UHGV-1367474 (vOTU-056086)

Viral Genome: UHGV-1367474

Genome Information

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Overview
UHGV ID	UHGV-1367474
vOTU ID	vOTU-056086
Representative Genome?	Yes
Source	MGV
Original Genome ID	MGV-GENOME-0359223
Associated Biosample	N/A
Viral Genome Confidence	Confident

Quality Assessment
CheckV Method	DTR
CheckV Completeness	100 (Complete)
Trimmed?	No
CheckV Viral Markers	14
CheckV Host Markers	0
Recoded?	No

Viral Content
geNomad score	0.97
Viral Hallmark Genes (geNomad)	8
Plasmid Hallmark Genes (geNomad)	0
ViralVerify Prediction	Virus
ViralVerify Score	15.07
Jumbo Phage?	No

Genome Content
Length (bps)	89,573
GC Content	54.41%
Genetic Code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS Genes	117
CDS Density	93%
Average CDS Length (bps)	713.69
Total tRNA Genes	0
Suppressor tRNA Genes	0

Genome Content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
eggNOG-mapper	UHGV-1367474_2	887898.HMPREF0551_2239	362.0	0	amine dehydrogenase activity	N/A
Pfam	UHGV-1367474_2	PF13229	N/A	N/A	Right handed beta helix region	Beta_helix
COG	UHGV-1367474_2	COG3391	N/A	N/A	DNA-binding beta-propeller fold protein YncE	N/A
KOfam	UHGV-1367474_8	K03111	84.8	1.6e-24	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1367474_8	phrog_44	70.9	2.5e-20	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1367474_8	UniRef90_A0A6N8UFU4	84.0	2.16e-18	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1367474_8	1442599.JAAN01000030_gene2109	68.2	0.00000000000118	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-1367474_8	PF00436	N/A	N/A	Single-strand binding protein family	SSB
COG	UHGV-1367474_8	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1367474_8	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-1367474_9	phrog_10477	69.6	5.4e-20	exonuclease	DNA, RNA and nucleotide metabolism
PHROG	UHGV-1367474_10	phrog_298	90.8	3.4e-27	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1367474_10	UniRef90_UPI001ABE80F6	129.0	9.99e-34	PD-(D/E)XK nuclease family protein	N/A
eggNOG-mapper	UHGV-1367474_10	754027.HMPREF9554_00708	58.5	0.000000315	N/A	N/A
structural_annotation	UHGV-1367474_10	PF12705,MF_03030,TIGR00372,COG2887	N/A	N/A	N/A	N/A
PHROG	UHGV-1367474_11	phrog_1120	156.0	0	tail tube protein	tail
eggNOG-mapper	UHGV-1367474_11	1217710.F969_00592	199.0	0	N/A	N/A
structural_annotation	UHGV-1367474_11	PF06841,TIGR02241,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-1367474_12	phrog_5551	79.6	3.3e-23	N/A	unknown function
eggNOG-mapper	UHGV-1367474_12	261292.Nit79A3_1458	75.5	0.0000000000000019	N/A	N/A
PHROG	UHGV-1367474_13	phrog_1390	97.8	9.7e-29	tail protein	tail
eggNOG-mapper	UHGV-1367474_13	261292.Nit79A3_1459	162.0	1.4013e-45	N/A	N/A
UniRef90	UHGV-1367474_14	UniRef90_A0A0B6S1Y0	121.0	7.34e-31	Phage baseplate assembly protein V	N/A
eggNOG-mapper	UHGV-1367474_14	261292.Nit79A3_1460	109.0	1.39e-27	N/A	N/A
Pfam	UHGV-1367474_14	PF20093	N/A	N/A	N/A	DUF6484
Pfam	UHGV-1367474_14	PF18715	N/A	N/A	Phage spike trimer	Phage_spike
PHROG	UHGV-1367474_16	phrog_8446	49.9	9.2e-21	HNH endonuclease	DNA, RNA and nucleotide metabolism
Pfam	UHGV-1367474_16	PF13384	N/A	N/A	Homeodomain-like domain	HTH_23
