UHGV-1427261 (vOTU-124272)

Viral Genome: UHGV-1427261

Genome Information

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Overview
UHGV ID	UHGV-1427261
vOTU ID	vOTU-124272
Representative Genome?	Yes
Source	MGV
Original Genome ID	MGV-GENOME-0169293
Associated Biosample	SAMN02334027
Viral Genome Confidence	Confident

Quality Assessment
CheckV Method	AAI-based
CheckV Completeness	55.94 (Medium-quality)
Trimmed?	No
CheckV Viral Markers	5
CheckV Host Markers	0
Recoded?	No

Viral Content
geNomad score	0.9812
Viral Hallmark Genes (geNomad)	3
Plasmid Hallmark Genes (geNomad)	0
ViralVerify Prediction	Virus
ViralVerify Score	19.98
Jumbo Phage?	No

Genome Content
Length (bps)	23,099
GC Content	54.50%
Genetic Code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS Genes	48
CDS Density	95%
Average CDS Length (bps)	455.31
Total tRNA Genes	1
Suppressor tRNA Genes	0

Genome Content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 55.94)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1427261_1	phrog_10898	289.1	0	N/A	unknown function
UniRef90	UHGV-1427261_1	UniRef90_A0A7U3NJT3	192.0	0	Putative Ig-like domain-containing protein	N/A
eggNOG-mapper	UHGV-1427261_1	717606.PaecuDRAFT_2136	66.6	0.000000000692	S-layer homology domain	N/A
COG	UHGV-1427261_1	COG1520	N/A	N/A	Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat	N/A
structural_annotation	UHGV-1427261_1	PF19081,PF15418,MF_01905,NF032891,COG3291	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1427261_2	PF16408,NF033510	N/A	N/A	N/A	N/A
COG	UHGV-1427261_3	COG3064	N/A	N/A	Membrane protein TolA involved in colicin uptake	N/A
eggNOG-mapper	UHGV-1427261_5	1519439.JPJG01000060_gene1895	125.0	1.2e-33	N/A	N/A
structural_annotation	UHGV-1427261_5	PF10618	N/A	N/A	N/A	N/A
PHROG	UHGV-1427261_7	phrog_18725	95.9	4.2e-28	N/A	unknown function
eggNOG-mapper	UHGV-1427261_7	693746.OBV_18220	128.0	1.49e-35	N/A	N/A
Pfam	UHGV-1427261_8	PF07484	N/A	N/A	Phage Tail Collar Domain	Collar
structural_annotation	UHGV-1427261_8	PF20055,MF_03008,NF010730,COG3940	N/A	N/A	N/A	N/A
Pfam	UHGV-1427261_9	PF07484	N/A	N/A	Phage Tail Collar Domain	Collar
structural_annotation	UHGV-1427261_9	PF07484	N/A	N/A	N/A	N/A
PHROG	UHGV-1427261_12	phrog_6918	95.6	3.2e-28	holin	lysis
UniRef90	UHGV-1427261_12	UniRef90_A0A316QCY7	103.0	1.73e-26	Holin	N/A
eggNOG-mapper	UHGV-1427261_12	1297617.JPJD01000020_gene301	101.0	1.21e-26	Bacteriophage holin of superfamily 6 (Holin_LLH)	N/A
Pfam	UHGV-1427261_12	PF09682	N/A	N/A	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
structural_annotation	UHGV-1427261_12	PF09682,TIGR01673	N/A	N/A	N/A	N/A
PHROG	UHGV-1427261_13	phrog_14030	140.4	1.10002e-41	N/A	unknown function
UniRef90	UHGV-1427261_13	UniRef90_R6LL81	236.0	0	SLH domain-containing protein	N/A
eggNOG-mapper	UHGV-1427261_13	1121866.AUGK01000003_gene1444	91.7	1.76e-18	amidase activity	N/A
COG	UHGV-1427261_13	COG1705	N/A	N/A	Flagellum-specific peptidoglycan hydrolase FlgJ	N/A
structural_annotation	UHGV-1427261_14	PF16509,MF_00245,NF001066,COG2739	N/A	N/A	N/A	N/A
PHROG	UHGV-1427261_15	phrog_3754	90.9	1.4e-26	N/A	unknown function
eggNOG-mapper	UHGV-1427261_15	476272.RUMHYD_01764	160.0	0	N/A	N/A
PHROG	UHGV-1427261_16	phrog_21718	84.9	5.8e-25	N/A	unknown function
