A	N/A	N/A	N/A
PHROG	UHGV-1338885_38	phrog_3287	235.5	0	virion structural protein	head and packaging
eggNOG-mapper	UHGV-1338885_38	1408437.JNJN01000002_gene1390	394.0	0	N/A	N/A
structural_annotation	UHGV-1338885_38	PF11134,MF_01282,TIGR03300,COG5276	N/A	N/A	N/A	N/A
PHROG	UHGV-1338885_39	phrog_156	119.0	3.1e-35	portal protein	head and packaging
structural_annotation	UHGV-1338885_39	PF12236,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-1338885_40	phrog_21412	54.9	4.4e-16	tail fiber protein	tail
structural_annotation	UHGV-1338885_40	PF04582	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1338885_41	PF10651,NF038186	N/A	N/A	N/A	N/A
PHROG	UHGV-1338885_43	phrog_38190	70.2	1.7e-22	N/A	unknown function
eggNOG-mapper	UHGV-1338885_43	762211.BSTEL_0610	66.2	0.0000000000762	N/A	N/A
PHROG	UHGV-1338885_44	phrog_2712	43.4	0.0000000000046	tail fiber protein	tail
KOfam	UHGV-1338885_45	K24358	44.2	0.0000000000019	COL26A, EMID2; collagen type XXVI alpha (EMI domain-containing protein 2)	N/A
PHROG	UHGV-1338885_45	phrog_35286	41.4	0.0000000000089	N/A	unknown function
Pfam	UHGV-1338885_45	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
eggNOG-mapper	UHGV-1338885_48	1235797.C816_04174	151.0	2.8026e-45	N/A	N/A
structural_annotation	UHGV-1338885_48	PF14600	N/A	N/A	N/A	N/A
KOfam	UHGV-1338885_49	K01447	109.4	4.4e-32	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-1338885_49	phrog_9611	114.6	9.9e-34	endolysin	lysis
UniRef90	UHGV-1338885_49	UniRef90_R5B1Z3	307.0	0	N-acetylmuramoyl-L-alanine amidase domain-containing protein	N/A
eggNOG-mapper	UHGV-1338885_49	97138.C820_00251	166.0	0	Ami_2	N/A
Pfam	UHGV-1338885_49	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
COG	UHGV-1338885_49	COG3023	N/A	N/A	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	N/A
structural_annotation	UHGV-1338885_49	PF01510,MF_04111,NF008758,COG5632	N/A	N/A	N/A	N/A