Pfam	UHGV-1367474_16	PF13412	N/A	N/A	Winged helix-turn-helix DNA-binding	HTH_24
Pfam	UHGV-1367474_17	PF13384	N/A	N/A	Homeodomain-like domain	HTH_23
PHROG	UHGV-1367474_20	phrog_17775	112.2	3.6e-33	N/A	unknown function
UniRef90	UHGV-1367474_20	UniRef90_A0A261QYV4	110.0	1.04e-29	N/A	N/A
eggNOG-mapper	UHGV-1367474_20	1217705.F900_00002	98.6	6.45e-26	N/A	N/A
Pfam	UHGV-1367474_20	PF19905	N/A	N/A	N/A	DUF6378
Pfam	UHGV-1367474_23	PF13148	N/A	N/A	N/A	DUF3987
KOfam	UHGV-1367474_24	K19789	360.9	0	radD; DNA repair protein RadD	N/A
PHROG	UHGV-1367474_24	phrog_16	205.8	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1367474_24	UniRef90_R5EXX3	266.0	0	DEAD box helicase	N/A
eggNOG-mapper	UHGV-1367474_24	1530186.JQEY01000002_gene1537	243.0	0	Type III restriction enzyme res subunit	N/A
PADLOC	UHGV-1367474_24	mREase_IV_00004	41.6	0.0000000000075	Type IV methyl-directed restriction enzyme	RM
Pfam	UHGV-1367474_24	PF05203	N/A	N/A	Hom_end-associated Hint	Hom_end_hint
Pfam	UHGV-1367474_24	PF04851	N/A	N/A	Type III restriction enzyme, res subunit	ResIII
Pfam	UHGV-1367474_24	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-1367474_24	COG1061	N/A	N/A	Superfamily II DNA or RNA helicase	N/A
PHROG	UHGV-1367474_25	phrog_29234	46.5	0.00000000000018	N/A	unknown function
UniRef90	UHGV-1367474_25	UniRef90_A0A1D2U346	185.0	0	PriCT_2 domain-containing protein	N/A
eggNOG-mapper	UHGV-1367474_25	1504672.669783144	189.0	0	AAA domain	N/A
Pfam	UHGV-1367474_25	PF08707	N/A	N/A	Primase C terminal 2 (PriCT-2)	PriCT_2
COG	UHGV-1367474_25	COG3598	N/A	N/A	RecA-family ATPase	N/A
KOfam	UHGV-1367474_35	K01520	142.3	3.69943e-42	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	N/A
PHROG	UHGV-1367474_35	phrog_135	148.8	1.68156e-44	dUTPase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1367474_35	UniRef90_UPI001E36DC59	156.0	2.8026e-45	dUTP diphosphatase	N/A
eggNOG-mapper	UHGV-1367474_35	420662.Mpe_B0284	144.0	3.74007e-41	This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA	N/A
Pfam	UHGV-1367474_35	PF00692	N/A	N/A	dUTPase	dUTPase
NCBIFam	UHGV-1367474_35	TIGR00576.1	N/A	N/A	dUTP diphosphatase	N/A
COG	UHGV-1367474_35	COG0756	N/A	N/A	dUTP pyrophosphatase (dUTPase)	N/A
structural_annotation	UHGV-1367474_35	PF00692,MF_00116,NF010561,COG0756	N/A	N/A	N/A	N/A
PHROG	UHGV-1367474_41	phrog_190	69.1	6.7e-20	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1367474_41	UniRef90_A0A509J0U8	125.0	1.14e-34	N/A	N/A
eggNOG-mapper	UHGV-1367474_41	517433.PanABDRAFT_3689	115.0	7.96e-32	N/A	N/A
structural_annotation	UHGV-1367474_41	PF06356,MF_04160,NF033179,COG1591	N/A	N/A	N/A	N/A
KOfam	UHGV-1367474_42	K03465	140.7	1.10002e-41	thyX, thy1; thymidylate synthase (FAD) [EC:2.1.1.148]	N/A
PHROG	UHGV-1367474_42	phrog_85	110.4	1.5e-32	thymidylate synthase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1367474_42	UniRef90_A0A7C3SWB9	166.0	0	FAD-dependent thymidylate synthase	N/A
eggNOG-mapper	UHGV-1367474_42	671143.DAMO_1621	162.0	0	thymidylate synthase (FAD) activity	N/A
Pfam	UHGV-1367474_42	PF02511	N/A	N/A	Thymidylate synthase complementing protein	Thy1
NCBIFam	UHGV-1367474_42	TIGR02170.1	N/A	N/A	FAD-dependent thymidylate synthase	N/A