eggNOG-mapper	UHGV-1427261_16	397290.C810_05210	61.2	0.00000000167	N/A	N/A
PHROG	UHGV-1427261_17	phrog_22984	74.3	4.1e-22	N/A	unknown function
PHROG	UHGV-1427261_18	phrog_16490	160.2	0	N/A	unknown function
eggNOG-mapper	UHGV-1427261_18	1408437.JNJN01000043_gene803	132.0	1.24e-34	N/A	N/A
PHROG	UHGV-1427261_19	phrog_20016	190.1	0	N/A	unknown function
UniRef90	UHGV-1427261_19	UniRef90_A0A285PT46	189.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-1427261_19	1226322.HMPREF1545_00077	172.0	0	N/A	N/A
structural_annotation	UHGV-1427261_19	PF18573,NF033147	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1427261_20	PF12510	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1427261_21	1226322.HMPREF1545_00079	112.0	1.2e-30	N/A	N/A
KOfam	UHGV-1427261_22	K14059	132.2	6.3e-39	int; integrase	N/A
PHROG	UHGV-1427261_22	phrog_1	141.3	8.00001e-42	integrase	integration and excision
UniRef90	UHGV-1427261_22	UniRef90_UPI00195CC1EE	382.0	0	tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-1427261_22	1235835.C814_03141	199.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-1427261_22	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1427261_22	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1427261_22	PF00589,MF_01807,TIGR02224,COG4973	N/A	N/A	N/A	N/A
Pfam	UHGV-1427261_23	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1427261_23	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1427261_23	PF12844	N/A	N/A	N/A	N/A
PHROG	UHGV-1427261_28	phrog_18248	54.8	7.1e-16	transcriptional regulator	transcription regulation
UniRef90	UHGV-1427261_28	UniRef90_A0A415Z594	67.0	0.00000000000709	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1427261_28	1589749.A0A0B5A036_9CAUD	63.5	0.000000000222	sequence-specific DNA binding	N/A
Pfam	UHGV-1427261_28	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-1427261_28	PF12844,NF007257,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-1427261_29	phrog_8	54.6	0.0000000000000025	transcriptional regulator	transcription regulation
UniRef90	UHGV-1427261_29	UniRef90_A0A371AUE2	75.9	2.77e-16	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1427261_29	1449336.JQLO01000001_gene2237	64.3	0.00000000000224	Transcriptional regulator, Cro CI family	N/A
Pfam	UHGV-1427261_29	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1427261_29	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1427261_29	PF13443,NF041951,COG1396	N/A	N/A	N/A	N/A
UniRef90	UHGV-1427261_30	UniRef90_A0A1C7FQD9	91.3	7.27e-22	Transcriptional regulator	N/A
Pfam	UHGV-1427261_30	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
UniRef90	UHGV-1427261_31	UniRef90_UPI000F0633F9	65.1	0.00000000000161	DNA-binding protein	N/A
eggNOG-mapper	UHGV-1427261_31	1235835.C814_03153	77.0	6.12e-18	N/A	N/A
structural_annotation	UHGV-1427261_31	PF09035,NF040990	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1427261_32	PF10548	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1427261_35	PF14634	N/A	N/A	N/A	N/A
KOfam	UHGV-1427261_36	K16628	89.5	1.2e-26	COL7A; collagen type VII alpha	N/A
PHROG	UHGV-1427261_36	phrog_4433	216.7	0	N/A	unknown function