COG	UHGV-1367474_42	COG1351	N/A	N/A	Thymidylate synthase ThyX, FAD-dependent family	N/A
PHROG	UHGV-1367474_75	phrog_2449	239.3	0	single strand annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1367474_75	UniRef90_A0A315BIF2	209.0	0	Phage recombination protein Bet	N/A
eggNOG-mapper	UHGV-1367474_75	637389.Acaty_c1934	194.0	0	TIGRFAM Phage recombination protein Bet	N/A
Pfam	UHGV-1367474_75	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-1367474_75	TIGR01913.1	N/A	N/A	phage recombination protein Bet	N/A
UniRef90	UHGV-1367474_76	UniRef90_UPI00058AABFF	105.0	6.46e-25	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1367474_76	686340.Metal_2889	66.2	0.0000000000599	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-1367474_76	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1367474_76	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
PHROG	UHGV-1367474_77	phrog_309	121.4	3.3e-36	terminase small subunit	head and packaging
UniRef90	UHGV-1367474_77	UniRef90_A0A7Z0SIC4	132.0	9.55e-35	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1367474_77	1217710.F969_00648	113.0	6.65e-27	transposase activity	N/A
COG	UHGV-1367474_77	COG2963	N/A	N/A	Transposase InsE and inactivated derivatives	N/A
PHROG	UHGV-1367474_78	phrog_5902	205.8	0	N/A	unknown function
UniRef90	UHGV-1367474_78	UniRef90_A0A379K513	583.0	0	Putative phage terminase large subunit	N/A
eggNOG-mapper	UHGV-1367474_78	261292.Nit79A3_1419	561.0	0	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD	N/A
COG	UHGV-1367474_78	COG0507	N/A	N/A	ATPase/5'-3' helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V)	N/A
structural_annotation	UHGV-1367474_78	PF04466,PF20441,MF_04145,TIGR01547,COG4373	N/A	N/A	N/A	N/A
PHROG	UHGV-1367474_79	phrog_1620	163.9	0	Hdf-like antirestriction	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1367474_79	UniRef90_A0A0B6RLP9	151.0	7.70714e-44	DarA_N domain-containing protein	N/A
eggNOG-mapper	UHGV-1367474_79	261292.Nit79A3_1461	138.0	1.41e-39	N/A	N/A
Pfam	UHGV-1367474_79	PF18788	N/A	N/A	Defence against restriction A N-terminal	DarA_N
structural_annotation	UHGV-1367474_79	PF18788,COG3212	N/A	N/A	N/A	N/A
PHROG	UHGV-1367474_80	phrog_1926	81.6	8.2e-24	released from the phage upon host infection	other
eggNOG-mapper	UHGV-1367474_80	261292.Nit79A3_1463	284.0	0	acetyltransferase	N/A
Pfam	UHGV-1367474_80	PF18823	N/A	N/A	Inorganic Pyrophosphatase	InPase
Pfam	UHGV-1367474_80	PF18788	N/A	N/A	Defence against restriction A N-terminal	DarA_N
COG	UHGV-1367474_80	COG0454	N/A	N/A	N-acetyltransferase, GNAT superfamily (includes histone acetyltransferase HPA2)	N/A
KOfam	UHGV-1367474_81	K03427	89.1	6e-26	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	N/A
PHROG	UHGV-1367474_81	phrog_11801	1088.1	0	DNA methyltransferase	other
UniRef90	UHGV-1367474_81	UniRef90_UPI000784402E	968.0	0	N-6 DNA methylase	N/A
eggNOG-mapper	UHGV-1367474_81	261292.Nit79A3_1470	923.0	0	DEAD-like helicases superfamily	N/A
PADLOC	UHGV-1367474_81	DrmD_00004	53.2	0.0000000000000052	DrmD	DISARM
Pfam	UHGV-1367474_81	PF02384	N/A	N/A	N-6 DNA Methylase	N6_Mtase
Pfam	UHGV-1367474_81	PF00176	N/A	N/A	SNF2-related domain	SNF2-rel_dom