eggNOG-mapper	UHGV-1427261_36	106648.BBLJ01000054_gene3814	101.0	3.37e-23	regulation of DNA-templated transcription, elongation	N/A
Pfam	UHGV-1427261_36	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
COG	UHGV-1427261_36	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
structural_annotation	UHGV-1427261_36	PF12120,NF000318	N/A	N/A	N/A	N/A
PHROG	UHGV-1427261_37	phrog_124	116.5	2.2e-34	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1427261_37	UniRef90_A0A2Z4QBI4	390.0	0	AAA domain protein	N/A
eggNOG-mapper	UHGV-1427261_37	445972.ANACOL_00146	219.0	0	AAA domain	N/A
Pfam	UHGV-1427261_37	PF13479	N/A	N/A	AAA domain	AAA_24
COG	UHGV-1427261_37	COG1100	N/A	N/A	GTPase SAR1 family domain	N/A
structural_annotation	UHGV-1427261_37	PF13479,MF_00350,TIGR01618,COG0468	N/A	N/A	N/A	N/A
UniRef90	UHGV-1427261_38	UniRef90_A0A2Z4QA33	239.0	0	PD-(D/E)XK nuclease	N/A
eggNOG-mapper	UHGV-1427261_38	718252.FP2_01050	126.0	1.03e-33	N/A	N/A
structural_annotation	UHGV-1427261_38	PF10926,MF_03030,TIGR04328,COG4343	N/A	N/A	N/A	N/A
PHROG	UHGV-1427261_39	phrog_378	97.1	2.1e-28	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1427261_39	UniRef90_UPI001E43F9BA	72.4	0.000000000000401	N/A	N/A
eggNOG-mapper	UHGV-1427261_39	1423732.BALS01000134_gene393	65.5	0.0000000000437	N/A	N/A
structural_annotation	UHGV-1427261_39	PF05037,NF004948	N/A	N/A	N/A	N/A
PHROG	UHGV-1427261_40	phrog_16304	58.9	9.2e-17	N/A	unknown function
UniRef90	UHGV-1427261_40	UniRef90_A0A3D3Y5P0	225.0	0	N/A	N/A
Pfam	UHGV-1427261_40	PF19808	N/A	N/A	N/A	DUF6291
COG	UHGV-1427261_40	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-1427261_40	PF19808	N/A	N/A	N/A	N/A
KOfam	UHGV-1427261_42	K00390	100.8	1.3e-29	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	N/A
PHROG	UHGV-1427261_42	phrog_424	116.0	1.9e-34	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1427261_42	UniRef90_UPI001D087498	408.0	0	phosphoadenosine phosphosulfate reductase family protein	N/A
eggNOG-mapper	UHGV-1427261_42	1408437.JNJN01000032_gene2312	348.0	0	Phosphoadenosine phosphosulfate reductase	N/A
PADLOC	UHGV-1427261_42	BrxP_00001	60.7	3.7e-18	BrxP	BREX
Pfam	UHGV-1427261_42	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-1427261_42	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-1427261_42	PF01507,MF_00063,NF010369,COG0175	N/A	N/A	N/A	N/A
PHROG	UHGV-1427261_44	phrog_3136	136.3	9.99995e-41	N/A	unknown function
UniRef90	UHGV-1427261_44	UniRef90_A0A843GST0	95.1	3.44e-21	ASCH domain-containing protein	N/A
COG	UHGV-1427261_44	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
structural_annotation	UHGV-1427261_44	PF08819,MF_00684,NF008917,COG4933	N/A	N/A	N/A	N/A
PHROG	UHGV-1427261_45	phrog_38832	45.2	4e-17	N/A	unknown function
eggNOG-mapper	UHGV-1427261_45	665956.HMPREF1032_03087	70.1	0.000000000000582	N/A	N/A
PHROG	UHGV-1427261_46	phrog_2118	98.6	7.7e-29	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1427261_46	UniRef90_A0A415ZMS1	203.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-1427261_46	1511.CLOST_1546	116.0	7.31e-32	HNH endonuclease	N/A
Pfam	UHGV-1427261_46	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-1427261_46	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-1427261_46	TIGR02646,COG1403	N/A	N/A	N/A	N/A