Pfam	UHGV-1367474_81	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-1367474_81	COG0553	N/A	N/A	Superfamily II DNA or RNA helicase, SNF2 family	N/A
PHROG	UHGV-1367474_82	phrog_1629	49.6	0.000000000000067	Ulx-like anti-restriction	moron, auxiliary metabolic gene and host takeover
PHROG	UHGV-1367474_83	phrog_1053	201.6	0	N/A	unknown function
UniRef90	UHGV-1367474_83	UniRef90_A0A0C4YDL3	183.0	0	Baseplate or tail tube	N/A
eggNOG-mapper	UHGV-1367474_83	1217710.F969_00600	200.0	0	N/A	N/A
PHROG	UHGV-1367474_84	phrog_1114	175.8	0	PmgG-like head morphogenesis	head and packaging
eggNOG-mapper	UHGV-1367474_84	232721.Ajs_0937	221.0	0	N/A	N/A
eggNOG-mapper	UHGV-1367474_100	261292.Nit79A3_1446	60.1	0.0000000365	N/A	N/A
PHROG	UHGV-1367474_101	phrog_30560	191.2	0	N/A	unknown function
eggNOG-mapper	UHGV-1367474_101	1217710.F969_00610	170.0	0	N/A	N/A
PHROG	UHGV-1367474_102	phrog_4333	172.8	0	N/A	unknown function
eggNOG-mapper	UHGV-1367474_102	261292.Nit79A3_1435	189.0	0	N/A	N/A
PHROG	UHGV-1367474_103	phrog_4179	88.0	1.1e-25	N/A	unknown function
PHROG	UHGV-1367474_104	phrog_1269	48.4	0.000000000000077	baseplate wedge subunit	tail
PHROG	UHGV-1367474_105	phrog_4315	139.2	9.80068e-42	N/A	unknown function
eggNOG-mapper	UHGV-1367474_105	261292.Nit79A3_1439	152.0	5.13e-40	N/A	N/A
PHROG	UHGV-1367474_106	phrog_4597	103.4	1.6e-30	N/A	unknown function
PHROG	UHGV-1367474_107	phrog_1014	408.2	0	N/A	unknown function
UniRef90	UHGV-1367474_107	UniRef90_A0A0C4Y1C1	458.0	0	N/A	N/A
eggNOG-mapper	UHGV-1367474_107	261292.Nit79A3_1441	544.0	0	N/A	N/A
PHROG	UHGV-1367474_109	phrog_1036	393.2	0	tail sheath	tail
eggNOG-mapper	UHGV-1367474_109	261292.Nit79A3_1443	563.0	0	N/A	N/A
structural_annotation	UHGV-1367474_109	PF10758,COG3497	N/A	N/A	N/A	N/A
PHROG	UHGV-1367474_110	phrog_1497	521.8	0	portal protein	head and packaging
UniRef90	UHGV-1367474_110	UniRef90_A0A0C4Y7C1	470.0	0	Putative portal protein	N/A
eggNOG-mapper	UHGV-1367474_110	261292.Nit79A3_1433	507.0	0	N/A	N/A
PHROG	UHGV-1367474_111	phrog_24337	145.3	3.09687e-43	N/A	unknown function
eggNOG-mapper	UHGV-1367474_111	232721.Ajs_0938	159.0	5.60519e-45	N/A	N/A
PHROG	UHGV-1367474_112	phrog_34863	104.3	1e-30	N/A	unknown function
UniRef90	UHGV-1367474_112	UniRef90_A0A3N7PCV0	168.0	5.51999e-40	Lytic transglycosylase, catalytic	N/A
eggNOG-mapper	UHGV-1367474_112	686340.Metal_2883	167.0	9.89317e-43	Belongs to the WXG100 family	N/A
Pfam	UHGV-1367474_112	PF21277	N/A	N/A	Type VI secretion system spike protein VgrG3-like, C-terminal	T6SS_VgrG3-like_C
COG	UHGV-1367474_112	COG3409	N/A	N/A	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	N/A
PHROG	UHGV-1367474_113	phrog_4683	78.5	5.8e-23	N/A	unknown function
eggNOG-mapper	UHGV-1367474_113	641147.HMPREF9021_01772	62.0	0.0000000000196	N/A	N/A
PHROG	UHGV-1367474_114	phrog_1369	253.6	0	baseplate protein	tail
eggNOG-mapper	UHGV-1367474_114	261292.Nit79A3_1475	206.0	0	N/A	N/A
PHROG	UHGV-1367474_115	phrog_4620	84.5	6.4e-25	N/A	unknown function
UniRef90	UHGV-1367474_115	UniRef90_UPI0005B818FF	67.8	0.00000000182	phage tail protein	N/A
eggNOG-mapper	UHGV-1367474_115	1217710.F969_00575	61.6	0.0000000201	N/A	N/A
COG	UHGV-1367474_117	COG5295	N/A	N/A	Autotransporter adhesin	N/A